Wall clock time and date at job start Tue Mar 31 2020 12:09:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13596 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 C 1.53009 * 109.47017 * 131.05017 * 3 2 1 5 5 N 1.46895 * 109.46914 * 174.87118 * 4 3 2 6 6 C 1.46902 * 110.99396 * 199.75449 * 5 4 3 7 7 C 1.50700 * 109.47619 * 66.04662 * 6 5 4 8 8 H 1.07994 * 119.99539 * 359.97438 * 7 6 5 9 9 C 1.37872 * 119.99853 * 180.02562 * 7 6 5 10 10 N 1.31513 * 120.00761 * 359.97438 * 9 7 6 11 11 Si 1.86809 * 119.99578 * 179.97438 * 9 7 6 12 12 H 1.48495 * 109.47156 * 359.97438 * 11 9 7 13 13 H 1.48504 * 109.47106 * 119.99993 * 11 9 7 14 14 H 1.48504 * 109.46923 * 239.99678 * 11 9 7 15 15 C 1.46897 * 111.00527 * 75.80048 * 5 4 3 16 16 C 1.52993 * 109.47342 * 199.64313 * 15 5 4 17 17 C 1.53000 * 109.47353 * 175.11605 * 16 15 5 18 18 C 1.53003 * 109.47381 * 59.99690 * 17 16 15 19 19 C 1.53000 * 109.47052 * 180.02562 * 18 17 16 20 20 C 1.53004 * 109.46982 * 60.00320 * 19 18 17 21 21 C 1.53003 * 109.46966 * 299.99732 * 20 19 18 22 22 C 1.53006 * 109.47017 * 299.99852 * 21 20 19 23 23 C 1.53002 * 109.46642 * 60.00453 * 22 21 20 24 24 C 1.52993 * 109.47364 * 300.00115 * 19 18 17 25 25 C 1.53000 * 109.47589 * 59.99901 * 23 22 21 26 26 C 1.52999 * 109.46722 * 299.99666 * 17 16 15 27 27 H 1.08994 * 109.47833 * 11.04622 * 3 2 1 28 28 H 1.09006 * 109.47355 * 251.04299 * 3 2 1 29 29 H 1.08992 * 109.47016 * 54.86674 * 4 3 2 30 30 H 1.08998 * 109.46743 * 294.86804 * 4 3 2 31 31 H 1.09013 * 109.46987 * 186.04711 * 6 5 4 32 32 H 1.09002 * 109.47307 * 306.03599 * 6 5 4 33 33 H 0.97000 * 120.00440 * 179.97438 * 10 9 7 34 34 H 1.08998 * 109.47491 * 79.63720 * 15 5 4 35 35 H 1.09005 * 109.46981 * 319.63975 * 15 5 4 36 36 H 1.08999 * 109.47582 * 55.11499 * 16 15 5 37 37 H 1.08999 * 109.47451 * 295.11504 * 16 15 5 38 38 H 1.08996 * 109.46518 * 300.00442 * 18 17 16 39 39 H 1.09002 * 109.46421 * 60.00109 * 18 17 16 40 40 H 1.08999 * 109.46534 * 179.97438 * 19 18 17 41 41 H 1.08996 * 109.46778 * 179.97438 * 20 19 18 42 42 H 1.08996 * 109.47102 * 59.99450 * 20 19 18 43 43 H 1.08997 * 109.46767 * 180.02562 * 21 20 19 44 44 H 1.08996 * 109.47476 * 300.00448 * 22 21 20 45 45 H 1.08998 * 109.46779 * 180.02562 * 22 21 20 46 46 H 1.09005 * 109.46716 * 179.97438 * 23 22 21 47 47 H 1.09010 * 109.47034 * 300.00451 * 24 19 18 48 48 H 1.08996 * 109.47256 * 180.02562 * 24 19 18 49 49 H 1.08994 * 109.47358 * 179.97438 * 25 23 22 50 50 H 1.08995 * 109.46787 * 59.99489 * 25 23 22 51 51 H 1.08995 * 109.47641 * 299.99848 * 26 17 16 52 52 H 1.09002 * 109.47155 * 60.00417 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1175 0.9483 -1.0879 5 7 4.5812 1.0435 -1.0080 6 6 5.0677 2.2531 -1.6848 7 6 4.5879 3.4726 -0.9407 8 1 3.9818 3.3603 -0.0539 9 6 4.9218 4.7316 -1.3926 10 7 5.6595 4.8685 -2.4728 11 14 4.3265 6.2433 -0.4705 12 1 3.5191 5.8216 0.7022 13 1 5.4957 7.0339 -0.0088 14 1 3.4909 7.0761 -1.3726 15 6 5.2181 -0.1602 -1.5589 16 6 6.6524 -0.2627 -1.0367 17 6 7.2754 -1.5770 -1.5115 18 6 7.2856 -1.6134 -3.0410 19 6 7.9080 -2.9280 -3.5157 20 6 7.0856 -4.1032 -2.9832 21 6 7.0753 -4.0668 -1.4536 22 6 8.5098 -4.1700 -0.9314 23 6 9.3321 -2.9948 -1.4640 24 6 9.3423 -3.0312 -2.9935 25 6 8.7098 -1.6801 -0.9892 26 6 6.4535 -2.7525 -0.9789 27 1 2.9718 -1.0077 -0.1969 28 1 2.9712 0.3347 0.9720 29 1 2.6806 1.9362 -0.9430 30 1 2.8313 0.5645 -2.0671 31 1 6.1576 2.2450 -1.7046 32 1 4.6861 2.2768 -2.7056 33 1 5.8941 5.7543 -2.7909 34 1 5.2310 -0.0988 -2.6470 35 1 4.6556 -1.0419 -1.2514 36 1 6.6452 -0.2369 0.0530 37 1 7.2380 0.5747 -1.4160 38 1 6.2637 -1.5404 -3.4129 39 1 7.8711 -0.7759 -3.4204 40 1 7.9148 -2.9541 -4.6054 41 1 7.5287 -5.0397 -3.3217 42 1 6.0637 -4.0297 -3.3552 43 1 6.4898 -4.9043 -1.0743 44 1 8.9532 -5.1065 -1.2696 45 1 8.5024 -4.1446 0.1583 46 1 10.3539 -3.0680 -1.0916 47 1 9.9282 -2.1938 -3.3729 48 1 9.7858 -3.9675 -3.3321 49 1 9.2959 -0.8430 -1.3683 50 1 8.7025 -1.6543 0.1004 51 1 6.4462 -2.7267 0.1108 52 1 5.4316 -2.6795 -1.3509 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001209447163.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:09:07 Heat of formation + Delta-G solvation = -13.977824 kcal Electronic energy + Delta-G solvation = -27823.615753 eV Core-core repulsion = 24399.641666 eV Total energy + Delta-G solvation = -3423.974087 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.50989 -37.61854 -36.19865 -34.29138 -32.69596 -32.61244 -32.60678 -30.90699 -28.42491 -26.23472 -25.93046 -25.90934 -23.30282 -22.92924 -21.46919 -21.41236 -20.15437 -19.27343 -17.48738 -17.24254 -16.43405 -15.10711 -15.03363 -14.65276 -14.55563 -14.46464 -14.37670 -14.20741 -14.07901 -13.71250 -13.44035 -13.29251 -13.03140 -12.75852 -12.53485 -12.38110 -12.35727 -12.15753 -11.99481 -11.81446 -11.50424 -11.37730 -11.06864 -11.02461 -10.87399 -10.81086 -10.73749 -10.69558 -10.63234 -10.52841 -10.42569 -10.11813 -9.77632 -9.54518 -9.52788 -9.46495 -9.16236 -8.46187 -7.33781 -6.05529 -4.06752 2.98877 3.02848 3.29765 3.38019 3.42092 4.20107 4.42161 4.49120 4.50030 4.52061 4.94385 5.06248 5.11459 5.20708 5.22828 5.23192 5.30450 5.35359 5.36254 5.36927 5.39863 5.43927 5.55760 5.64522 5.69162 5.73413 5.77022 5.79309 5.82602 5.94434 5.97355 5.99826 6.04777 6.10159 6.11300 6.16960 6.17778 6.22637 6.24710 6.29271 6.44679 6.47006 6.49583 6.58325 6.61044 6.74894 6.81733 7.24539 7.31180 7.76443 7.81099 8.04796 8.13279 8.49753 9.01258 9.58070 11.05125 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.012158 B = 0.003808 C = 0.003118 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2302.523497 B = 7350.553443 C = 8978.946553 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.458 5.458 2 C 0.219 3.781 3 C -0.026 4.026 4 C 0.065 3.935 5 N -0.535 5.535 6 C 0.194 3.806 7 C -0.509 4.509 8 H 0.064 0.936 9 C 0.057 3.943 10 N -0.897 5.897 11 Si 0.893 3.107 12 H -0.272 1.272 13 H -0.284 1.284 14 H -0.286 1.286 15 C 0.052 3.948 16 C -0.100 4.100 17 C -0.050 4.050 18 C -0.104 4.104 19 C -0.087 4.087 20 C -0.106 4.106 21 C -0.087 4.087 22 C -0.106 4.106 23 C -0.086 4.086 24 C -0.107 4.107 25 C -0.101 4.101 26 C -0.102 4.102 27 H 0.099 0.901 28 H 0.116 0.884 29 H 0.094 0.906 30 H 0.028 0.972 31 H 0.036 0.964 32 H -0.010 1.010 33 H 0.260 0.740 34 H 0.028 0.972 35 H 0.061 0.939 36 H 0.068 0.932 37 H 0.066 0.934 38 H 0.064 0.936 39 H 0.062 0.938 40 H 0.064 0.936 41 H 0.055 0.945 42 H 0.060 0.940 43 H 0.064 0.936 44 H 0.055 0.945 45 H 0.059 0.941 46 H 0.064 0.936 47 H 0.060 0.940 48 H 0.055 0.945 49 H 0.062 0.938 50 H 0.061 0.939 51 H 0.062 0.938 52 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.480 -18.932 0.707 20.369 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.135 5.135 2 C -0.099 4.099 3 C -0.067 4.067 4 C -0.065 4.065 5 N -0.259 5.259 6 C 0.070 3.930 7 C -0.548 4.548 8 H 0.083 0.917 9 C -0.144 4.144 10 N -0.537 5.537 11 Si 0.721 3.279 12 H -0.196 1.196 13 H -0.210 1.210 14 H -0.212 1.212 15 C -0.077 4.077 16 C -0.138 4.138 17 C -0.050 4.050 18 C -0.141 4.141 19 C -0.105 4.105 20 C -0.144 4.144 21 C -0.105 4.105 22 C -0.144 4.144 23 C -0.104 4.104 24 C -0.144 4.144 25 C -0.139 4.139 26 C -0.140 4.140 27 H 0.117 0.883 28 H 0.134 0.866 29 H 0.112 0.888 30 H 0.046 0.954 31 H 0.054 0.946 32 H 0.008 0.992 33 H 0.070 0.930 34 H 0.046 0.954 35 H 0.079 0.921 36 H 0.087 0.913 37 H 0.085 0.915 38 H 0.083 0.917 39 H 0.081 0.919 40 H 0.083 0.917 41 H 0.074 0.926 42 H 0.078 0.922 43 H 0.082 0.918 44 H 0.074 0.926 45 H 0.078 0.922 46 H 0.082 0.918 47 H 0.079 0.921 48 H 0.074 0.926 49 H 0.080 0.920 50 H 0.080 0.920 51 H 0.080 0.920 52 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 5.993 -18.748 1.087 19.713 hybrid contribution 0.042 0.904 -0.523 1.045 sum 6.035 -17.844 0.564 18.846 Atomic orbital electron populations 1.81158 1.13302 1.09559 1.09522 1.29414 0.95488 0.92462 0.92505 1.19427 0.80375 1.02747 1.04124 1.21867 0.90555 0.99836 0.94244 1.62035 1.03015 1.03266 1.57554 1.19752 0.96165 0.85217 0.91901 1.21211 1.32302 0.89990 1.11275 0.91734 1.24959 0.95280 0.99099 0.95080 1.69957 1.37605 1.23131 1.22970 0.86518 0.78545 0.82952 0.79880 1.19626 1.21018 1.21193 1.22218 0.95260 0.93413 0.96764 1.21560 0.95492 0.95561 1.01220 1.20442 0.94662 0.95056 0.94869 1.21626 1.00923 0.96452 0.95148 1.21059 0.94917 0.95456 0.99067 1.21524 0.99841 0.97696 0.95338 1.21054 0.96129 0.97880 0.95433 1.21523 0.95258 0.97626 0.99951 1.21047 0.98532 0.95396 0.95434 1.21527 0.96424 1.01161 0.95335 1.21549 0.95494 0.96579 1.00237 1.21616 0.98802 0.93301 1.00240 0.88342 0.86619 0.88805 0.95372 0.94606 0.99195 0.92990 0.95408 0.92055 0.91330 0.91547 0.91723 0.91927 0.91735 0.92596 0.92165 0.91767 0.92597 0.92182 0.91755 0.92104 0.92585 0.91962 0.92037 0.91972 0.91721 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.46 -7.86 18.54 42.15 0.78 -7.08 16 2 C 0.22 3.21 15.43 -20.76 -0.32 2.89 16 3 C -0.03 -0.33 5.75 -29.51 -0.17 -0.50 16 4 C 0.07 1.08 4.75 -3.82 -0.02 1.06 16 5 N -0.53 -9.79 4.36 -236.07 -1.03 -10.82 16 6 C 0.19 4.61 4.55 -4.97 -0.02 4.59 16 7 C -0.51 -13.38 8.23 -34.44 -0.28 -13.66 16 8 H 0.06 1.67 7.31 -52.49 -0.38 1.29 16 9 C 0.06 1.56 5.46 -17.82 -0.10 1.46 16 10 N -0.90 -25.75 13.29 55.43 0.74 -25.01 16 11 Si 0.89 21.08 29.54 -169.99 -5.02 16.06 16 12 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 13 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 14 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 15 C 0.05 0.77 4.09 -3.83 -0.02 0.76 16 16 C -0.10 -1.42 4.31 -26.73 -0.12 -1.53 16 17 C -0.05 -0.56 0.54 -154.51 -0.08 -0.65 16 18 C -0.10 -1.21 4.12 -26.73 -0.11 -1.32 16 19 C -0.09 -0.86 3.19 -90.62 -0.29 -1.15 16 20 C -0.11 -0.98 5.19 -26.73 -0.14 -1.12 16 21 C -0.09 -0.79 3.19 -90.64 -0.29 -1.08 16 22 C -0.11 -0.93 5.19 -26.73 -0.14 -1.07 16 23 C -0.09 -0.81 3.19 -90.62 -0.29 -1.10 16 24 C -0.11 -1.01 5.19 -26.73 -0.14 -1.15 16 25 C -0.10 -1.09 4.47 -26.73 -0.12 -1.21 16 26 C -0.10 -1.03 4.12 -26.76 -0.11 -1.15 16 27 H 0.10 1.00 6.89 -51.93 -0.36 0.64 16 28 H 0.12 1.38 8.14 -51.93 -0.42 0.96 16 29 H 0.09 1.81 6.57 -51.93 -0.34 1.47 16 30 H 0.03 0.46 8.00 -51.93 -0.42 0.04 16 31 H 0.04 0.91 6.71 -51.92 -0.35 0.57 16 32 H -0.01 -0.25 8.12 -51.93 -0.42 -0.68 16 33 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 34 H 0.03 0.45 6.56 -51.93 -0.34 0.11 16 35 H 0.06 0.77 4.60 -51.93 -0.24 0.53 16 36 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16 37 H 0.07 1.10 6.94 -51.93 -0.36 0.74 16 38 H 0.06 0.79 6.54 -51.93 -0.34 0.45 16 39 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 40 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 41 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 42 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 43 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 44 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 45 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 46 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 47 H 0.06 0.59 8.14 -51.92 -0.42 0.17 16 48 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 49 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 50 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 51 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 52 H 0.06 0.66 6.32 -51.93 -0.33 0.33 16 LS Contribution 383.04 15.07 5.77 5.77 Total: -1.00 -28.73 383.04 -10.86 -39.60 By element: Atomic # 1 Polarization: 6.75 SS G_CDS: -9.35 Total: -2.60 kcal Atomic # 6 Polarization: -13.17 SS G_CDS: -2.75 Total: -15.92 kcal Atomic # 7 Polarization: -43.40 SS G_CDS: 0.49 Total: -42.91 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.06 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -28.73 -10.86 -39.60 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001209447163.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.619 kcal (2) G-P(sol) polarization free energy of solvation -28.733 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.114 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.864 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.597 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.978 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds