Wall clock time and date at job start Tue Mar 31 2020 12:09:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86797 * 119.99992 * 2 1 4 4 H 1.48496 * 109.47552 * 240.00177 * 3 2 1 5 5 H 1.48498 * 109.47360 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.46844 * 120.00272 * 3 2 1 7 7 C 1.37873 * 119.99953 * 180.02562 * 2 1 3 8 8 H 1.08008 * 119.99957 * 180.02562 * 7 2 1 9 9 C 1.50703 * 120.00362 * 359.97438 * 7 2 1 10 10 N 1.46901 * 109.47261 * 179.97438 * 9 7 2 11 11 C 1.46956 * 110.99737 * 169.99911 * 10 9 7 12 12 C 1.53055 * 109.36312 * 183.19004 * 11 10 9 13 13 N 1.46953 * 109.36517 * 301.60111 * 12 11 10 14 14 C 1.46896 * 111.00257 * 183.19196 * 13 12 11 15 15 C 1.52996 * 109.47438 * 170.00068 * 14 13 12 16 16 C 1.52997 * 109.47131 * 179.97438 * 15 14 13 17 17 C 1.53006 * 109.47127 * 179.97438 * 16 15 14 18 18 C 1.52997 * 109.47127 * 180.02562 * 17 16 15 19 19 C 1.50696 * 109.47055 * 179.97438 * 18 17 16 20 20 C 1.38236 * 120.00439 * 269.72412 * 19 18 17 21 21 C 1.38230 * 120.00442 * 179.76760 * 20 19 18 22 22 C 1.38238 * 119.99637 * 0.50396 * 21 20 19 23 23 C 1.38235 * 120.00062 * 359.75546 * 22 21 20 24 24 C 1.38235 * 120.00275 * 359.97438 * 23 22 21 25 25 C 1.46951 * 110.88269 * 59.31683 * 13 12 11 26 26 C 1.46953 * 111.00258 * 293.80149 * 10 9 7 27 27 H 0.96998 * 120.00138 * 359.97438 * 1 2 3 28 28 H 1.08998 * 109.46749 * 60.00173 * 9 7 2 29 29 H 1.08996 * 109.47240 * 300.00157 * 9 7 2 30 30 H 1.09003 * 109.49191 * 63.22256 * 11 10 9 31 31 H 1.09001 * 109.50720 * 303.16635 * 11 10 9 32 32 H 1.09000 * 109.48837 * 181.63050 * 12 11 10 33 33 H 1.08997 * 109.48482 * 61.56852 * 12 11 10 34 34 H 1.09000 * 109.47585 * 49.99274 * 14 13 12 35 35 H 1.09001 * 109.46551 * 289.99759 * 14 13 12 36 36 H 1.08996 * 109.47452 * 59.99844 * 15 14 13 37 37 H 1.09001 * 109.46997 * 299.99418 * 15 14 13 38 38 H 1.09001 * 109.47502 * 60.00153 * 16 15 14 39 39 H 1.09001 * 109.47289 * 299.99950 * 16 15 14 40 40 H 1.09001 * 109.47002 * 299.99574 * 17 16 15 41 41 H 1.08993 * 109.46955 * 60.00011 * 17 16 15 42 42 H 1.09001 * 109.47289 * 299.99953 * 18 17 16 43 43 H 1.09004 * 109.47261 * 59.99697 * 18 17 16 44 44 H 1.08005 * 119.99714 * 0.02562 * 20 19 18 45 45 H 1.08002 * 120.00467 * 180.23418 * 21 20 19 46 46 H 1.08002 * 119.99829 * 179.72144 * 22 21 20 47 47 H 1.08004 * 120.00233 * 179.97438 * 23 22 21 48 48 H 1.07994 * 120.00095 * 179.97438 * 24 23 22 49 49 H 1.09003 * 109.48897 * 60.65013 * 25 13 12 50 50 H 1.08998 * 109.49302 * 180.70847 * 25 13 12 51 51 H 1.09007 * 109.48844 * 296.78098 * 26 10 9 52 52 H 1.09000 * 109.49165 * 56.84313 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2842 2.7465 0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 7 2.2057 -3.6157 -0.0018 11 6 1.5211 -4.8941 0.2364 12 6 2.5567 -6.0189 0.3068 13 7 3.3188 -6.0588 -0.9490 14 6 4.2734 -7.1754 -0.9503 15 6 4.8653 -7.3388 -2.3516 16 6 5.8600 -8.5013 -2.3527 17 6 6.4515 -8.6652 -3.7543 18 6 7.4456 -9.8281 -3.7555 19 6 8.0277 -9.9899 -5.1361 20 6 7.4139 -10.8239 -6.0517 21 6 7.9451 -10.9686 -7.3196 22 6 9.0961 -10.2872 -7.6686 23 6 9.7130 -9.4572 -6.7512 24 6 9.1787 -9.3082 -5.4851 25 6 4.0033 -4.7805 -1.1873 26 6 2.9678 -3.6557 -1.2576 27 1 -0.4850 0.8400 0.0004 28 1 0.6241 -2.5567 -0.8903 29 1 0.6247 -2.5572 0.8896 30 1 0.8249 -5.0913 -0.5787 31 1 0.9740 -4.8441 1.1779 32 1 2.0489 -6.9720 0.4546 33 1 3.2364 -5.8358 1.1390 34 1 3.7597 -8.0930 -0.6635 35 1 5.0738 -6.9698 -0.2395 36 1 5.3791 -6.4213 -2.6383 37 1 4.0649 -7.5444 -3.0624 38 1 5.3466 -9.4191 -2.0659 39 1 6.6603 -8.2954 -1.6419 40 1 5.6509 -8.8714 -4.4646 41 1 6.9647 -7.7476 -4.0415 42 1 8.2463 -9.6225 -3.0450 43 1 6.9319 -10.7456 -3.4684 44 1 6.5168 -11.3594 -5.7778 45 1 7.4634 -11.6173 -8.0363 46 1 9.5137 -10.4037 -8.6578 47 1 10.6126 -8.9252 -7.0237 48 1 9.6609 -8.6602 -4.7683 49 1 4.6995 -4.5833 -0.3721 50 1 4.5503 -4.8307 -2.1287 51 1 2.2880 -3.8387 -2.0899 52 1 3.4756 -2.7026 -1.4054 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001209228845.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:09:09 Heat of formation + Delta-G solvation = -8.007520 kcal Electronic energy + Delta-G solvation = -25154.094537 eV Core-core repulsion = 21730.379342 eV Total energy + Delta-G solvation = -3423.715196 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.27074 -40.11989 -37.51768 -36.17120 -34.66398 -33.35985 -31.85912 -31.73489 -30.74293 -29.24314 -27.19443 -25.51325 -24.63987 -23.49174 -23.42845 -22.71626 -21.71360 -21.49794 -20.61712 -18.49092 -17.60785 -17.26611 -16.82587 -16.44243 -16.13665 -16.00620 -15.84517 -15.64199 -15.46525 -15.17640 -14.99478 -14.38910 -14.34647 -14.17390 -14.15535 -13.91786 -13.47802 -13.27775 -13.13491 -12.85915 -12.78405 -12.66648 -12.52655 -12.34332 -12.21898 -12.08858 -12.03886 -11.94267 -11.79737 -11.65602 -11.55644 -11.36302 -11.18558 -11.12429 -10.62165 -9.79499 -9.54139 -9.29673 -9.03757 -8.21325 -6.32165 0.48611 0.52645 1.40372 1.44017 1.51947 2.39627 2.88419 2.96339 3.10519 3.29469 3.78789 3.95138 3.99409 4.02811 4.13249 4.19214 4.21107 4.26238 4.30329 4.33811 4.38118 4.44307 4.47819 4.62412 4.64902 4.67474 4.70954 4.72590 4.81134 4.85518 4.91533 4.97295 4.99477 5.00904 5.03537 5.08818 5.11668 5.20961 5.22207 5.24701 5.27532 5.34387 5.46929 5.55365 5.61400 5.62480 5.65858 5.78422 6.01083 6.09695 6.16401 6.17086 6.35406 6.61540 6.83182 7.37526 8.89720 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.018510 B = 0.001791 C = 0.001683 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1512.358778 B =15628.275354 C =16632.445513 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C 0.001 3.999 3 Si 0.972 3.028 4 H -0.267 1.267 5 H -0.282 1.282 6 H -0.268 1.268 7 C -0.525 4.525 8 H 0.063 0.937 9 C 0.208 3.792 10 N -0.545 5.545 11 C 0.053 3.947 12 C 0.071 3.929 13 N -0.551 5.551 14 C 0.059 3.941 15 C -0.111 4.111 16 C -0.109 4.109 17 C -0.107 4.107 18 C -0.077 4.077 19 C -0.091 4.091 20 C -0.132 4.132 21 C -0.129 4.129 22 C -0.139 4.139 23 C -0.130 4.130 24 C -0.134 4.134 25 C 0.070 3.930 26 C 0.069 3.931 27 H 0.265 0.735 28 H -0.041 1.041 29 H 0.004 0.996 30 H 0.020 0.980 31 H 0.071 0.929 32 H 0.098 0.902 33 H 0.037 0.963 34 H 0.084 0.916 35 H 0.034 0.966 36 H 0.055 0.945 37 H 0.061 0.939 38 H 0.071 0.929 39 H 0.066 0.934 40 H 0.057 0.943 41 H 0.055 0.945 42 H 0.077 0.923 43 H 0.079 0.921 44 H 0.131 0.869 45 H 0.136 0.864 46 H 0.136 0.864 47 H 0.135 0.865 48 H 0.129 0.871 49 H 0.034 0.966 50 H 0.092 0.908 51 H 0.013 0.987 52 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.223 -24.537 -10.586 32.345 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.197 4.197 3 Si 0.796 3.204 4 H -0.191 1.191 5 H -0.208 1.208 6 H -0.193 1.193 7 C -0.564 4.564 8 H 0.081 0.919 9 C 0.082 3.918 10 N -0.270 5.270 11 C -0.075 4.075 12 C -0.057 4.057 13 N -0.276 5.276 14 C -0.069 4.069 15 C -0.149 4.149 16 C -0.147 4.147 17 C -0.144 4.144 18 C -0.114 4.114 19 C -0.091 4.091 20 C -0.150 4.150 21 C -0.147 4.147 22 C -0.157 4.157 23 C -0.148 4.148 24 C -0.152 4.152 25 C -0.058 4.058 26 C -0.060 4.060 27 H 0.074 0.926 28 H -0.024 1.024 29 H 0.022 0.978 30 H 0.038 0.962 31 H 0.089 0.911 32 H 0.116 0.884 33 H 0.055 0.945 34 H 0.103 0.897 35 H 0.052 0.948 36 H 0.074 0.926 37 H 0.080 0.920 38 H 0.090 0.910 39 H 0.085 0.915 40 H 0.076 0.924 41 H 0.074 0.926 42 H 0.095 0.905 43 H 0.098 0.902 44 H 0.149 0.851 45 H 0.154 0.846 46 H 0.154 0.846 47 H 0.153 0.847 48 H 0.147 0.853 49 H 0.052 0.948 50 H 0.110 0.890 51 H 0.032 0.968 52 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 18.065 -24.431 -10.572 32.171 hybrid contribution -0.257 1.232 -0.033 1.259 sum 17.808 -23.199 -10.605 31.109 Atomic orbital electron populations 1.70085 1.07781 1.28011 1.51579 1.25952 0.95788 1.03308 0.94698 0.85397 0.78128 0.77703 0.79151 1.19148 1.20765 1.19278 1.21413 0.93568 0.91022 1.50355 0.91917 1.19358 0.90115 0.89075 0.93281 1.62219 1.27319 1.03086 1.34366 1.22177 0.95795 0.89644 0.99926 1.22065 0.95326 0.98072 0.90249 1.62163 1.27097 1.03755 1.34610 1.22163 0.93648 0.93488 0.97559 1.21546 0.98496 0.98827 0.96032 1.21491 0.98181 0.98141 0.96865 1.21485 0.98021 0.97788 0.97123 1.20623 0.98838 0.99481 0.92505 1.20166 0.95432 0.96673 0.96868 1.21318 1.00501 0.99293 0.93917 1.21451 0.96539 0.99922 0.96808 1.21449 0.96363 0.97489 1.00375 1.21445 1.00603 0.98912 0.93818 1.21315 0.96444 1.00105 0.97289 1.22102 0.94550 0.87999 1.01156 1.21981 0.95745 0.98515 0.89760 0.92649 1.02363 0.97778 0.96215 0.91073 0.88359 0.94499 0.89730 0.94783 0.92608 0.92018 0.90984 0.91517 0.92376 0.92619 0.90457 0.90232 0.85135 0.84602 0.84603 0.84720 0.85328 0.94767 0.88955 0.96835 0.91451 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.34 13.29 21.45 0.28 -57.05 16 2 C 0.00 0.03 5.46 84.65 0.46 0.50 16 3 Si 0.97 44.88 29.54 68.60 2.03 46.91 16 4 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 5 H -0.28 -12.69 7.11 99.48 0.71 -11.99 16 6 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 7 C -0.53 -30.60 8.47 25.60 0.22 -30.39 16 8 H 0.06 3.56 7.13 -2.91 -0.02 3.54 16 9 C 0.21 11.61 4.72 85.56 0.40 12.02 16 10 N -0.54 -24.92 4.70 -900.27 -4.23 -29.15 16 11 C 0.05 2.02 5.61 86.31 0.48 2.51 16 12 C 0.07 2.09 5.61 86.31 0.48 2.58 16 13 N -0.55 -15.70 4.71 -895.75 -4.22 -19.92 16 14 C 0.06 1.23 4.96 86.30 0.43 1.65 16 15 C -0.11 -2.04 5.15 30.59 0.16 -1.88 16 16 C -0.11 -1.48 5.21 30.60 0.16 -1.32 16 17 C -0.11 -1.47 5.20 30.60 0.16 -1.31 16 18 C -0.08 -0.95 5.35 29.85 0.16 -0.79 16 19 C -0.09 -1.37 5.13 -19.87 -0.10 -1.47 16 20 C -0.13 -1.92 9.70 22.27 0.22 -1.71 16 21 C -0.13 -1.76 10.05 22.27 0.22 -1.54 16 22 C -0.14 -1.86 10.05 22.27 0.22 -1.64 16 23 C -0.13 -1.81 10.05 22.27 0.22 -1.59 16 24 C -0.13 -2.00 9.70 22.27 0.22 -1.78 16 25 C 0.07 2.21 5.41 86.31 0.47 2.68 16 26 C 0.07 2.82 5.43 86.31 0.47 3.29 16 27 H 0.26 15.26 8.31 -92.71 -0.77 14.49 16 28 H -0.04 -2.52 8.12 -2.39 -0.02 -2.54 16 29 H 0.00 0.25 8.03 -2.39 -0.02 0.23 16 30 H 0.02 0.79 8.14 -2.39 -0.02 0.77 16 31 H 0.07 2.66 8.07 -2.39 -0.02 2.64 16 32 H 0.10 2.35 8.07 -2.39 -0.02 2.33 16 33 H 0.04 1.11 8.14 -2.39 -0.02 1.09 16 34 H 0.08 1.54 8.03 -2.39 -0.02 1.52 16 35 H 0.03 0.71 8.12 -2.39 -0.02 0.69 16 36 H 0.06 1.11 6.49 -2.39 -0.02 1.09 16 37 H 0.06 1.24 8.14 -2.39 -0.02 1.23 16 38 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 39 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 40 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 41 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 42 H 0.08 0.86 8.09 -2.39 -0.02 0.84 16 43 H 0.08 0.85 8.08 -2.38 -0.02 0.83 16 44 H 0.13 1.52 8.06 -2.91 -0.02 1.49 16 45 H 0.14 1.30 8.06 -2.91 -0.02 1.27 16 46 H 0.14 1.25 8.06 -2.91 -0.02 1.23 16 47 H 0.13 1.36 8.06 -2.91 -0.02 1.34 16 48 H 0.13 1.59 8.06 -2.91 -0.02 1.57 16 49 H 0.03 1.11 8.14 -2.39 -0.02 1.09 16 50 H 0.09 2.54 6.34 -2.39 -0.02 2.52 16 51 H 0.01 0.58 8.14 -2.38 -0.02 0.57 16 52 H 0.07 2.97 6.79 -2.39 -0.02 2.95 16 Total: -1.00 -67.31 408.03 -0.25 -67.57 By element: Atomic # 1 Polarization: 11.00 SS G_CDS: 0.84 Total: 11.84 kcal Atomic # 6 Polarization: -25.23 SS G_CDS: 5.05 Total: -20.18 kcal Atomic # 7 Polarization: -97.96 SS G_CDS: -8.17 Total: -106.13 kcal Atomic # 14 Polarization: 44.88 SS G_CDS: 2.03 Total: 46.91 kcal Total: -67.31 -0.25 -67.57 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001209228845.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.558 kcal (2) G-P(sol) polarization free energy of solvation -67.314 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.756 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.252 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.566 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.008 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds