Wall clock time and date at job start Tue Mar 31 2020 10:57:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86793 * 119.99669 * 2 1 4 4 H 1.48505 * 109.47183 * 239.99617 * 3 2 1 5 5 H 1.48496 * 109.47425 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47216 * 119.99610 * 3 2 1 7 7 C 1.37874 * 119.99835 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99766 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00270 * 0.02562 * 7 2 1 10 10 C 1.53006 * 109.46866 * 179.97438 * 9 7 2 11 11 C 1.52999 * 109.46626 * 179.97438 * 10 9 7 12 12 C 1.52997 * 109.46991 * 60.00378 * 11 10 9 13 13 N 1.46905 * 109.47252 * 179.97438 * 12 11 10 14 14 C 1.46971 * 111.00197 * 300.32613 * 13 12 11 15 15 C 1.53448 * 109.74867 * 165.13451 * 14 13 12 16 16 N 1.46312 * 108.18684 * 49.57805 * 15 14 13 17 17 C 1.35947 * 123.85861 * 343.76439 * 16 15 14 18 18 N 1.29634 * 107.35426 * 179.68474 * 17 16 15 19 19 N 1.28976 * 109.47504 * 0.14586 * 18 17 16 20 20 C 1.30926 * 109.76125 * 359.95107 * 19 18 17 21 21 C 1.50700 * 126.48691 * 179.97438 * 20 19 18 22 22 C 1.52999 * 117.49856 * 8.59785 * 21 20 19 23 23 C 1.52995 * 117.49980 * 299.97262 * 21 20 19 24 24 C 1.47386 * 111.00184 * 176.04211 * 13 12 11 25 25 C 1.52996 * 109.47131 * 299.99311 * 12 11 10 26 26 C 1.52997 * 109.47078 * 59.99958 * 9 7 2 27 27 H 0.96992 * 120.00038 * 0.02562 * 1 2 3 28 28 H 1.09001 * 109.47358 * 299.99375 * 9 7 2 29 29 H 1.08993 * 109.46955 * 300.00219 * 10 9 7 30 30 H 1.09000 * 109.47050 * 60.00048 * 10 9 7 31 31 H 1.09002 * 109.46719 * 180.02562 * 11 10 9 32 32 H 1.08993 * 109.47839 * 299.99931 * 11 10 9 33 33 H 1.09000 * 109.47611 * 59.99933 * 12 11 10 34 34 H 1.09001 * 109.41968 * 285.20709 * 14 13 12 35 35 H 1.09003 * 109.42621 * 45.03764 * 14 13 12 36 36 H 1.08996 * 109.70178 * 289.91097 * 15 14 13 37 37 H 1.09002 * 109.73479 * 169.26047 * 15 14 13 38 38 H 1.09003 * 115.54811 * 154.29756 * 21 20 19 39 39 H 1.09001 * 117.49800 * 359.97438 * 22 21 20 40 40 H 1.09001 * 117.50118 * 145.02255 * 22 21 20 41 41 H 1.09002 * 117.49649 * 214.98357 * 23 21 20 42 42 H 1.09008 * 117.50027 * 359.97438 * 23 21 20 43 43 H 1.08991 * 109.75517 * 293.83977 * 24 13 12 44 44 H 1.08997 * 109.75121 * 54.53413 * 24 13 12 45 45 H 1.08996 * 109.47452 * 300.00000 * 25 12 11 46 46 H 1.09000 * 109.47054 * 180.02562 * 25 12 11 47 47 H 1.09002 * 109.47153 * 299.99793 * 26 9 7 48 48 H 1.08996 * 109.46952 * 59.99965 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7464 -0.0006 6 1 3.1028 1.6965 1.2126 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2454 -3.6621 0.0005 11 6 1.4804 -4.9870 0.0012 12 6 0.6005 -5.0684 -1.2478 13 7 -0.1337 -6.3409 -1.2475 14 6 0.7916 -7.4828 -1.2399 15 6 0.0317 -8.7634 -0.8693 16 7 -1.1637 -8.8443 -1.7090 17 6 -1.6721 -7.7938 -2.4063 18 7 -2.7198 -8.2206 -3.0393 19 7 -2.8997 -9.4709 -2.7790 20 6 -1.9655 -9.8925 -1.9644 21 6 -1.8166 -11.2888 -1.4174 22 6 -2.7238 -12.3754 -1.9981 23 6 -2.9712 -11.8476 -0.5834 24 6 -1.0637 -6.4144 -2.3885 25 6 -0.3938 -3.9056 -1.2478 26 6 0.3720 -2.5805 -1.2490 27 1 -0.4850 0.8400 -0.0004 28 1 0.6241 -2.5568 0.8903 29 1 2.8721 -3.6042 -0.8894 30 1 2.8721 -3.6043 0.8905 31 1 2.1888 -5.8155 0.0016 32 1 0.8541 -5.0446 0.8913 33 1 1.2268 -5.0110 -2.1380 34 1 1.2338 -7.5975 -2.2296 35 1 1.5808 -7.3051 -0.5094 36 1 -0.2581 -8.7277 0.1808 37 1 0.6656 -9.6321 -1.0471 38 1 -0.8046 -11.5767 -1.1327 39 1 -3.4286 -12.0802 -2.7755 40 1 -2.3087 -13.3786 -2.0956 41 1 -2.7187 -12.5035 0.2498 42 1 -3.8383 -11.2052 -0.4300 43 1 -1.8486 -5.6671 -2.2728 44 1 -0.5215 -6.2383 -3.3176 45 1 -1.0202 -3.9631 -0.3577 46 1 -1.0210 -3.9639 -2.1373 47 1 -0.3364 -1.7520 -1.2494 48 1 0.9990 -2.5229 -2.1387 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001173340043.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:57:03 Heat of formation + Delta-G solvation = 86.258649 kcal Electronic energy + Delta-G solvation = -26800.895741 eV Core-core repulsion = 23277.727890 eV Total energy + Delta-G solvation = -3523.167851 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.196 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -44.37932 -40.42926 -38.19683 -37.90696 -35.70900 -34.31037 -32.44123 -31.79903 -30.77548 -29.95617 -27.18797 -25.89675 -25.24923 -24.60492 -23.26573 -22.85735 -22.04474 -21.27804 -20.68531 -20.42468 -18.39019 -18.24110 -17.65997 -16.89385 -16.75169 -16.46442 -16.13793 -15.82914 -15.51963 -15.09557 -14.89055 -14.64315 -14.44725 -14.25852 -13.95194 -13.52926 -13.23316 -13.16876 -13.06277 -12.81216 -12.67312 -12.47236 -12.38973 -12.30144 -12.16838 -12.08696 -11.94879 -11.79544 -11.65216 -11.57072 -11.31645 -11.16734 -11.04544 -10.70668 -10.43934 -10.33183 -10.03699 -9.46551 -8.04791 -6.18509 0.71550 1.42435 1.42747 1.43373 1.50338 1.66895 2.43218 2.47203 2.91419 3.11452 3.21830 3.29655 3.44758 3.72455 3.79550 3.93017 3.94850 4.04586 4.10131 4.17354 4.22271 4.30910 4.38788 4.46023 4.58161 4.64039 4.70662 4.74041 4.78243 4.78950 4.84828 4.88083 4.93801 4.97635 5.02568 5.05237 5.16323 5.21773 5.28173 5.33130 5.43972 5.52608 5.63276 5.71286 5.80607 5.83969 5.99052 6.08620 6.26231 6.44915 6.95563 7.49661 7.63255 8.98526 Molecular weight = 316.20amu Principal moments of inertia in cm(-1) A = 0.036226 B = 0.002537 C = 0.002447 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 772.735939 B =11032.116771 C =11439.203850 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C 0.011 3.989 3 Si 0.948 3.052 4 H -0.272 1.272 5 H -0.288 1.288 6 H -0.272 1.272 7 C -0.533 4.533 8 H 0.052 0.948 9 C 0.044 3.956 10 C -0.100 4.100 11 C -0.097 4.097 12 C 0.106 3.894 13 N -0.542 5.542 14 C 0.029 3.971 15 C 0.108 3.892 16 N -0.461 5.461 17 C 0.178 3.822 18 N -0.331 5.331 19 N -0.342 5.342 20 C 0.215 3.785 21 C -0.097 4.097 22 C -0.146 4.146 23 C -0.149 4.149 24 C 0.144 3.856 25 C -0.103 4.103 26 C -0.100 4.100 27 H 0.258 0.742 28 H -0.009 1.009 29 H 0.050 0.950 30 H 0.050 0.950 31 H 0.087 0.913 32 H 0.058 0.942 33 H 0.048 0.952 34 H 0.052 0.948 35 H 0.131 0.869 36 H 0.107 0.893 37 H 0.134 0.866 38 H 0.156 0.844 39 H 0.085 0.915 40 H 0.133 0.867 41 H 0.135 0.865 42 H 0.077 0.923 43 H 0.104 0.896 44 H 0.074 0.926 45 H 0.047 0.953 46 H 0.055 0.945 47 H 0.056 0.944 48 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.415 -25.206 -0.738 25.332 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.188 4.188 3 Si 0.774 3.226 4 H -0.197 1.197 5 H -0.214 1.214 6 H -0.197 1.197 7 C -0.571 4.571 8 H 0.070 0.930 9 C 0.025 3.975 10 C -0.138 4.138 11 C -0.135 4.135 12 C -0.001 4.001 13 N -0.267 5.267 14 C -0.099 4.099 15 C -0.013 4.013 16 N -0.151 5.151 17 C -0.092 4.092 18 N -0.170 5.170 19 N -0.182 5.182 20 C -0.053 4.053 21 C -0.117 4.117 22 C -0.184 4.184 23 C -0.188 4.188 24 C 0.014 3.986 25 C -0.141 4.141 26 C -0.139 4.139 27 H 0.067 0.933 28 H 0.009 0.991 29 H 0.069 0.931 30 H 0.069 0.931 31 H 0.105 0.895 32 H 0.077 0.923 33 H 0.066 0.934 34 H 0.070 0.930 35 H 0.148 0.852 36 H 0.125 0.875 37 H 0.152 0.848 38 H 0.174 0.826 39 H 0.103 0.897 40 H 0.151 0.849 41 H 0.153 0.847 42 H 0.095 0.905 43 H 0.122 0.878 44 H 0.092 0.908 45 H 0.066 0.934 46 H 0.074 0.926 47 H 0.074 0.926 48 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges 0.801 -25.107 -1.189 25.148 hybrid contribution 1.391 1.830 -0.069 2.300 sum 2.192 -23.277 -1.259 23.413 Atomic orbital electron populations 1.70016 1.07117 1.26929 1.51628 1.25727 0.95603 1.02263 0.95158 0.85769 0.78467 0.79569 0.78791 1.19692 1.21359 1.19697 1.21636 0.93050 0.92433 1.49997 0.92979 1.18645 0.93142 0.92447 0.93233 1.21474 0.97779 0.94201 1.00385 1.21564 0.97731 0.97433 0.96739 1.21511 0.93719 0.86581 0.98337 1.62107 1.19871 1.03271 1.41450 1.22721 0.95321 0.88575 1.03281 1.22524 0.83051 1.00478 0.95251 1.46073 1.24408 1.07974 1.36668 1.24780 0.94919 0.93329 0.96140 1.73863 1.15461 1.04699 1.22964 1.74373 1.22873 1.03942 1.17050 1.24182 0.90073 0.92713 0.98305 1.20424 0.99752 0.84366 1.07199 1.23078 1.00824 0.97726 0.96794 1.23119 0.97217 1.02564 0.95854 1.20610 0.96405 0.87706 0.93890 1.21585 0.97467 0.94368 1.00653 1.21396 0.98799 0.95754 0.97914 0.93265 0.99072 0.93133 0.93086 0.89506 0.92345 0.93428 0.93010 0.85170 0.87458 0.84787 0.82613 0.89652 0.84883 0.84732 0.90457 0.87787 0.90798 0.93404 0.92594 0.92586 0.95278 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.03 11.32 21.45 0.24 -52.79 16 2 C 0.01 0.60 5.30 84.65 0.45 1.04 16 3 Si 0.95 43.35 29.54 68.60 2.03 45.38 16 4 H -0.27 -12.05 7.11 99.48 0.71 -11.35 16 5 H -0.29 -13.07 7.11 99.48 0.71 -12.37 16 6 H -0.27 -12.06 7.11 99.48 0.71 -11.36 16 7 C -0.53 -28.71 8.56 25.60 0.22 -28.49 16 8 H 0.05 2.74 7.74 -2.91 -0.02 2.71 16 9 C 0.04 2.09 2.10 -11.54 -0.02 2.07 16 10 C -0.10 -3.68 5.14 30.60 0.16 -3.52 16 11 C -0.10 -2.72 5.01 30.59 0.15 -2.57 16 12 C 0.11 2.98 1.95 44.91 0.09 3.06 16 13 N -0.54 -12.93 4.53 -872.97 -3.95 -16.88 16 14 C 0.03 0.46 5.40 86.44 0.47 0.93 16 15 C 0.11 1.46 7.12 86.57 0.62 2.07 16 16 N -0.46 -10.42 3.12 -504.45 -1.57 -11.99 16 17 C 0.18 5.13 7.87 138.11 1.09 6.21 16 18 N -0.33 -11.46 12.20 -50.26 -0.61 -12.07 16 19 N -0.34 -11.00 11.87 -50.58 -0.60 -11.60 16 20 C 0.22 5.15 7.60 138.20 1.05 6.20 16 21 C -0.10 -1.36 6.12 -11.54 -0.07 -1.43 16 22 C -0.15 -1.85 10.15 30.60 0.31 -1.54 16 23 C -0.15 -1.82 10.23 30.59 0.31 -1.50 16 24 C 0.14 3.77 5.17 85.49 0.44 4.21 16 25 C -0.10 -3.70 4.86 30.61 0.15 -3.55 16 26 C -0.10 -4.54 4.98 30.61 0.15 -4.39 16 27 H 0.26 14.37 8.31 -92.71 -0.77 13.60 16 28 H -0.01 -0.48 8.14 -2.39 -0.02 -0.50 16 29 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 30 H 0.05 1.84 8.14 -2.39 -0.02 1.83 16 31 H 0.09 1.77 6.11 -2.39 -0.01 1.75 16 32 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 33 H 0.05 1.32 8.14 -2.39 -0.02 1.30 16 34 H 0.05 0.81 8.08 -2.39 -0.02 0.79 16 35 H 0.13 1.60 5.64 -2.39 -0.01 1.59 16 36 H 0.11 1.31 8.14 -2.39 -0.02 1.29 16 37 H 0.13 0.81 8.14 -2.39 -0.02 0.79 16 38 H 0.16 1.10 8.14 -2.39 -0.02 1.08 16 39 H 0.08 1.53 7.93 -2.39 -0.02 1.51 16 40 H 0.13 0.87 8.14 -2.39 -0.02 0.85 16 41 H 0.13 0.83 8.14 -2.39 -0.02 0.81 16 42 H 0.08 1.32 8.14 -2.38 -0.02 1.30 16 43 H 0.10 2.97 6.64 -2.39 -0.02 2.96 16 44 H 0.07 1.81 8.13 -2.39 -0.02 1.79 16 45 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 46 H 0.06 1.87 6.49 -2.39 -0.02 1.85 16 47 H 0.06 2.98 6.07 -2.39 -0.01 2.96 16 48 H 0.03 1.30 8.14 -2.39 -0.02 1.28 16 Total: -1.00 -71.32 368.42 2.03 -69.29 By element: Atomic # 1 Polarization: 10.93 SS G_CDS: 0.94 Total: 11.87 kcal Atomic # 6 Polarization: -26.75 SS G_CDS: 5.56 Total: -21.20 kcal Atomic # 7 Polarization: -98.84 SS G_CDS: -6.50 Total: -105.34 kcal Atomic # 14 Polarization: 43.35 SS G_CDS: 2.03 Total: 45.38 kcal Total: -71.32 2.03 -69.29 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173340043.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 155.545 kcal (2) G-P(sol) polarization free energy of solvation -71.318 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.228 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.031 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.286 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.259 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds