Wall clock time and date at job start Tue Mar 31 2020 10:57:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86793 * 119.99669 * 2 1 4 4 H 1.48505 * 109.47183 * 239.99617 * 3 2 1 5 5 H 1.48496 * 109.47425 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47216 * 119.99610 * 3 2 1 7 7 C 1.37874 * 119.99835 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99766 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00270 * 0.02562 * 7 2 1 10 10 C 1.53006 * 109.46866 * 179.97438 * 9 7 2 11 11 C 1.52999 * 109.46626 * 179.97438 * 10 9 7 12 12 C 1.52997 * 109.46991 * 60.00378 * 11 10 9 13 13 N 1.46905 * 109.47252 * 179.97438 * 12 11 10 14 14 C 1.46971 * 111.00197 * 300.32613 * 13 12 11 15 15 C 1.53448 * 109.74867 * 165.13451 * 14 13 12 16 16 N 1.46312 * 108.18684 * 49.57805 * 15 14 13 17 17 C 1.35947 * 123.85861 * 343.76439 * 16 15 14 18 18 N 1.29634 * 107.35426 * 179.68474 * 17 16 15 19 19 N 1.28976 * 109.47504 * 0.14586 * 18 17 16 20 20 C 1.30926 * 109.76125 * 359.95107 * 19 18 17 21 21 C 1.50700 * 126.48691 * 179.97438 * 20 19 18 22 22 C 1.52999 * 117.49856 * 8.59785 * 21 20 19 23 23 C 1.52995 * 117.49980 * 299.97262 * 21 20 19 24 24 C 1.47386 * 111.00184 * 176.04211 * 13 12 11 25 25 C 1.52996 * 109.47131 * 299.99311 * 12 11 10 26 26 C 1.52997 * 109.47078 * 59.99958 * 9 7 2 27 27 H 0.96992 * 120.00038 * 0.02562 * 1 2 3 28 28 H 1.09001 * 109.47358 * 299.99375 * 9 7 2 29 29 H 1.08993 * 109.46955 * 300.00219 * 10 9 7 30 30 H 1.09000 * 109.47050 * 60.00048 * 10 9 7 31 31 H 1.09002 * 109.46719 * 180.02562 * 11 10 9 32 32 H 1.08993 * 109.47839 * 299.99931 * 11 10 9 33 33 H 1.09000 * 109.47611 * 59.99933 * 12 11 10 34 34 H 1.09001 * 109.41968 * 285.20709 * 14 13 12 35 35 H 1.09003 * 109.42621 * 45.03764 * 14 13 12 36 36 H 1.08996 * 109.70178 * 289.91097 * 15 14 13 37 37 H 1.09002 * 109.73479 * 169.26047 * 15 14 13 38 38 H 1.09003 * 115.54811 * 154.29756 * 21 20 19 39 39 H 1.09001 * 117.49800 * 359.97438 * 22 21 20 40 40 H 1.09001 * 117.50118 * 145.02255 * 22 21 20 41 41 H 1.09002 * 117.49649 * 214.98357 * 23 21 20 42 42 H 1.09008 * 117.50027 * 359.97438 * 23 21 20 43 43 H 1.08991 * 109.75517 * 293.83977 * 24 13 12 44 44 H 1.08997 * 109.75121 * 54.53413 * 24 13 12 45 45 H 1.08996 * 109.47452 * 300.00000 * 25 12 11 46 46 H 1.09000 * 109.47054 * 180.02562 * 25 12 11 47 47 H 1.09002 * 109.47153 * 299.99793 * 26 9 7 48 48 H 1.08996 * 109.46952 * 59.99965 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7464 -0.0006 6 1 3.1028 1.6965 1.2126 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2454 -3.6621 0.0005 11 6 1.4804 -4.9870 0.0012 12 6 0.6005 -5.0684 -1.2478 13 7 -0.1337 -6.3409 -1.2475 14 6 0.7916 -7.4828 -1.2399 15 6 0.0317 -8.7634 -0.8693 16 7 -1.1637 -8.8443 -1.7090 17 6 -1.6721 -7.7938 -2.4063 18 7 -2.7198 -8.2206 -3.0393 19 7 -2.8997 -9.4709 -2.7790 20 6 -1.9655 -9.8925 -1.9644 21 6 -1.8166 -11.2888 -1.4174 22 6 -2.7238 -12.3754 -1.9981 23 6 -2.9712 -11.8476 -0.5834 24 6 -1.0637 -6.4144 -2.3885 25 6 -0.3938 -3.9056 -1.2478 26 6 0.3720 -2.5805 -1.2490 27 1 -0.4850 0.8400 -0.0004 28 1 0.6241 -2.5568 0.8903 29 1 2.8721 -3.6042 -0.8894 30 1 2.8721 -3.6043 0.8905 31 1 2.1888 -5.8155 0.0016 32 1 0.8541 -5.0446 0.8913 33 1 1.2268 -5.0110 -2.1380 34 1 1.2338 -7.5975 -2.2296 35 1 1.5808 -7.3051 -0.5094 36 1 -0.2581 -8.7277 0.1808 37 1 0.6656 -9.6321 -1.0471 38 1 -0.8046 -11.5767 -1.1327 39 1 -3.4286 -12.0802 -2.7755 40 1 -2.3087 -13.3786 -2.0956 41 1 -2.7187 -12.5035 0.2498 42 1 -3.8383 -11.2052 -0.4300 43 1 -1.8486 -5.6671 -2.2728 44 1 -0.5215 -6.2383 -3.3176 45 1 -1.0202 -3.9631 -0.3577 46 1 -1.0210 -3.9639 -2.1373 47 1 -0.3364 -1.7520 -1.2494 48 1 0.9990 -2.5229 -2.1387 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001173340043.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:57:04 Heat of formation + Delta-G solvation = 102.778996 kcal Electronic energy + Delta-G solvation = -26800.179365 eV Core-core repulsion = 23277.727890 eV Total energy + Delta-G solvation = -3522.451475 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.196 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -43.38062 -39.23288 -37.50544 -36.65612 -34.50882 -32.58001 -31.30042 -30.50871 -29.46774 -28.59050 -25.84644 -24.50809 -24.39656 -23.39319 -22.70578 -21.41730 -20.68244 -20.39575 -19.69784 -18.86169 -17.41917 -16.74736 -16.40164 -15.96865 -15.61094 -15.19482 -14.92635 -14.73603 -14.43667 -14.12365 -13.65703 -13.23727 -13.01543 -12.89661 -12.74540 -12.53054 -12.21138 -11.89013 -11.73362 -11.61199 -11.46670 -11.31541 -11.04963 -11.02269 -10.94446 -10.69959 -10.67692 -10.51776 -10.36721 -10.25773 -10.17698 -9.84872 -9.41556 -9.03054 -8.94192 -8.70938 -8.44821 -8.31001 -5.99131 -4.05592 1.66193 2.29479 2.71622 3.30377 3.35898 3.37778 3.48957 3.54047 3.92378 4.14835 4.23535 4.42448 4.42704 4.50755 4.62170 4.64715 4.76051 5.04109 5.18327 5.20810 5.29092 5.29534 5.32762 5.35708 5.45274 5.47118 5.61519 5.69426 5.75338 5.81776 5.86267 5.99536 6.05467 6.13219 6.27056 6.31211 6.37843 6.57796 6.67085 6.71683 6.82597 6.88103 7.01915 7.11221 7.23068 7.47284 7.73327 7.99602 8.13429 8.45134 8.67673 8.98325 9.59260 11.06371 Molecular weight = 316.20amu Principal moments of inertia in cm(-1) A = 0.036226 B = 0.002537 C = 0.002447 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 772.735939 B =11032.116771 C =11439.203850 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.061 3.939 3 Si 0.889 3.111 4 H -0.278 1.278 5 H -0.288 1.288 6 H -0.278 1.278 7 C -0.515 4.515 8 H 0.053 0.947 9 C 0.049 3.951 10 C -0.107 4.107 11 C -0.107 4.107 12 C 0.093 3.907 13 N -0.537 5.537 14 C 0.031 3.969 15 C 0.112 3.888 16 N -0.463 5.463 17 C 0.187 3.813 18 N -0.289 5.289 19 N -0.299 5.299 20 C 0.206 3.794 21 C -0.087 4.087 22 C -0.149 4.149 23 C -0.157 4.157 24 C 0.139 3.861 25 C -0.112 4.112 26 C -0.108 4.108 27 H 0.260 0.740 28 H 0.026 0.974 29 H 0.046 0.954 30 H 0.050 0.950 31 H 0.045 0.955 32 H 0.066 0.934 33 H 0.042 0.958 34 H 0.045 0.955 35 H 0.111 0.889 36 H 0.098 0.902 37 H 0.095 0.905 38 H 0.122 0.878 39 H 0.110 0.890 40 H 0.103 0.897 41 H 0.104 0.896 42 H 0.100 0.900 43 H 0.118 0.882 44 H 0.067 0.933 45 H 0.064 0.936 46 H 0.045 0.955 47 H 0.095 0.905 48 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.036 -22.365 -1.379 22.408 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.140 4.140 3 Si 0.717 3.283 4 H -0.204 1.204 5 H -0.213 1.213 6 H -0.204 1.204 7 C -0.553 4.553 8 H 0.071 0.929 9 C 0.031 3.969 10 C -0.145 4.145 11 C -0.145 4.145 12 C -0.013 4.013 13 N -0.263 5.263 14 C -0.098 4.098 15 C -0.012 4.012 16 N -0.153 5.153 17 C -0.081 4.081 18 N -0.128 5.128 19 N -0.140 5.140 20 C -0.061 4.061 21 C -0.108 4.108 22 C -0.187 4.187 23 C -0.195 4.195 24 C 0.009 3.991 25 C -0.150 4.150 26 C -0.146 4.146 27 H 0.070 0.930 28 H 0.044 0.956 29 H 0.065 0.935 30 H 0.069 0.931 31 H 0.063 0.937 32 H 0.085 0.915 33 H 0.060 0.940 34 H 0.064 0.936 35 H 0.129 0.871 36 H 0.116 0.884 37 H 0.113 0.887 38 H 0.139 0.861 39 H 0.128 0.872 40 H 0.121 0.879 41 H 0.122 0.878 42 H 0.119 0.881 43 H 0.136 0.864 44 H 0.085 0.915 45 H 0.083 0.917 46 H 0.064 0.936 47 H 0.113 0.887 48 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges -1.593 -22.253 -1.837 22.385 hybrid contribution 2.160 0.969 0.103 2.370 sum 0.567 -21.284 -1.734 21.362 Atomic orbital electron populations 1.69854 1.05813 1.26481 1.50691 1.24963 0.94837 0.98973 0.95190 0.86718 0.79651 0.83429 0.78533 1.20385 1.21334 1.20365 1.21180 0.92796 0.90788 1.50548 0.92917 1.18653 0.92561 0.91411 0.94323 1.21624 0.98643 0.94061 1.00210 1.21675 0.97427 0.98267 0.97124 1.21805 0.94726 0.86679 0.98131 1.62229 1.19320 1.03146 1.41583 1.22558 0.95469 0.89520 1.02230 1.22176 0.83975 0.99587 0.95418 1.45855 1.23686 1.08886 1.36880 1.24718 0.95035 0.92536 0.95791 1.73977 1.13868 1.03722 1.21255 1.74466 1.20715 1.04022 1.14755 1.23426 0.91404 0.91224 1.00007 1.20045 0.97652 0.86561 1.06551 1.23021 1.01540 0.96711 0.97416 1.23072 0.98645 1.02912 0.94907 1.20709 0.96576 0.88395 0.93377 1.21777 0.97245 0.95027 1.00921 1.21633 0.99641 0.94603 0.98771 0.92969 0.95559 0.93510 0.93140 0.93652 0.91521 0.94025 0.93648 0.87110 0.88418 0.88729 0.86061 0.87172 0.87872 0.87791 0.88107 0.86368 0.91488 0.91748 0.93640 0.88671 0.94882 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.80 11.32 55.43 0.63 -24.18 16 2 C 0.06 1.66 5.30 -17.82 -0.09 1.57 16 3 Si 0.89 20.88 29.54 -169.99 -5.02 15.86 16 4 H -0.28 -6.48 7.11 56.52 0.40 -6.07 16 5 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 6 H -0.28 -6.48 7.11 56.52 0.40 -6.07 16 7 C -0.51 -13.62 8.56 -34.44 -0.29 -13.92 16 8 H 0.05 1.38 7.74 -52.48 -0.41 0.97 16 9 C 0.05 1.14 2.10 -91.77 -0.19 0.95 16 10 C -0.11 -2.03 5.14 -26.73 -0.14 -2.17 16 11 C -0.11 -1.64 5.01 -26.73 -0.13 -1.77 16 12 C 0.09 1.39 1.95 -67.71 -0.13 1.26 16 13 N -0.54 -6.99 4.53 -227.28 -1.03 -8.02 16 14 C 0.03 0.31 5.40 -3.55 -0.02 0.29 16 15 C 0.11 0.99 7.12 -3.91 -0.03 0.96 16 16 N -0.46 -5.73 3.12 -110.80 -0.35 -6.07 16 17 C 0.19 2.75 7.87 -155.27 -1.22 1.53 16 18 N -0.29 -4.89 12.20 32.76 0.40 -4.49 16 19 N -0.30 -4.75 11.87 32.66 0.39 -4.36 16 20 C 0.21 2.62 7.60 -155.63 -1.18 1.44 16 21 C -0.09 -0.75 6.12 -91.77 -0.56 -1.31 16 22 C -0.15 -1.11 10.15 -26.73 -0.27 -1.38 16 23 C -0.16 -1.16 10.23 -26.73 -0.27 -1.43 16 24 C 0.14 1.87 5.17 -4.67 -0.02 1.84 16 25 C -0.11 -1.98 4.86 -26.71 -0.13 -2.11 16 26 C -0.11 -2.37 4.98 -26.71 -0.13 -2.51 16 27 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 28 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 29 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 30 H 0.05 0.95 8.14 -51.93 -0.42 0.52 16 31 H 0.04 0.57 6.11 -51.93 -0.32 0.26 16 32 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 33 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.05 0.46 8.08 -51.93 -0.42 0.04 16 35 H 0.11 0.99 5.64 -51.93 -0.29 0.69 16 36 H 0.10 0.82 8.14 -51.93 -0.42 0.39 16 37 H 0.09 0.57 8.14 -51.93 -0.42 0.14 16 38 H 0.12 0.75 8.14 -51.93 -0.42 0.33 16 39 H 0.11 1.01 7.93 -51.93 -0.41 0.59 16 40 H 0.10 0.53 8.14 -51.93 -0.42 0.11 16 41 H 0.10 0.53 8.14 -51.93 -0.42 0.11 16 42 H 0.10 0.90 8.14 -51.92 -0.42 0.48 16 43 H 0.12 1.65 6.64 -51.93 -0.34 1.31 16 44 H 0.07 0.85 8.13 -51.93 -0.42 0.43 16 45 H 0.06 1.22 8.14 -51.93 -0.42 0.79 16 46 H 0.04 0.74 6.49 -51.93 -0.34 0.41 16 47 H 0.10 2.40 6.07 -51.93 -0.32 2.09 16 48 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 LS Contribution 368.42 15.07 5.55 5.55 Total: -1.00 -30.62 368.42 -12.15 -42.78 By element: Atomic # 1 Polarization: 7.59 SS G_CDS: -7.90 Total: -0.30 kcal Atomic # 6 Polarization: -11.94 SS G_CDS: -4.83 Total: -16.77 kcal Atomic # 7 Polarization: -47.16 SS G_CDS: 0.04 Total: -47.12 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -5.02 Total: 15.86 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -30.62 -12.15 -42.78 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173340043.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 145.558 kcal (2) G-P(sol) polarization free energy of solvation -30.624 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 114.934 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.155 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.779 kcal (6) G-S(sol) free energy of system = (1) + (5) 102.779 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds