Wall clock time and date at job start Tue Mar 31 2020 12:08:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09003 * 109.47107 * 2 1 4 4 C 1.53001 * 109.47179 * 240.00040 * 2 1 3 5 5 C 1.53008 * 109.47011 * 179.97438 * 4 2 1 6 6 C 1.52998 * 109.46949 * 60.00353 * 5 4 2 7 7 H 1.09003 * 109.47419 * 59.99695 * 6 5 4 8 8 C 1.53000 * 109.47116 * 180.02562 * 6 5 4 9 9 C 1.52996 * 109.47239 * 54.84955 * 8 6 5 10 10 C 1.52994 * 109.47260 * 174.85215 * 8 6 5 11 11 C 1.50704 * 109.46633 * 294.84757 * 8 6 5 12 12 C 1.38234 * 120.00368 * 352.14483 * 11 8 6 13 13 C 1.38239 * 119.99974 * 179.78814 * 12 11 8 14 14 C 1.38232 * 119.99903 * 0.45649 * 13 12 11 15 15 C 1.38240 * 119.99895 * 359.77426 * 14 13 12 16 16 C 1.38223 * 120.00200 * 0.02562 * 15 14 13 17 17 C 1.53001 * 109.46976 * 299.99668 * 6 5 4 18 18 H 1.09003 * 109.47068 * 300.00241 * 17 6 5 19 19 O 1.42896 * 109.47171 * 180.02562 * 17 6 5 20 20 C 1.42902 * 114.00287 * 150.00141 * 19 17 6 21 21 C 1.50695 * 109.47640 * 180.02562 * 20 19 17 22 22 H 1.08008 * 119.99774 * 359.97438 * 21 20 19 23 23 C 1.37878 * 120.00367 * 180.02562 * 21 20 19 24 24 N 1.31510 * 119.99944 * 179.97438 * 23 21 20 25 25 Si 1.86794 * 119.99799 * 359.97438 * 23 21 20 26 26 H 1.48495 * 109.47309 * 270.00357 * 25 23 21 27 27 H 1.48499 * 109.47223 * 30.00393 * 25 23 21 28 28 H 1.48500 * 109.47168 * 150.00173 * 25 23 21 29 29 C 1.53003 * 109.47092 * 119.99940 * 2 1 3 30 30 H 1.09003 * 109.47107 * 179.97438 * 1 2 3 31 31 H 1.08991 * 109.47219 * 299.99809 * 1 2 3 32 32 H 1.09007 * 109.47335 * 59.99994 * 1 2 3 33 33 H 1.08995 * 109.47307 * 60.00387 * 4 2 1 34 34 H 1.09000 * 109.47515 * 299.99737 * 4 2 1 35 35 H 1.08996 * 109.47189 * 299.99579 * 5 4 2 36 36 H 1.08998 * 109.46679 * 180.02562 * 5 4 2 37 37 H 1.08993 * 109.47395 * 59.99995 * 9 8 6 38 38 H 1.08997 * 109.46899 * 180.02562 * 9 8 6 39 39 H 1.09005 * 109.46816 * 299.99896 * 9 8 6 40 40 H 1.09001 * 109.47426 * 45.95345 * 10 8 6 41 41 H 1.09007 * 109.47526 * 165.95829 * 10 8 6 42 42 H 1.08998 * 109.47053 * 285.95885 * 10 8 6 43 43 H 1.07997 * 119.99775 * 359.97438 * 12 11 8 44 44 H 1.07999 * 119.99655 * 180.24690 * 13 12 11 45 45 H 1.07997 * 119.99787 * 179.79076 * 14 13 12 46 46 H 1.08001 * 119.99672 * 180.02562 * 15 14 13 47 47 H 1.08006 * 120.00322 * 179.97438 * 16 15 14 48 48 H 1.09000 * 109.46960 * 59.99761 * 20 19 17 49 49 H 1.09000 * 109.46675 * 300.00193 * 20 19 17 50 50 H 0.97005 * 120.00269 * 179.97438 * 24 23 21 51 51 H 1.09000 * 109.47073 * 60.00586 * 29 2 1 52 52 H 1.08991 * 109.47293 * 300.00205 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 3.5701 -0.7207 -1.2495 6 6 4.0805 -1.4416 -0.0003 7 1 3.7175 -2.4694 -0.0001 8 6 5.6105 -1.4405 -0.0003 9 6 6.1195 -0.0035 -0.1296 10 6 6.1209 -2.0464 1.3086 11 6 6.1134 -2.2581 -1.1620 12 6 5.2262 -2.9953 -1.9239 13 6 5.6870 -3.7418 -2.9923 14 6 7.0362 -3.7586 -3.2929 15 6 7.9239 -3.0252 -2.5281 16 6 7.4627 -2.2755 -1.4624 17 6 3.5705 -0.7204 1.2489 18 1 3.9335 0.3074 1.2487 19 8 4.0477 -1.3933 2.4157 20 6 4.2413 -0.5364 3.5427 21 6 4.7436 -1.3468 4.7097 22 1 4.8991 -2.4101 4.6016 23 6 5.0038 -0.7311 5.9156 24 7 5.4417 -1.4384 6.9341 25 14 4.7342 1.1078 6.1027 26 1 5.9823 1.8298 5.7477 27 1 3.6377 1.5417 5.2001 28 1 4.3681 1.4140 7.5089 29 6 2.0400 -0.7212 1.2493 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8899 32 1 -0.3634 0.5139 -0.8900 33 1 1.6767 -0.2074 -2.1392 34 1 1.6767 -1.7489 -1.2493 35 1 3.9330 0.3071 -1.2498 36 1 3.9333 -1.2341 -2.1397 37 1 5.7557 0.5879 0.7106 38 1 7.2094 -0.0028 -0.1300 39 1 5.7559 0.4281 -1.0622 40 1 5.5691 -2.9612 1.5251 41 1 7.1822 -2.2762 1.2132 42 1 5.9751 -1.3336 2.1202 43 1 4.1728 -2.9856 -1.6863 44 1 4.9934 -4.3145 -3.5899 45 1 7.3966 -4.3445 -4.1255 46 1 8.9780 -3.0381 -2.7632 47 1 8.1563 -1.7028 -0.8645 48 1 3.2948 -0.0652 3.8077 49 1 4.9725 0.2324 3.2931 50 1 5.6251 -1.0052 7.7825 51 1 1.6767 -1.7489 1.2492 52 1 1.6766 -0.2075 2.1392 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001205610806.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:08:42 Heat of formation + Delta-G solvation = -58.186069 kcal Electronic energy + Delta-G solvation = -28460.611035 eV Core-core repulsion = 25002.427183 eV Total energy + Delta-G solvation = -3458.183852 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.214 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.75452 -39.67144 -37.66028 -36.69716 -34.81174 -32.69921 -31.58719 -31.13929 -30.45118 -29.44433 -28.14556 -27.12889 -24.39206 -23.97403 -23.25524 -22.94602 -22.07628 -20.83320 -19.85354 -18.88550 -17.91872 -17.29989 -16.72724 -16.45274 -16.06171 -15.86189 -15.41645 -15.34347 -15.05043 -14.70234 -14.70002 -14.45836 -14.34152 -14.14662 -13.86704 -13.49869 -13.44185 -13.25696 -13.04752 -12.97117 -12.86243 -12.82660 -12.50920 -12.35636 -12.19615 -12.15684 -11.92095 -11.82274 -11.71454 -11.58381 -11.44844 -11.27108 -11.10587 -11.00409 -10.96400 -10.80380 -9.91378 -9.68954 -9.44410 -8.36003 -6.41843 0.56641 0.58983 1.30410 1.32551 1.43038 2.27926 2.96775 2.97630 3.05663 3.60633 3.65729 3.91067 4.03100 4.05614 4.12946 4.23134 4.26736 4.32499 4.33380 4.38091 4.40605 4.53026 4.59583 4.59803 4.66161 4.70618 4.77539 4.79062 4.84227 4.90580 4.91118 5.00771 5.04327 5.06472 5.11225 5.13600 5.19014 5.21616 5.23064 5.26455 5.29452 5.36208 5.42953 5.45118 5.46938 5.50666 5.62127 5.66864 5.71234 5.79214 5.88006 6.01370 6.22560 6.62586 6.83693 7.22603 8.81070 Molecular weight = 316.21amu Principal moments of inertia in cm(-1) A = 0.011562 B = 0.004774 C = 0.003676 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2421.081159 B = 5864.035167 C = 7614.398583 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.086 4.086 3 H 0.070 0.930 4 C -0.108 4.108 5 C -0.116 4.116 6 C -0.063 4.063 7 H 0.066 0.934 8 C -0.012 4.012 9 C -0.139 4.139 10 C -0.121 4.121 11 C -0.068 4.068 12 C -0.133 4.133 13 C -0.125 4.125 14 C -0.134 4.134 15 C -0.126 4.126 16 C -0.132 4.132 17 C 0.083 3.917 18 H 0.053 0.947 19 O -0.382 6.382 20 C 0.185 3.815 21 C -0.530 4.530 22 H 0.032 0.968 23 C 0.016 3.984 24 N -0.942 5.942 25 Si 0.944 3.056 26 H -0.260 1.260 27 H -0.249 1.249 28 H -0.275 1.275 29 C -0.133 4.133 30 H 0.053 0.947 31 H 0.047 0.953 32 H 0.071 0.929 33 H 0.083 0.917 34 H 0.062 0.938 35 H 0.070 0.930 36 H 0.086 0.914 37 H 0.046 0.954 38 H 0.058 0.942 39 H 0.075 0.925 40 H 0.031 0.969 41 H 0.035 0.965 42 H 0.062 0.938 43 H 0.133 0.867 44 H 0.140 0.860 45 H 0.141 0.859 46 H 0.136 0.864 47 H 0.118 0.882 48 H 0.001 0.999 49 H 0.004 0.996 50 H 0.271 0.729 51 H 0.058 0.942 52 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.162 3.285 -24.433 24.855 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.104 4.104 3 H 0.088 0.912 4 C -0.146 4.146 5 C -0.153 4.153 6 C -0.081 4.081 7 H 0.084 0.916 8 C -0.012 4.012 9 C -0.196 4.196 10 C -0.178 4.178 11 C -0.068 4.068 12 C -0.151 4.151 13 C -0.143 4.143 14 C -0.152 4.152 15 C -0.144 4.144 16 C -0.150 4.150 17 C 0.025 3.975 18 H 0.071 0.929 19 O -0.301 6.301 20 C 0.109 3.891 21 C -0.568 4.568 22 H 0.050 0.950 23 C -0.182 4.182 24 N -0.582 5.582 25 Si 0.766 3.234 26 H -0.184 1.184 27 H -0.172 1.172 28 H -0.200 1.200 29 C -0.171 4.171 30 H 0.073 0.927 31 H 0.066 0.934 32 H 0.090 0.910 33 H 0.102 0.898 34 H 0.081 0.919 35 H 0.089 0.911 36 H 0.104 0.896 37 H 0.065 0.935 38 H 0.077 0.923 39 H 0.094 0.906 40 H 0.050 0.950 41 H 0.054 0.946 42 H 0.081 0.919 43 H 0.151 0.849 44 H 0.158 0.842 45 H 0.159 0.841 46 H 0.154 0.846 47 H 0.136 0.864 48 H 0.019 0.981 49 H 0.022 0.978 50 H 0.080 0.920 51 H 0.077 0.923 52 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -3.076 3.091 -24.239 24.628 hybrid contribution 0.126 0.486 1.317 1.409 sum -2.950 3.577 -22.922 23.386 Atomic orbital electron populations 1.21791 0.94219 1.01977 1.02030 1.21089 0.96260 0.99277 0.93788 0.91158 1.21596 0.94723 1.00903 0.97352 1.21843 0.95893 1.01135 0.96431 1.21226 0.93647 0.99659 0.93569 0.91551 1.19403 0.94625 0.94931 0.92276 1.21990 1.01149 0.94507 1.01947 1.21941 0.98065 1.00948 0.96892 1.19883 0.93888 0.97344 0.95711 1.21441 1.00348 0.97332 0.95992 1.21430 0.96394 0.98956 0.97473 1.21422 0.93481 0.99780 1.00489 1.21370 1.00650 0.97020 0.95345 1.21152 0.95165 1.00414 0.98286 1.22253 0.93338 0.95769 0.86101 0.92909 1.88070 1.85549 1.36259 1.20225 1.20161 0.93870 0.90399 0.84640 1.21094 1.44516 0.95715 0.95495 0.94994 1.25728 0.93974 1.03777 0.94721 1.70029 1.46420 1.38537 1.03240 0.85762 0.80148 0.79005 0.78442 1.18439 1.17240 1.19984 1.22090 0.95524 1.00985 0.98481 0.92739 0.93366 0.90981 0.89820 0.91876 0.91095 0.89562 0.93501 0.92322 0.90632 0.94951 0.94643 0.91924 0.84945 0.84200 0.84098 0.84572 0.86392 0.98147 0.97839 0.91993 0.92315 0.93647 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.68 9.19 71.98 0.66 -2.02 16 2 C -0.09 -1.87 2.72 -10.79 -0.03 -1.90 16 3 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 4 C -0.11 -1.99 5.20 30.60 0.16 -1.83 16 5 C -0.12 -2.39 4.06 30.60 0.12 -2.27 16 6 C -0.06 -1.75 0.88 -10.79 -0.01 -1.76 16 7 H 0.07 2.00 6.80 -2.39 -0.02 1.99 16 8 C -0.01 -0.36 0.42 -52.93 -0.02 -0.38 16 9 C -0.14 -3.66 7.42 71.98 0.53 -3.13 16 10 C -0.12 -4.61 7.03 71.98 0.51 -4.10 16 11 C -0.07 -1.77 4.47 -19.86 -0.09 -1.86 16 12 C -0.13 -3.08 7.39 22.27 0.16 -2.92 16 13 C -0.12 -2.43 10.05 22.27 0.22 -2.21 16 14 C -0.13 -2.49 10.05 22.27 0.22 -2.27 16 15 C -0.13 -2.59 10.05 22.27 0.22 -2.36 16 16 C -0.13 -3.24 8.60 22.27 0.19 -3.05 16 17 C 0.08 2.80 1.73 30.61 0.05 2.86 16 18 H 0.05 1.77 6.21 -2.39 -0.01 1.75 16 19 O -0.38 -17.13 6.47 -148.98 -0.96 -18.09 16 20 C 0.19 9.22 3.61 71.23 0.26 9.48 16 21 C -0.53 -32.01 9.99 25.60 0.26 -31.75 16 22 H 0.03 2.18 8.06 -2.91 -0.02 2.15 16 23 C 0.02 0.94 5.47 84.66 0.46 1.40 16 24 N -0.94 -59.63 13.96 21.45 0.30 -59.33 16 25 Si 0.94 43.89 27.47 68.60 1.88 45.77 16 26 H -0.26 -11.45 7.11 99.48 0.71 -10.74 16 27 H -0.25 -10.78 6.54 99.48 0.65 -10.12 16 28 H -0.27 -12.35 7.11 99.48 0.71 -11.64 16 29 C -0.13 -4.01 4.82 30.61 0.15 -3.86 16 30 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 31 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 32 H 0.07 1.07 8.14 -2.38 -0.02 1.05 16 33 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 34 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 35 H 0.07 1.42 6.34 -2.39 -0.02 1.40 16 36 H 0.09 1.62 5.37 -2.39 -0.01 1.61 16 37 H 0.05 1.36 6.57 -2.39 -0.02 1.34 16 38 H 0.06 1.47 7.00 -2.39 -0.02 1.46 16 39 H 0.07 1.66 6.34 -2.38 -0.02 1.65 16 40 H 0.03 1.35 7.71 -2.39 -0.02 1.33 16 41 H 0.03 1.26 7.52 -2.38 -0.02 1.25 16 42 H 0.06 2.75 5.11 -2.39 -0.01 2.74 16 43 H 0.13 2.89 4.98 -2.91 -0.01 2.88 16 44 H 0.14 2.02 8.06 -2.91 -0.02 1.99 16 45 H 0.14 1.85 8.06 -2.91 -0.02 1.83 16 46 H 0.14 2.17 8.06 -2.91 -0.02 2.15 16 47 H 0.12 2.83 7.08 -2.91 -0.02 2.81 16 48 H 0.00 0.04 6.93 -2.39 -0.02 0.03 16 49 H 0.00 0.19 7.33 -2.39 -0.02 0.17 16 50 H 0.27 15.81 8.31 -92.70 -0.77 15.04 16 51 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 52 H 0.04 1.51 7.87 -2.39 -0.02 1.49 16 Total: -1.00 -68.50 378.47 6.08 -62.42 By element: Atomic # 1 Polarization: 22.33 SS G_CDS: 0.82 Total: 23.16 kcal Atomic # 6 Polarization: -57.96 SS G_CDS: 4.04 Total: -53.92 kcal Atomic # 7 Polarization: -59.63 SS G_CDS: 0.30 Total: -59.33 kcal Atomic # 8 Polarization: -17.13 SS G_CDS: -0.96 Total: -18.09 kcal Atomic # 14 Polarization: 43.89 SS G_CDS: 1.88 Total: 45.77 kcal Total: -68.50 6.08 -62.42 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205610806.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.236 kcal (2) G-P(sol) polarization free energy of solvation -68.502 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.266 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.080 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.422 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.186 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds