Wall clock time and date at job start Tue Mar 31 2020 11:00:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86804 * 119.99973 * 2 1 4 4 H 1.48493 * 109.47390 * 240.00064 * 3 2 1 5 5 H 1.48496 * 109.46795 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.46836 * 119.99957 * 3 2 1 7 7 C 1.37884 * 120.00113 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99949 * 180.02562 * 7 2 1 9 9 C 1.50696 * 119.99961 * 359.97438 * 7 2 1 10 10 C 1.52997 * 109.47246 * 180.02562 * 9 7 2 11 11 C 1.52999 * 109.47081 * 300.00150 * 10 9 7 12 12 C 1.53002 * 109.47263 * 300.00055 * 11 10 9 13 13 N 1.46899 * 109.47347 * 179.97438 * 12 11 10 14 14 C 1.46956 * 110.99677 * 175.00005 * 13 12 11 15 15 C 1.53057 * 109.36162 * 183.18894 * 14 13 12 16 16 N 1.46954 * 109.36263 * 301.59585 * 15 14 13 17 17 C 1.39051 * 111.00038 * 183.18895 * 16 15 14 18 18 C 1.39478 * 120.15889 * 56.20043 * 17 16 15 19 19 C 1.38556 * 117.90671 * 180.02562 * 18 17 16 20 20 C 1.38811 * 118.04030 * 359.97438 * 19 18 17 21 21 N 1.31795 * 120.01384 * 359.97438 * 20 19 18 22 22 N 1.28343 * 122.28600 * 359.75295 * 21 20 19 23 23 C 1.46956 * 110.88042 * 59.32532 * 16 15 14 24 24 C 1.46954 * 110.99900 * 298.79657 * 13 12 11 25 25 C 1.53001 * 109.47068 * 59.99626 * 12 11 10 26 26 C 1.52999 * 109.47384 * 300.00300 * 25 12 11 27 27 H 0.96998 * 120.00023 * 0.02562 * 1 2 3 28 28 H 1.09006 * 109.47279 * 300.00777 * 9 7 2 29 29 H 1.09001 * 109.47294 * 180.02562 * 10 9 7 30 30 H 1.08997 * 109.47356 * 60.00108 * 10 9 7 31 31 H 1.08999 * 109.47859 * 179.97438 * 11 10 9 32 32 H 1.08997 * 109.47212 * 59.99507 * 11 10 9 33 33 H 1.09001 * 109.47042 * 299.99807 * 12 11 10 34 34 H 1.09002 * 109.48908 * 303.15220 * 14 13 12 35 35 H 1.09002 * 109.49369 * 63.22349 * 14 13 12 36 36 H 1.08997 * 109.48880 * 61.56749 * 15 14 13 37 37 H 1.09004 * 109.48844 * 181.62946 * 15 14 13 38 38 H 1.08010 * 121.04573 * 359.97438 * 18 17 16 39 39 H 1.08001 * 120.98317 * 180.02562 * 19 18 17 40 40 H 1.07997 * 119.99604 * 180.02562 * 20 19 18 41 41 H 1.09002 * 109.48908 * 180.71202 * 23 16 15 42 42 H 1.09000 * 109.51082 * 60.65091 * 23 16 15 43 43 H 1.08997 * 109.49355 * 296.78047 * 24 13 12 44 44 H 1.09004 * 109.48943 * 56.84596 * 24 13 12 45 45 H 1.09001 * 109.47040 * 60.00180 * 25 12 11 46 46 H 1.08997 * 109.47307 * 180.02562 * 25 12 11 47 47 H 1.09001 * 109.46934 * 299.99945 * 26 25 12 48 48 H 1.08994 * 109.47434 * 179.97438 * 26 25 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1029 1.6965 -1.2124 5 1 1.2841 2.7464 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 6 3.1250 -3.5810 -1.2498 12 6 2.2454 -3.6620 -2.4990 13 7 3.0899 -3.5836 -3.6985 14 6 2.2924 -3.7771 -4.9175 15 6 3.2181 -3.7677 -6.1363 16 7 3.9475 -2.4928 -6.1844 17 6 4.7468 -2.4185 -7.3198 18 6 4.1826 -2.5759 -8.5856 19 6 5.0222 -2.4937 -9.6846 20 6 6.3717 -2.2594 -9.4588 21 7 6.8198 -2.1218 -8.2271 22 7 6.0471 -2.1917 -7.2047 23 6 4.7450 -2.2993 -4.9654 24 6 3.8192 -2.3087 -3.7465 25 6 1.2511 -2.4991 -2.4990 26 6 0.3715 -2.5802 -1.2498 27 1 -0.4850 0.8400 -0.0004 28 1 0.6247 -2.5571 0.8896 29 1 1.7003 -4.6061 -0.0010 30 1 2.8720 -3.6044 0.8894 31 1 3.8336 -4.4092 -1.2496 32 1 3.6699 -2.6370 -1.2498 33 1 1.7004 -4.6060 -2.4991 34 1 1.7718 -4.7332 -4.8636 35 1 1.5643 -2.9708 -5.0077 36 1 3.9288 -4.5906 -6.0595 37 1 2.6255 -3.8821 -7.0440 38 1 3.1245 -2.7571 -8.7052 39 1 4.6381 -2.6077 -10.6876 40 1 7.0544 -2.1891 -10.2927 41 1 5.2655 -1.3431 -5.0193 42 1 5.4732 -3.1053 -4.8750 43 1 3.1086 -1.4858 -3.8233 44 1 4.4118 -2.1943 -2.8389 45 1 1.7961 -1.5551 -2.4989 46 1 0.6242 -2.5570 -3.3887 47 1 -0.1735 -3.5242 -1.2498 48 1 -0.3365 -1.7515 -1.2495 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001173340132.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:00:41 Heat of formation + Delta-G solvation = 53.699622 kcal Electronic energy + Delta-G solvation = -27466.569874 eV Core-core repulsion = 23941.990158 eV Total energy + Delta-G solvation = -3524.579717 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.196 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.22897 -40.84291 -39.01144 -36.47193 -34.20376 -34.10340 -32.36866 -32.12822 -31.19634 -30.13244 -27.45266 -26.32374 -26.04761 -24.23209 -24.12350 -23.18005 -22.23842 -20.97159 -19.99005 -18.76184 -18.25158 -17.66401 -17.45171 -16.83356 -16.60256 -16.43421 -15.90885 -15.66638 -15.39492 -15.20907 -14.97235 -14.85153 -14.68001 -14.51496 -14.07202 -13.69945 -13.30739 -13.15714 -12.90726 -12.83527 -12.59975 -12.50622 -12.44109 -12.28739 -12.19918 -12.08065 -11.83722 -11.56634 -11.51756 -11.42556 -11.15702 -10.90978 -10.70585 -10.56130 -10.50005 -10.30809 -9.48034 -9.12746 -8.03367 -6.12440 -0.08889 0.02610 1.38521 1.39896 1.45585 2.28044 2.43885 2.65707 2.94311 3.24983 3.27925 3.62359 3.78295 3.84463 3.93392 3.96692 4.11240 4.20399 4.23764 4.26054 4.28913 4.35748 4.48811 4.50618 4.71459 4.72298 4.78433 4.79684 4.83267 4.89849 4.91849 4.93504 4.97670 5.01735 5.08395 5.13269 5.24720 5.29731 5.45216 5.55012 5.63304 5.66176 5.70557 5.74792 5.87212 5.94924 6.17063 6.23090 6.25403 6.47697 6.97664 7.53096 7.79773 9.00880 Molecular weight = 316.20amu Principal moments of inertia in cm(-1) A = 0.017467 B = 0.003499 C = 0.003196 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1602.676609 B = 7999.806441 C = 8758.945586 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C 0.017 3.983 3 Si 0.932 3.068 4 H -0.275 1.275 5 H -0.289 1.289 6 H -0.273 1.273 7 C -0.502 4.502 8 H 0.051 0.949 9 C 0.038 3.962 10 C -0.100 4.100 11 C -0.091 4.091 12 C 0.102 3.898 13 N -0.530 5.530 14 C 0.051 3.949 15 C 0.070 3.930 16 N -0.479 5.479 17 C 0.242 3.758 18 C -0.138 4.138 19 C -0.081 4.081 20 C 0.010 3.990 21 N -0.267 5.267 22 N -0.326 5.326 23 C 0.082 3.918 24 C 0.056 3.944 25 C -0.116 4.116 26 C -0.099 4.099 27 H 0.256 0.744 28 H -0.012 1.012 29 H 0.053 0.947 30 H 0.045 0.955 31 H 0.065 0.935 32 H 0.050 0.950 33 H 0.085 0.915 34 H 0.105 0.895 35 H 0.038 0.962 36 H 0.053 0.947 37 H 0.117 0.883 38 H 0.176 0.824 39 H 0.197 0.803 40 H 0.204 0.796 41 H 0.074 0.926 42 H 0.053 0.947 43 H 0.028 0.972 44 H 0.080 0.920 45 H 0.043 0.957 46 H 0.042 0.958 47 H 0.029 0.971 48 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.217 -9.633 -21.258 24.152 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.181 4.181 3 Si 0.759 3.241 4 H -0.201 1.201 5 H -0.214 1.214 6 H -0.199 1.199 7 C -0.540 4.540 8 H 0.069 0.931 9 C 0.020 3.980 10 C -0.138 4.138 11 C -0.129 4.129 12 C -0.006 4.006 13 N -0.253 5.253 14 C -0.078 4.078 15 C -0.056 4.056 16 N -0.197 5.197 17 C 0.003 3.997 18 C -0.169 4.169 19 C -0.110 4.110 20 C -0.159 4.159 21 N -0.106 5.106 22 N -0.173 5.173 23 C -0.045 4.045 24 C -0.073 4.073 25 C -0.155 4.155 26 C -0.138 4.138 27 H 0.065 0.935 28 H 0.006 0.994 29 H 0.072 0.928 30 H 0.064 0.936 31 H 0.084 0.916 32 H 0.069 0.931 33 H 0.103 0.897 34 H 0.123 0.877 35 H 0.057 0.943 36 H 0.071 0.929 37 H 0.135 0.865 38 H 0.194 0.806 39 H 0.215 0.785 40 H 0.221 0.779 41 H 0.092 0.908 42 H 0.071 0.929 43 H 0.046 0.954 44 H 0.098 0.902 45 H 0.062 0.938 46 H 0.061 0.939 47 H 0.048 0.952 48 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 7.349 -9.263 -20.166 23.377 hybrid contribution -1.099 1.466 -0.262 1.851 sum 6.250 -7.798 -20.428 22.742 Atomic orbital electron populations 1.69996 1.06918 1.26529 1.52416 1.25544 0.95365 1.01485 0.95692 0.86007 0.78699 0.80700 0.78673 1.20078 1.21440 1.19858 1.21370 0.92603 0.91537 1.48522 0.93100 1.18692 0.93202 0.93051 0.93094 1.21446 0.97687 0.97660 0.97039 1.21374 0.97322 1.01013 0.93195 1.21572 0.92241 0.97611 0.89187 1.62541 1.27996 1.32296 1.02501 1.22278 0.94642 1.02484 0.88348 1.22427 0.96509 0.86538 1.00085 1.59271 1.25421 1.33850 1.01186 1.21795 0.90481 0.94500 0.92964 1.22348 1.03616 1.00428 0.90464 1.22827 0.93109 0.93140 1.01888 1.24832 0.97040 0.97222 0.96768 1.72715 1.29987 1.09771 0.98100 1.73127 1.02723 1.16528 1.24901 1.21910 0.93943 1.01928 0.86721 1.22156 0.96506 0.91016 0.97580 1.21815 0.97745 0.99173 0.96758 1.21304 0.98299 0.98540 0.95630 0.93493 0.99424 0.92819 0.93645 0.91647 0.93098 0.89686 0.87722 0.94341 0.92884 0.86537 0.80640 0.78543 0.77924 0.90751 0.92899 0.95374 0.90216 0.93779 0.93912 0.95246 0.92839 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.21 11.32 21.45 0.24 -52.96 16 2 C 0.02 0.94 5.30 84.66 0.45 1.39 16 3 Si 0.93 44.32 29.54 68.60 2.03 46.35 16 4 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 5 H -0.29 -13.64 7.11 99.48 0.71 -12.93 16 6 H -0.27 -12.70 7.11 99.48 0.71 -12.00 16 7 C -0.50 -26.85 6.61 25.60 0.17 -26.68 16 8 H 0.05 2.70 6.71 -2.91 -0.02 2.68 16 9 C 0.04 1.86 2.59 -11.54 -0.03 1.83 16 10 C -0.10 -3.99 5.41 30.59 0.17 -3.82 16 11 C -0.09 -3.28 4.78 30.59 0.15 -3.14 16 12 C 0.10 3.39 2.23 44.92 0.10 3.50 16 13 N -0.53 -15.62 4.70 -870.45 -4.09 -19.71 16 14 C 0.05 1.20 5.25 86.31 0.45 1.66 16 15 C 0.07 1.41 5.37 86.31 0.46 1.87 16 16 N -0.48 -12.17 4.74 -700.87 -3.32 -15.50 16 17 C 0.24 5.83 6.47 133.10 0.86 6.69 16 18 C -0.14 -2.11 9.32 22.64 0.21 -1.90 16 19 C -0.08 -0.86 10.20 22.48 0.23 -0.63 16 20 C 0.01 0.15 11.31 84.84 0.96 1.11 16 21 N -0.27 -6.82 11.49 -57.20 -0.66 -7.48 16 22 N -0.33 -9.43 9.91 -55.10 -0.55 -9.98 16 23 C 0.08 2.43 4.80 86.31 0.41 2.85 16 24 C 0.06 1.82 4.81 86.31 0.42 2.23 16 25 C -0.12 -4.64 4.28 30.59 0.13 -4.51 16 26 C -0.10 -4.56 5.24 30.59 0.16 -4.40 16 27 H 0.26 14.36 8.31 -92.71 -0.77 13.59 16 28 H -0.01 -0.69 8.14 -2.38 -0.02 -0.71 16 29 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 30 H 0.04 1.80 8.14 -2.39 -0.02 1.78 16 31 H 0.06 2.09 8.14 -2.39 -0.02 2.07 16 32 H 0.05 2.04 4.84 -2.39 -0.01 2.03 16 33 H 0.09 2.62 8.11 -2.39 -0.02 2.60 16 34 H 0.10 2.06 8.12 -2.39 -0.02 2.04 16 35 H 0.04 1.03 6.60 -2.39 -0.02 1.02 16 36 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 37 H 0.12 1.57 6.85 -2.39 -0.02 1.55 16 38 H 0.18 1.67 7.25 -2.91 -0.02 1.65 16 39 H 0.20 0.18 8.06 -2.91 -0.02 0.16 16 40 H 0.20 1.43 8.06 -2.91 -0.02 1.40 16 41 H 0.07 2.37 7.83 -2.39 -0.02 2.35 16 42 H 0.05 1.61 8.07 -2.39 -0.02 1.59 16 43 H 0.03 1.05 6.46 -2.39 -0.02 1.03 16 44 H 0.08 2.75 6.17 -2.39 -0.01 2.74 16 45 H 0.04 2.04 5.53 -2.39 -0.01 2.03 16 46 H 0.04 1.58 6.59 -2.39 -0.02 1.57 16 47 H 0.03 1.22 8.14 -2.39 -0.02 1.20 16 48 H 0.05 2.86 6.07 -2.39 -0.01 2.84 16 Total: -1.00 -68.04 355.47 -0.10 -68.14 By element: Atomic # 1 Polarization: 12.14 SS G_CDS: 0.95 Total: 13.09 kcal Atomic # 6 Polarization: -27.25 SS G_CDS: 5.30 Total: -21.95 kcal Atomic # 7 Polarization: -97.25 SS G_CDS: -8.37 Total: -105.62 kcal Atomic # 14 Polarization: 44.32 SS G_CDS: 2.03 Total: 46.35 kcal Total: -68.04 -0.10 -68.14 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173340132.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.837 kcal (2) G-P(sol) polarization free energy of solvation -68.042 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.795 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.096 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.137 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.700 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds