Wall clock time and date at job start Tue Mar 31 2020 11:08:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86806 * 119.99666 * 2 1 4 4 H 1.48498 * 109.47408 * 270.00206 * 3 2 1 5 5 H 1.48501 * 109.47215 * 30.00538 * 3 2 1 6 6 H 1.48503 * 109.46699 * 150.00178 * 3 2 1 7 7 C 1.37873 * 120.00219 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00073 * 180.02562 * 7 2 1 9 9 C 1.50707 * 119.99710 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.46730 * 180.02562 * 9 7 2 11 11 C 1.52995 * 109.46982 * 180.02562 * 10 9 7 12 12 C 1.53006 * 109.46988 * 299.99494 * 11 10 9 13 13 N 1.46498 * 109.47130 * 180.02562 * 12 11 10 14 14 C 1.36225 * 120.13289 * 300.27539 * 13 12 11 15 15 C 1.35715 * 119.25797 * 180.27236 * 14 13 12 16 16 C 1.40070 * 119.51854 * 359.72503 * 15 14 13 17 17 C 1.50703 * 119.87178 * 180.02562 * 16 15 14 18 18 H 1.08992 * 109.88289 * 357.93165 * 17 16 15 19 19 C 1.54317 * 109.88879 * 236.89470 * 17 16 15 20 20 C 1.55394 * 102.90234 * 218.41140 * 19 17 16 21 21 C 1.54904 * 101.74450 * 35.47753 * 20 19 17 22 22 N 1.47452 * 109.88750 * 118.95969 * 17 16 15 23 23 N 1.31390 * 120.25246 * 0.02562 * 16 15 14 24 24 C 1.34333 * 120.77104 * 0.02562 * 23 16 15 25 25 N 1.31445 * 119.76518 * 179.97438 * 24 23 16 26 26 C 1.53005 * 109.46555 * 60.00251 * 12 11 10 27 27 C 1.52995 * 109.47267 * 299.99578 * 26 12 11 28 28 H 0.96999 * 120.00044 * 359.97438 * 1 2 3 29 29 H 1.09001 * 109.46732 * 60.01057 * 9 7 2 30 30 H 1.09000 * 109.47335 * 59.99988 * 10 9 7 31 31 H 1.09005 * 109.46911 * 299.99906 * 10 9 7 32 32 H 1.09001 * 109.47453 * 180.02562 * 11 10 9 33 33 H 1.09000 * 109.47545 * 59.99566 * 11 10 9 34 34 H 1.09000 * 109.47037 * 300.00384 * 12 11 10 35 35 H 1.08001 * 120.37684 * 359.97328 * 14 13 12 36 36 H 1.07995 * 120.24448 * 179.71013 * 15 14 13 37 37 H 1.09004 * 110.70713 * 336.69355 * 19 17 16 38 38 H 1.08998 * 110.70138 * 99.92807 * 19 17 16 39 39 H 1.09005 * 110.87231 * 277.39544 * 20 19 17 40 40 H 1.08998 * 111.02718 * 153.64008 * 20 19 17 41 41 H 1.08991 * 110.37898 * 204.19132 * 21 20 19 42 42 H 1.09006 * 110.37258 * 81.84812 * 21 20 19 43 43 H 1.00907 * 110.99762 * 356.15055 * 22 17 16 44 44 H 0.96993 * 119.99984 * 0.02562 * 25 24 23 45 45 H 1.09000 * 109.47340 * 60.00318 * 26 12 11 46 46 H 1.09005 * 109.46620 * 180.02562 * 26 12 11 47 47 H 1.09000 * 109.47545 * 300.00614 * 27 26 12 48 48 H 1.08996 * 109.47053 * 180.02562 * 27 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0466 -1.4000 5 1 1.4465 2.6527 0.7002 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 6 2.2453 -3.6620 -0.0005 11 6 1.4804 -4.9870 -0.0012 12 6 0.6004 -5.0685 1.2479 13 7 -0.1316 -6.3375 1.2476 14 6 -0.9790 -6.6379 0.2242 15 6 -1.6524 -7.8160 0.2447 16 6 -1.4601 -8.7023 1.3122 17 6 -2.2033 -10.0130 1.3427 18 1 -2.8662 -10.0834 0.4804 19 6 -3.0233 -10.1212 2.6455 20 6 -2.8686 -11.6190 3.0294 21 6 -1.4167 -11.9123 2.5764 22 7 -1.2449 -11.1335 1.3315 23 7 -0.6343 -8.3954 2.2869 24 6 0.0370 -7.2318 2.2781 25 7 0.8579 -6.9446 3.2637 26 6 -0.3939 -3.9055 1.2478 27 6 0.3711 -2.5805 1.2485 28 1 -0.4850 0.8400 0.0004 29 1 0.6242 -2.5567 -0.8904 30 1 2.8720 -3.6043 0.8894 31 1 2.8720 -3.6042 -0.8906 32 1 2.1887 -5.8155 -0.0007 33 1 0.8540 -5.0445 -0.8913 34 1 1.2269 -5.0109 2.1380 35 1 -1.1172 -5.9442 -0.5920 36 1 -2.3318 -8.0683 -0.5560 37 1 -2.6027 -9.4800 3.4201 38 1 -4.0691 -9.8732 2.4642 39 1 -3.5807 -12.2360 2.4813 40 1 -2.9784 -11.7605 4.1046 41 1 -1.2883 -12.9765 2.3789 42 1 -0.7079 -11.5779 3.3340 43 1 -0.2974 -10.7979 1.2426 44 1 0.9776 -7.5720 3.9937 45 1 -1.0203 -3.9631 0.3577 46 1 -1.0205 -3.9633 2.1379 47 1 0.9975 -2.5230 2.1386 48 1 -0.3373 -1.7521 1.2489 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001173339406.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:08:24 Heat of formation + Delta-G solvation = 39.683778 kcal Electronic energy + Delta-G solvation = -26750.245087 eV Core-core repulsion = 23225.057598 eV Total energy + Delta-G solvation = -3525.187489 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.196 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.34787 -39.97935 -38.83648 -36.10006 -35.31416 -34.29620 -31.65739 -31.29270 -31.08434 -30.67100 -29.61762 -26.69833 -25.58457 -23.91710 -23.42223 -22.61141 -22.00087 -21.54611 -20.39997 -19.14754 -18.41568 -18.34590 -17.76543 -16.80273 -16.62265 -16.49507 -16.28020 -15.50632 -15.08396 -14.97752 -14.86111 -14.70104 -14.27642 -14.18269 -14.08779 -13.78852 -13.35114 -13.11620 -12.95356 -12.94551 -12.73046 -12.57113 -12.36215 -12.31051 -12.13945 -12.05159 -11.94790 -11.75482 -11.65812 -11.48477 -11.27814 -10.92100 -10.79481 -10.62581 -10.51818 -10.36310 -9.48728 -8.65316 -8.07961 -6.19893 -0.25854 0.78952 1.40394 1.42740 1.44512 1.51583 2.44192 2.63121 3.00211 3.19575 3.37291 3.50365 3.61757 3.73252 3.83049 3.85387 3.88910 4.15159 4.21131 4.31501 4.37450 4.42833 4.49861 4.57863 4.63968 4.66508 4.73286 4.77208 4.85114 4.89829 4.94667 4.98077 5.03226 5.06810 5.10003 5.13287 5.21261 5.28969 5.34925 5.36545 5.54693 5.65721 5.71850 5.82075 5.89768 6.02333 6.15737 6.21472 6.41993 6.86264 6.91240 7.40636 7.47921 8.95974 Molecular weight = 316.20amu Principal moments of inertia in cm(-1) A = 0.036851 B = 0.002577 C = 0.002551 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 759.638824 B =10861.364017 C =10972.103837 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C 0.016 3.984 3 Si 0.946 3.054 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.273 1.273 7 C -0.534 4.534 8 H 0.049 0.951 9 C 0.047 3.953 10 C -0.098 4.098 11 C -0.109 4.109 12 C 0.142 3.858 13 N -0.491 5.491 14 C 0.193 3.807 15 C -0.295 4.295 16 C 0.241 3.759 17 C 0.122 3.878 18 H 0.130 0.870 19 C -0.131 4.131 20 C -0.120 4.120 21 C 0.041 3.959 22 N -0.666 5.666 23 N -0.579 5.579 24 C 0.531 3.469 25 N -0.805 5.805 26 C -0.108 4.108 27 C -0.097 4.097 28 H 0.260 0.740 29 H 0.010 0.990 30 H 0.042 0.958 31 H 0.059 0.941 32 H 0.062 0.938 33 H 0.081 0.919 34 H 0.096 0.904 35 H 0.199 0.801 36 H 0.190 0.810 37 H 0.053 0.947 38 H 0.095 0.905 39 H 0.090 0.910 40 H 0.079 0.921 41 H 0.090 0.910 42 H 0.031 0.969 43 H 0.336 0.664 44 H 0.345 0.655 45 H 0.073 0.927 46 H 0.046 0.954 47 H 0.021 0.979 48 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.660 -22.011 -0.442 23.657 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.553 5.553 2 C -0.183 4.183 3 Si 0.772 3.228 4 H -0.201 1.201 5 H -0.211 1.211 6 H -0.198 1.198 7 C -0.572 4.572 8 H 0.067 0.933 9 C 0.029 3.971 10 C -0.136 4.136 11 C -0.148 4.148 12 C 0.039 3.961 13 N -0.187 5.187 14 C 0.055 3.945 15 C -0.324 4.324 16 C 0.072 3.928 17 C 0.012 3.988 18 H 0.148 0.852 19 C -0.170 4.170 20 C -0.158 4.158 21 C -0.087 4.087 22 N -0.296 5.296 23 N -0.302 5.302 24 C 0.164 3.836 25 N -0.446 5.446 26 C -0.146 4.146 27 C -0.136 4.136 28 H 0.069 0.931 29 H 0.028 0.972 30 H 0.061 0.939 31 H 0.078 0.922 32 H 0.081 0.919 33 H 0.099 0.901 34 H 0.114 0.886 35 H 0.215 0.785 36 H 0.207 0.793 37 H 0.071 0.929 38 H 0.113 0.887 39 H 0.109 0.891 40 H 0.098 0.902 41 H 0.108 0.892 42 H 0.050 0.950 43 H 0.152 0.848 44 H 0.162 0.838 45 H 0.092 0.908 46 H 0.064 0.936 47 H 0.040 0.960 48 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -8.143 -21.776 0.240 23.250 hybrid contribution 0.685 1.666 0.673 1.923 sum -7.458 -20.111 0.913 21.469 Atomic orbital electron populations 1.69966 1.06845 1.26989 1.51494 1.25638 0.95655 1.01976 0.95009 0.85745 0.78760 0.80085 0.78199 1.20056 1.21110 1.19801 1.21595 0.93015 0.92372 1.50199 0.93300 1.18641 0.92962 0.91964 0.93536 1.21450 0.98055 0.93503 1.00588 1.21825 0.98451 0.98074 0.96419 1.21557 0.93514 0.79673 1.01342 1.44872 1.37634 1.17769 1.18425 1.23020 0.84746 0.96996 0.89711 1.21573 1.10503 0.95512 1.04836 1.22919 0.87109 0.95473 0.87294 1.21675 0.93177 0.83042 1.00908 0.85227 1.22895 1.00957 0.97702 0.95487 1.22726 0.96195 0.95047 1.01856 1.22920 0.96923 0.99026 0.89877 1.62396 1.08877 1.21019 1.37264 1.69671 1.14841 1.16758 1.28970 1.20235 0.91097 0.83618 0.88697 1.69992 1.26999 1.39295 1.08331 1.21830 0.97224 0.94303 1.01276 1.21379 0.98961 0.95157 0.98120 0.93081 0.97178 0.93945 0.92247 0.91891 0.90092 0.88628 0.78465 0.79292 0.92860 0.88674 0.89135 0.90203 0.89157 0.95022 0.84776 0.83831 0.90843 0.93559 0.95978 0.91438 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -50.84 11.32 21.45 0.24 -50.60 16 2 C 0.02 0.86 5.30 84.65 0.45 1.31 16 3 Si 0.95 43.01 29.54 68.60 2.03 45.04 16 4 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 5 H -0.29 -12.82 7.11 99.48 0.71 -12.12 16 6 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 7 C -0.53 -28.54 8.56 25.60 0.22 -28.32 16 8 H 0.05 2.60 7.74 -2.91 -0.02 2.58 16 9 C 0.05 2.21 2.10 -11.54 -0.02 2.19 16 10 C -0.10 -3.78 5.14 30.59 0.16 -3.62 16 11 C -0.11 -3.41 5.17 30.59 0.16 -3.25 16 12 C 0.14 4.67 2.53 45.00 0.11 4.79 16 13 N -0.49 -14.09 2.62 -505.56 -1.32 -15.41 16 14 C 0.19 3.99 9.17 83.43 0.76 4.75 16 15 C -0.29 -4.99 9.67 22.13 0.21 -4.78 16 16 C 0.24 4.97 5.32 43.07 0.23 5.20 16 17 C 0.12 1.90 3.81 44.51 0.17 2.07 16 18 H 0.13 1.42 7.92 -2.39 -0.02 1.40 16 19 C -0.13 -1.98 6.45 31.86 0.21 -1.77 16 20 C -0.12 -1.50 7.08 32.07 0.23 -1.28 16 21 C 0.04 0.64 7.58 86.77 0.66 1.29 16 22 N -0.67 -11.38 7.37 -486.19 -3.58 -14.96 16 23 N -0.58 -15.97 9.71 -185.60 -1.80 -17.77 16 24 C 0.53 17.16 8.43 261.57 2.20 19.36 16 25 N -0.81 -29.20 12.62 -59.88 -0.76 -29.96 16 26 C -0.11 -3.85 5.18 30.59 0.16 -3.69 16 27 C -0.10 -4.41 4.98 30.59 0.15 -4.26 16 28 H 0.26 13.87 8.31 -92.71 -0.77 13.10 16 29 H 0.01 0.50 8.14 -2.39 -0.02 0.48 16 30 H 0.04 1.71 8.14 -2.39 -0.02 1.69 16 31 H 0.06 2.22 8.14 -2.38 -0.02 2.20 16 32 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 33 H 0.08 2.18 7.27 -2.39 -0.02 2.16 16 34 H 0.10 3.72 6.80 -2.39 -0.02 3.71 16 35 H 0.20 3.01 6.96 -2.91 -0.02 2.99 16 36 H 0.19 1.68 7.99 -2.91 -0.02 1.66 16 37 H 0.05 1.10 7.41 -2.38 -0.02 1.08 16 38 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16 39 H 0.09 0.89 8.14 -2.38 -0.02 0.87 16 40 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 41 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 42 H 0.03 0.58 8.14 -2.38 -0.02 0.56 16 43 H 0.34 6.71 8.15 -89.69 -0.73 5.98 16 44 H 0.35 11.94 8.90 -92.71 -0.82 11.12 16 45 H 0.07 2.36 7.30 -2.39 -0.02 2.34 16 46 H 0.05 1.67 8.14 -2.38 -0.02 1.65 16 47 H 0.02 1.03 8.14 -2.39 -0.02 1.01 16 48 H 0.07 3.48 6.07 -2.39 -0.01 3.47 16 Total: -1.00 -64.04 371.33 0.28 -63.77 By element: Atomic # 1 Polarization: 30.49 SS G_CDS: -0.59 Total: 29.90 kcal Atomic # 6 Polarization: -16.07 SS G_CDS: 6.06 Total: -10.01 kcal Atomic # 7 Polarization: -121.48 SS G_CDS: -7.22 Total: -128.70 kcal Atomic # 14 Polarization: 43.01 SS G_CDS: 2.03 Total: 45.04 kcal Total: -64.04 0.28 -63.77 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173339406.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.451 kcal (2) G-P(sol) polarization free energy of solvation -64.044 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.407 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.277 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.767 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.684 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds