Wall clock time and date at job start Tue Mar 31 2020 12:09:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86797 * 119.99992 * 2 1 4 4 H 1.48496 * 109.47552 * 240.00177 * 3 2 1 5 5 H 1.48498 * 109.47360 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.46844 * 120.00272 * 3 2 1 7 7 C 1.37873 * 119.99953 * 180.02562 * 2 1 3 8 8 H 1.08008 * 119.99957 * 180.02562 * 7 2 1 9 9 C 1.50703 * 120.00362 * 359.97438 * 7 2 1 10 10 N 1.46901 * 109.47261 * 179.97438 * 9 7 2 11 11 C 1.46956 * 110.99737 * 169.99911 * 10 9 7 12 12 C 1.53055 * 109.36312 * 183.19004 * 11 10 9 13 13 N 1.46953 * 109.36517 * 301.60111 * 12 11 10 14 14 C 1.46896 * 111.00257 * 183.19196 * 13 12 11 15 15 C 1.52996 * 109.47438 * 170.00068 * 14 13 12 16 16 C 1.52997 * 109.47131 * 179.97438 * 15 14 13 17 17 C 1.53006 * 109.47127 * 179.97438 * 16 15 14 18 18 C 1.52997 * 109.47127 * 180.02562 * 17 16 15 19 19 C 1.50696 * 109.47055 * 179.97438 * 18 17 16 20 20 C 1.38236 * 120.00439 * 269.72412 * 19 18 17 21 21 C 1.38230 * 120.00442 * 179.76760 * 20 19 18 22 22 C 1.38238 * 119.99637 * 0.50396 * 21 20 19 23 23 C 1.38235 * 120.00062 * 359.75546 * 22 21 20 24 24 C 1.38235 * 120.00275 * 359.97438 * 23 22 21 25 25 C 1.46951 * 110.88269 * 59.31683 * 13 12 11 26 26 C 1.46953 * 111.00258 * 293.80149 * 10 9 7 27 27 H 0.96998 * 120.00138 * 359.97438 * 1 2 3 28 28 H 1.08998 * 109.46749 * 60.00173 * 9 7 2 29 29 H 1.08996 * 109.47240 * 300.00157 * 9 7 2 30 30 H 1.09003 * 109.49191 * 63.22256 * 11 10 9 31 31 H 1.09001 * 109.50720 * 303.16635 * 11 10 9 32 32 H 1.09000 * 109.48837 * 181.63050 * 12 11 10 33 33 H 1.08997 * 109.48482 * 61.56852 * 12 11 10 34 34 H 1.09000 * 109.47585 * 49.99274 * 14 13 12 35 35 H 1.09001 * 109.46551 * 289.99759 * 14 13 12 36 36 H 1.08996 * 109.47452 * 59.99844 * 15 14 13 37 37 H 1.09001 * 109.46997 * 299.99418 * 15 14 13 38 38 H 1.09001 * 109.47502 * 60.00153 * 16 15 14 39 39 H 1.09001 * 109.47289 * 299.99950 * 16 15 14 40 40 H 1.09001 * 109.47002 * 299.99574 * 17 16 15 41 41 H 1.08993 * 109.46955 * 60.00011 * 17 16 15 42 42 H 1.09001 * 109.47289 * 299.99953 * 18 17 16 43 43 H 1.09004 * 109.47261 * 59.99697 * 18 17 16 44 44 H 1.08005 * 119.99714 * 0.02562 * 20 19 18 45 45 H 1.08002 * 120.00467 * 180.23418 * 21 20 19 46 46 H 1.08002 * 119.99829 * 179.72144 * 22 21 20 47 47 H 1.08004 * 120.00233 * 179.97438 * 23 22 21 48 48 H 1.07994 * 120.00095 * 179.97438 * 24 23 22 49 49 H 1.09003 * 109.48897 * 60.65013 * 25 13 12 50 50 H 1.08998 * 109.49302 * 180.70847 * 25 13 12 51 51 H 1.09007 * 109.48844 * 296.78098 * 26 10 9 52 52 H 1.09000 * 109.49165 * 56.84313 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2842 2.7465 0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 7 2.2057 -3.6157 -0.0018 11 6 1.5211 -4.8941 0.2364 12 6 2.5567 -6.0189 0.3068 13 7 3.3188 -6.0588 -0.9490 14 6 4.2734 -7.1754 -0.9503 15 6 4.8653 -7.3388 -2.3516 16 6 5.8600 -8.5013 -2.3527 17 6 6.4515 -8.6652 -3.7543 18 6 7.4456 -9.8281 -3.7555 19 6 8.0277 -9.9899 -5.1361 20 6 7.4139 -10.8239 -6.0517 21 6 7.9451 -10.9686 -7.3196 22 6 9.0961 -10.2872 -7.6686 23 6 9.7130 -9.4572 -6.7512 24 6 9.1787 -9.3082 -5.4851 25 6 4.0033 -4.7805 -1.1873 26 6 2.9678 -3.6557 -1.2576 27 1 -0.4850 0.8400 0.0004 28 1 0.6241 -2.5567 -0.8903 29 1 0.6247 -2.5572 0.8896 30 1 0.8249 -5.0913 -0.5787 31 1 0.9740 -4.8441 1.1779 32 1 2.0489 -6.9720 0.4546 33 1 3.2364 -5.8358 1.1390 34 1 3.7597 -8.0930 -0.6635 35 1 5.0738 -6.9698 -0.2395 36 1 5.3791 -6.4213 -2.6383 37 1 4.0649 -7.5444 -3.0624 38 1 5.3466 -9.4191 -2.0659 39 1 6.6603 -8.2954 -1.6419 40 1 5.6509 -8.8714 -4.4646 41 1 6.9647 -7.7476 -4.0415 42 1 8.2463 -9.6225 -3.0450 43 1 6.9319 -10.7456 -3.4684 44 1 6.5168 -11.3594 -5.7778 45 1 7.4634 -11.6173 -8.0363 46 1 9.5137 -10.4037 -8.6578 47 1 10.6126 -8.9252 -7.0237 48 1 9.6609 -8.6602 -4.7683 49 1 4.6995 -4.5833 -0.3721 50 1 4.5503 -4.8307 -2.1287 51 1 2.2880 -3.8387 -2.0899 52 1 3.4756 -2.7026 -1.4054 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001209228845.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:09:09 Heat of formation + Delta-G solvation = 8.512906 kcal Electronic energy + Delta-G solvation = -25153.378158 eV Core-core repulsion = 21730.379342 eV Total energy + Delta-G solvation = -3422.998816 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -39.64464 -38.82612 -36.46934 -34.98984 -32.97071 -32.16788 -31.21008 -30.42503 -29.68929 -27.73507 -25.86199 -24.27441 -23.17027 -22.89777 -22.21639 -21.33882 -21.06372 -20.68996 -19.12005 -17.08713 -16.29231 -16.12965 -15.85437 -15.46370 -15.32624 -14.62278 -14.53269 -14.33959 -14.17247 -13.82688 -13.78249 -13.67339 -13.53233 -13.26191 -13.06032 -12.62982 -12.23558 -12.09132 -11.95445 -11.80844 -11.51928 -11.41105 -11.27275 -11.15572 -10.97405 -10.89830 -10.81089 -10.72422 -10.60692 -10.51502 -10.25577 -10.19510 -9.65468 -9.24858 -9.16205 -8.98879 -8.41445 -8.06999 -7.18802 -6.00380 -4.01834 1.03286 1.07348 3.34660 3.38552 3.41475 3.45231 4.07049 4.41514 4.44116 4.48393 4.67139 4.74275 4.78557 4.84498 4.95192 4.98520 5.03320 5.18804 5.21664 5.31418 5.34718 5.35894 5.43525 5.45599 5.60484 5.61567 5.63583 5.69589 5.73964 5.78224 5.79908 5.86134 5.89198 5.95459 6.01287 6.11077 6.14740 6.16572 6.19286 6.26076 6.30693 6.33684 6.48233 6.64575 6.68768 6.73168 7.24176 7.32692 7.39387 7.43117 7.82382 8.12338 8.24604 8.58593 9.05388 9.62166 11.10446 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.018510 B = 0.001791 C = 0.001683 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1512.358778 B =15628.275354 C =16632.445513 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.055 3.945 3 Si 0.898 3.102 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.277 1.277 7 C -0.507 4.507 8 H 0.062 0.938 9 C 0.193 3.807 10 N -0.539 5.539 11 C 0.056 3.944 12 C 0.062 3.938 13 N -0.541 5.541 14 C 0.056 3.944 15 C -0.116 4.116 16 C -0.117 4.117 17 C -0.112 4.112 18 C -0.082 4.082 19 C -0.079 4.079 20 C -0.119 4.119 21 C -0.119 4.119 22 C -0.128 4.128 23 C -0.119 4.119 24 C -0.119 4.119 25 C 0.057 3.943 26 C 0.067 3.933 27 H 0.261 0.739 28 H -0.009 1.009 29 H 0.029 0.971 30 H 0.030 0.970 31 H 0.071 0.929 32 H 0.068 0.932 33 H 0.037 0.963 34 H 0.068 0.932 35 H 0.029 0.971 36 H 0.063 0.937 37 H 0.069 0.931 38 H 0.061 0.939 39 H 0.060 0.940 40 H 0.064 0.936 41 H 0.063 0.937 42 H 0.071 0.929 43 H 0.071 0.929 44 H 0.121 0.879 45 H 0.120 0.880 46 H 0.119 0.881 47 H 0.120 0.880 48 H 0.121 0.879 49 H 0.036 0.964 50 H 0.071 0.929 51 H 0.028 0.972 52 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.340 -23.432 -10.437 30.414 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.146 4.146 3 Si 0.726 3.274 4 H -0.203 1.203 5 H -0.214 1.214 6 H -0.202 1.202 7 C -0.546 4.546 8 H 0.080 0.920 9 C 0.068 3.932 10 N -0.264 5.264 11 C -0.073 4.073 12 C -0.066 4.066 13 N -0.266 5.266 14 C -0.072 4.072 15 C -0.154 4.154 16 C -0.155 4.155 17 C -0.150 4.150 18 C -0.120 4.120 19 C -0.079 4.079 20 C -0.137 4.137 21 C -0.137 4.137 22 C -0.146 4.146 23 C -0.137 4.137 24 C -0.137 4.137 25 C -0.071 4.071 26 C -0.061 4.061 27 H 0.071 0.929 28 H 0.009 0.991 29 H 0.048 0.952 30 H 0.048 0.952 31 H 0.089 0.911 32 H 0.087 0.913 33 H 0.055 0.945 34 H 0.087 0.913 35 H 0.047 0.953 36 H 0.082 0.918 37 H 0.088 0.912 38 H 0.080 0.920 39 H 0.079 0.921 40 H 0.082 0.918 41 H 0.082 0.918 42 H 0.090 0.910 43 H 0.090 0.910 44 H 0.139 0.861 45 H 0.138 0.862 46 H 0.137 0.863 47 H 0.138 0.862 48 H 0.139 0.861 49 H 0.055 0.945 50 H 0.090 0.910 51 H 0.046 0.954 52 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 16.164 -23.293 -10.420 30.206 hybrid contribution 0.366 0.951 -0.045 1.020 sum 16.530 -22.341 -10.466 29.697 Atomic orbital electron populations 1.69950 1.06048 1.26836 1.50975 1.24990 0.94870 0.99283 0.95486 0.86559 0.79428 0.82787 0.78610 1.20283 1.21372 1.20218 1.21121 0.93399 0.89993 1.50097 0.92009 1.19698 0.90066 0.87315 0.96093 1.62274 1.28171 1.02740 1.33228 1.22062 0.94778 0.90040 1.00388 1.22139 0.96089 0.98433 0.89989 1.62166 1.26048 1.03509 1.34866 1.22074 0.94107 0.94449 0.96535 1.21596 0.98383 0.98203 0.97225 1.21568 0.98588 0.98747 0.96634 1.21563 0.98138 0.97804 0.97448 1.20663 0.98909 0.99557 0.92853 1.19974 0.95177 0.96435 0.96285 1.21080 0.99973 0.99023 0.93608 1.21160 0.96352 0.99691 0.96492 1.21151 0.96290 0.97669 0.99538 1.21166 0.99979 0.98718 0.93805 1.21090 0.96121 0.99714 0.96741 1.22279 0.96085 0.88698 1.00080 1.21989 0.95478 0.97438 0.91238 0.92898 0.99080 0.95249 0.95195 0.91100 0.91340 0.94463 0.91325 0.95257 0.91829 0.91215 0.91991 0.92104 0.91752 0.91791 0.90995 0.90994 0.86119 0.86170 0.86264 0.86155 0.86101 0.94532 0.91049 0.95393 0.89672 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.98 13.29 55.43 0.74 -26.24 16 2 C 0.05 1.58 5.46 -17.82 -0.10 1.48 16 3 Si 0.90 21.81 29.54 -169.99 -5.02 16.79 16 4 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 5 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 6 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 7 C -0.51 -14.44 8.47 -34.44 -0.29 -14.73 16 8 H 0.06 1.73 7.13 -52.48 -0.37 1.36 16 9 C 0.19 5.16 4.72 -4.97 -0.02 5.14 16 10 N -0.54 -12.03 4.70 -235.91 -1.11 -13.14 16 11 C 0.06 1.07 5.61 -3.77 -0.02 1.04 16 12 C 0.06 0.96 5.61 -3.77 -0.02 0.94 16 13 N -0.54 -8.22 4.71 -234.48 -1.10 -9.32 16 14 C 0.06 0.67 4.96 -3.83 -0.02 0.65 16 15 C -0.12 -1.20 5.15 -26.73 -0.14 -1.33 16 16 C -0.12 -0.94 5.21 -26.73 -0.14 -1.08 16 17 C -0.11 -0.86 5.20 -26.73 -0.14 -1.00 16 18 C -0.08 -0.57 5.35 -27.89 -0.15 -0.72 16 19 C -0.08 -0.63 5.13 -104.62 -0.54 -1.17 16 20 C -0.12 -0.93 9.70 -39.59 -0.38 -1.31 16 21 C -0.12 -0.88 10.05 -39.58 -0.40 -1.27 16 22 C -0.13 -0.93 10.05 -39.58 -0.40 -1.33 16 23 C -0.12 -0.89 10.05 -39.58 -0.40 -1.28 16 24 C -0.12 -0.94 9.70 -39.58 -0.38 -1.32 16 25 C 0.06 0.93 5.41 -3.77 -0.02 0.91 16 26 C 0.07 1.36 5.43 -3.77 -0.02 1.34 16 27 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 28 H -0.01 -0.25 8.12 -51.93 -0.42 -0.67 16 29 H 0.03 0.83 8.03 -51.93 -0.42 0.42 16 30 H 0.03 0.59 8.14 -51.93 -0.42 0.16 16 31 H 0.07 1.30 8.07 -51.93 -0.42 0.88 16 32 H 0.07 0.92 8.07 -51.93 -0.42 0.50 16 33 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.07 0.75 8.03 -51.93 -0.42 0.34 16 35 H 0.03 0.35 8.12 -51.93 -0.42 -0.07 16 36 H 0.06 0.70 6.49 -51.93 -0.34 0.36 16 37 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 38 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 39 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 40 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 41 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 42 H 0.07 0.47 8.09 -51.93 -0.42 0.05 16 43 H 0.07 0.46 8.08 -51.93 -0.42 0.04 16 44 H 0.12 0.77 8.06 -52.48 -0.42 0.35 16 45 H 0.12 0.66 8.06 -52.49 -0.42 0.23 16 46 H 0.12 0.64 8.06 -52.49 -0.42 0.21 16 47 H 0.12 0.68 8.06 -52.48 -0.42 0.25 16 48 H 0.12 0.80 8.06 -52.49 -0.42 0.38 16 49 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 50 H 0.07 1.04 6.34 -51.93 -0.33 0.71 16 51 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 52 H 0.09 1.83 6.79 -51.93 -0.35 1.48 16 LS Contribution 408.03 15.07 6.15 6.15 Total: -1.00 -30.76 408.03 -13.73 -44.49 By element: Atomic # 1 Polarization: 6.14 SS G_CDS: -9.80 Total: -3.67 kcal Atomic # 6 Polarization: -11.48 SS G_CDS: -3.58 Total: -15.06 kcal Atomic # 7 Polarization: -47.23 SS G_CDS: -1.48 Total: -48.71 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.79 kcal Total LS contribution 6.15 Total: 6.15 kcal Total: -30.76 -13.73 -44.49 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001209228845.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.007 kcal (2) G-P(sol) polarization free energy of solvation -30.765 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.242 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -13.729 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.494 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.513 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds