Wall clock time and date at job start Tue Mar 31 2020 11:00:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86804 * 119.99973 * 2 1 4 4 H 1.48493 * 109.47390 * 240.00064 * 3 2 1 5 5 H 1.48496 * 109.46795 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.46836 * 119.99957 * 3 2 1 7 7 C 1.37884 * 120.00113 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99949 * 180.02562 * 7 2 1 9 9 C 1.50696 * 119.99961 * 359.97438 * 7 2 1 10 10 C 1.52997 * 109.47246 * 180.02562 * 9 7 2 11 11 C 1.52999 * 109.47081 * 300.00150 * 10 9 7 12 12 C 1.53002 * 109.47263 * 300.00055 * 11 10 9 13 13 N 1.46899 * 109.47347 * 179.97438 * 12 11 10 14 14 C 1.46956 * 110.99677 * 175.00005 * 13 12 11 15 15 C 1.53057 * 109.36162 * 183.18894 * 14 13 12 16 16 N 1.46954 * 109.36263 * 301.59585 * 15 14 13 17 17 C 1.39051 * 111.00038 * 183.18895 * 16 15 14 18 18 C 1.39478 * 120.15889 * 56.20043 * 17 16 15 19 19 C 1.38556 * 117.90671 * 180.02562 * 18 17 16 20 20 C 1.38811 * 118.04030 * 359.97438 * 19 18 17 21 21 N 1.31795 * 120.01384 * 359.97438 * 20 19 18 22 22 N 1.28343 * 122.28600 * 359.75295 * 21 20 19 23 23 C 1.46956 * 110.88042 * 59.32532 * 16 15 14 24 24 C 1.46954 * 110.99900 * 298.79657 * 13 12 11 25 25 C 1.53001 * 109.47068 * 59.99626 * 12 11 10 26 26 C 1.52999 * 109.47384 * 300.00300 * 25 12 11 27 27 H 0.96998 * 120.00023 * 0.02562 * 1 2 3 28 28 H 1.09006 * 109.47279 * 300.00777 * 9 7 2 29 29 H 1.09001 * 109.47294 * 180.02562 * 10 9 7 30 30 H 1.08997 * 109.47356 * 60.00108 * 10 9 7 31 31 H 1.08999 * 109.47859 * 179.97438 * 11 10 9 32 32 H 1.08997 * 109.47212 * 59.99507 * 11 10 9 33 33 H 1.09001 * 109.47042 * 299.99807 * 12 11 10 34 34 H 1.09002 * 109.48908 * 303.15220 * 14 13 12 35 35 H 1.09002 * 109.49369 * 63.22349 * 14 13 12 36 36 H 1.08997 * 109.48880 * 61.56749 * 15 14 13 37 37 H 1.09004 * 109.48844 * 181.62946 * 15 14 13 38 38 H 1.08010 * 121.04573 * 359.97438 * 18 17 16 39 39 H 1.08001 * 120.98317 * 180.02562 * 19 18 17 40 40 H 1.07997 * 119.99604 * 180.02562 * 20 19 18 41 41 H 1.09002 * 109.48908 * 180.71202 * 23 16 15 42 42 H 1.09000 * 109.51082 * 60.65091 * 23 16 15 43 43 H 1.08997 * 109.49355 * 296.78047 * 24 13 12 44 44 H 1.09004 * 109.48943 * 56.84596 * 24 13 12 45 45 H 1.09001 * 109.47040 * 60.00180 * 25 12 11 46 46 H 1.08997 * 109.47307 * 180.02562 * 25 12 11 47 47 H 1.09001 * 109.46934 * 299.99945 * 26 25 12 48 48 H 1.08994 * 109.47434 * 179.97438 * 26 25 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1029 1.6965 -1.2124 5 1 1.2841 2.7464 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 6 3.1250 -3.5810 -1.2498 12 6 2.2454 -3.6620 -2.4990 13 7 3.0899 -3.5836 -3.6985 14 6 2.2924 -3.7771 -4.9175 15 6 3.2181 -3.7677 -6.1363 16 7 3.9475 -2.4928 -6.1844 17 6 4.7468 -2.4185 -7.3198 18 6 4.1826 -2.5759 -8.5856 19 6 5.0222 -2.4937 -9.6846 20 6 6.3717 -2.2594 -9.4588 21 7 6.8198 -2.1218 -8.2271 22 7 6.0471 -2.1917 -7.2047 23 6 4.7450 -2.2993 -4.9654 24 6 3.8192 -2.3087 -3.7465 25 6 1.2511 -2.4991 -2.4990 26 6 0.3715 -2.5802 -1.2498 27 1 -0.4850 0.8400 -0.0004 28 1 0.6247 -2.5571 0.8896 29 1 1.7003 -4.6061 -0.0010 30 1 2.8720 -3.6044 0.8894 31 1 3.8336 -4.4092 -1.2496 32 1 3.6699 -2.6370 -1.2498 33 1 1.7004 -4.6060 -2.4991 34 1 1.7718 -4.7332 -4.8636 35 1 1.5643 -2.9708 -5.0077 36 1 3.9288 -4.5906 -6.0595 37 1 2.6255 -3.8821 -7.0440 38 1 3.1245 -2.7571 -8.7052 39 1 4.6381 -2.6077 -10.6876 40 1 7.0544 -2.1891 -10.2927 41 1 5.2655 -1.3431 -5.0193 42 1 5.4732 -3.1053 -4.8750 43 1 3.1086 -1.4858 -3.8233 44 1 4.4118 -2.1943 -2.8389 45 1 1.7961 -1.5551 -2.4989 46 1 0.6242 -2.5570 -3.3887 47 1 -0.1735 -3.5242 -1.2498 48 1 -0.3365 -1.7515 -1.2495 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001173340132.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:00:42 Heat of formation + Delta-G solvation = 72.205800 kcal Electronic energy + Delta-G solvation = -27465.767386 eV Core-core repulsion = 23941.990158 eV Total energy + Delta-G solvation = -3523.777228 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.196 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.39226 -39.61179 -37.68798 -35.09260 -33.41788 -32.37338 -31.23404 -31.01852 -29.54676 -28.68462 -26.05782 -25.23899 -24.51486 -23.28730 -23.08598 -21.63066 -20.81409 -19.54449 -18.43043 -17.82917 -17.40747 -16.74142 -15.72749 -15.61918 -15.38632 -14.82090 -14.73033 -14.42972 -14.27673 -14.11884 -13.70380 -13.61518 -13.37611 -13.15746 -12.70850 -12.40912 -11.75315 -11.63509 -11.41228 -11.33417 -11.16176 -11.12267 -10.94576 -10.85828 -10.80791 -10.59034 -10.55800 -10.47117 -10.12478 -9.94741 -9.76967 -9.70196 -9.16007 -8.93639 -8.64811 -8.53883 -8.27880 -7.77216 -5.95024 -3.99373 0.60091 0.76248 3.13018 3.32525 3.37699 3.40688 3.45675 4.06188 4.17353 4.34372 4.45889 4.46371 4.54833 4.79284 4.85837 5.02223 5.17731 5.27764 5.35410 5.45123 5.48155 5.55124 5.59346 5.65458 5.73636 5.82684 5.85747 5.96533 6.04702 6.17126 6.24136 6.34316 6.45083 6.50080 6.54208 6.63635 6.73768 6.77499 6.80884 6.88371 7.08751 7.16066 7.35014 7.47373 7.49415 7.60436 7.76833 7.96462 8.17747 8.50969 8.58865 9.03060 9.63899 11.10672 Molecular weight = 316.20amu Principal moments of inertia in cm(-1) A = 0.017467 B = 0.003499 C = 0.003196 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1602.676609 B = 7999.806441 C = 8758.945586 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.062 3.938 3 Si 0.881 3.119 4 H -0.277 1.277 5 H -0.289 1.289 6 H -0.278 1.278 7 C -0.500 4.500 8 H 0.054 0.946 9 C 0.043 3.957 10 C -0.106 4.106 11 C -0.097 4.097 12 C 0.092 3.908 13 N -0.536 5.536 14 C 0.053 3.947 15 C 0.065 3.935 16 N -0.470 5.470 17 C 0.262 3.738 18 C -0.136 4.136 19 C -0.099 4.099 20 C 0.005 3.995 21 N -0.221 5.221 22 N -0.283 5.283 23 C 0.067 3.933 24 C 0.048 3.952 25 C -0.129 4.129 26 C -0.104 4.104 27 H 0.258 0.742 28 H 0.023 0.977 29 H 0.033 0.967 30 H 0.047 0.953 31 H 0.043 0.957 32 H 0.071 0.929 33 H 0.068 0.932 34 H 0.082 0.918 35 H 0.051 0.949 36 H 0.055 0.945 37 H 0.083 0.917 38 H 0.150 0.850 39 H 0.150 0.850 40 H 0.169 0.831 41 H 0.089 0.911 42 H 0.060 0.940 43 H 0.053 0.947 44 H 0.093 0.907 45 H 0.075 0.925 46 H 0.030 0.970 47 H 0.012 0.988 48 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.893 -8.037 -18.068 20.634 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.139 4.139 3 Si 0.709 3.291 4 H -0.203 1.203 5 H -0.215 1.215 6 H -0.204 1.204 7 C -0.539 4.539 8 H 0.072 0.928 9 C 0.025 3.975 10 C -0.144 4.144 11 C -0.135 4.135 12 C -0.016 4.016 13 N -0.260 5.260 14 C -0.076 4.076 15 C -0.061 4.061 16 N -0.188 5.188 17 C 0.024 3.976 18 C -0.168 4.168 19 C -0.128 4.128 20 C -0.162 4.162 21 N -0.062 5.062 22 N -0.130 5.130 23 C -0.059 4.059 24 C -0.080 4.080 25 C -0.168 4.168 26 C -0.142 4.142 27 H 0.068 0.932 28 H 0.041 0.959 29 H 0.051 0.949 30 H 0.066 0.934 31 H 0.062 0.938 32 H 0.089 0.911 33 H 0.086 0.914 34 H 0.101 0.899 35 H 0.069 0.931 36 H 0.073 0.927 37 H 0.101 0.899 38 H 0.168 0.832 39 H 0.167 0.833 40 H 0.187 0.813 41 H 0.107 0.893 42 H 0.078 0.922 43 H 0.071 0.929 44 H 0.111 0.889 45 H 0.093 0.907 46 H 0.049 0.951 47 H 0.031 0.969 48 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 6.994 -7.664 -16.975 19.895 hybrid contribution -1.002 0.985 -1.147 1.813 sum 5.992 -6.679 -18.121 20.221 Atomic orbital electron populations 1.69855 1.05822 1.26233 1.51166 1.24924 0.94725 0.98719 0.95491 0.86830 0.79764 0.83833 0.78649 1.20305 1.21460 1.20351 1.21106 0.92640 0.90431 1.49678 0.92787 1.18686 0.92703 0.92128 0.93975 1.21546 0.98267 0.98552 0.96074 1.21460 0.97326 1.01215 0.93500 1.21725 0.92894 0.98352 0.88594 1.62526 1.28178 1.33155 1.02103 1.22136 0.94654 1.01891 0.88904 1.22377 0.96777 0.87372 0.99586 1.59200 1.25319 1.32634 1.01619 1.21616 0.90616 0.93325 0.92055 1.21991 1.02073 1.01220 0.91492 1.22301 0.94264 0.95877 1.00316 1.24158 0.95272 0.99491 0.97297 1.72816 1.29167 1.07515 0.96707 1.73262 1.01552 1.14780 1.23456 1.22231 0.94476 1.02954 0.86272 1.22308 0.96955 0.91471 0.97294 1.21989 0.97753 0.99307 0.97751 1.21451 0.98657 0.99231 0.94888 0.93157 0.95885 0.94851 0.93424 0.93803 0.91074 0.91386 0.89926 0.93118 0.92665 0.89886 0.83236 0.83274 0.81347 0.89305 0.92175 0.92887 0.88882 0.90652 0.95099 0.96909 0.89253 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.97 11.32 55.43 0.63 -24.34 16 2 C 0.06 1.67 5.30 -17.82 -0.09 1.57 16 3 Si 0.88 21.07 29.54 -169.99 -5.02 16.05 16 4 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 5 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 6 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 7 C -0.50 -13.00 6.61 -34.44 -0.23 -13.23 16 8 H 0.05 1.40 6.71 -52.49 -0.35 1.04 16 9 C 0.04 1.04 2.59 -91.77 -0.24 0.80 16 10 C -0.11 -2.14 5.41 -26.73 -0.14 -2.29 16 11 C -0.10 -1.79 4.78 -26.73 -0.13 -1.92 16 12 C 0.09 1.59 2.23 -67.71 -0.15 1.44 16 13 N -0.54 -8.20 4.70 -226.48 -1.06 -9.27 16 14 C 0.05 0.69 5.25 -3.76 -0.02 0.67 16 15 C 0.06 0.73 5.37 -3.77 -0.02 0.71 16 16 N -0.47 -6.18 4.74 -172.88 -0.82 -7.00 16 17 C 0.26 3.33 6.47 -154.76 -1.00 2.32 16 18 C -0.14 -1.27 9.32 -39.00 -0.36 -1.64 16 19 C -0.10 -0.73 10.20 -39.25 -0.40 -1.14 16 20 C 0.01 0.05 11.31 -17.36 -0.20 -0.15 16 21 N -0.22 -2.92 11.49 30.57 0.35 -2.57 16 22 N -0.28 -4.09 9.91 31.23 0.31 -3.78 16 23 C 0.07 0.97 4.80 -3.76 -0.02 0.95 16 24 C 0.05 0.76 4.81 -3.77 -0.02 0.74 16 25 C -0.13 -2.58 4.28 -26.73 -0.11 -2.69 16 26 C -0.10 -2.36 5.24 -26.73 -0.14 -2.50 16 27 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 28 H 0.02 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 31 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.07 1.42 4.84 -51.93 -0.25 1.17 16 33 H 0.07 1.16 8.11 -51.93 -0.42 0.74 16 34 H 0.08 0.96 8.12 -51.93 -0.42 0.54 16 35 H 0.05 0.72 6.60 -51.93 -0.34 0.38 16 36 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 37 H 0.08 0.72 6.85 -51.93 -0.36 0.37 16 38 H 0.15 1.06 7.25 -52.48 -0.38 0.68 16 39 H 0.15 0.55 8.06 -52.49 -0.42 0.13 16 40 H 0.17 0.92 8.06 -52.49 -0.42 0.50 16 41 H 0.09 1.33 7.83 -51.93 -0.41 0.92 16 42 H 0.06 0.89 8.07 -51.93 -0.42 0.47 16 43 H 0.05 0.95 6.46 -51.93 -0.34 0.61 16 44 H 0.09 1.54 6.17 -51.93 -0.32 1.22 16 45 H 0.07 1.70 5.53 -51.93 -0.29 1.41 16 46 H 0.03 0.58 6.59 -51.93 -0.34 0.24 16 47 H 0.01 0.26 8.14 -51.93 -0.42 -0.16 16 48 H 0.09 2.31 6.07 -51.93 -0.32 2.00 16 LS Contribution 355.47 15.07 5.36 5.36 Total: -1.00 -29.42 355.47 -11.00 -40.42 By element: Atomic # 1 Polarization: 8.93 SS G_CDS: -7.47 Total: 1.46 kcal Atomic # 6 Polarization: -13.06 SS G_CDS: -3.28 Total: -16.34 kcal Atomic # 7 Polarization: -46.36 SS G_CDS: -0.60 Total: -46.95 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.05 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -29.42 -11.00 -40.42 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173340132.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.629 kcal (2) G-P(sol) polarization free energy of solvation -29.419 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.210 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.004 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.423 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.206 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds