Wall clock time and date at job start Tue Mar 31 2020 12:09:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13596 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 C 1.53009 * 109.47017 * 131.05017 * 3 2 1 5 5 N 1.46895 * 109.46914 * 174.87118 * 4 3 2 6 6 C 1.46902 * 110.99396 * 199.75449 * 5 4 3 7 7 C 1.50700 * 109.47619 * 66.04662 * 6 5 4 8 8 H 1.07994 * 119.99539 * 359.97438 * 7 6 5 9 9 C 1.37872 * 119.99853 * 180.02562 * 7 6 5 10 10 N 1.31513 * 120.00761 * 359.97438 * 9 7 6 11 11 Si 1.86809 * 119.99578 * 179.97438 * 9 7 6 12 12 H 1.48495 * 109.47156 * 359.97438 * 11 9 7 13 13 H 1.48504 * 109.47106 * 119.99993 * 11 9 7 14 14 H 1.48504 * 109.46923 * 239.99678 * 11 9 7 15 15 C 1.46897 * 111.00527 * 75.80048 * 5 4 3 16 16 C 1.52993 * 109.47342 * 199.64313 * 15 5 4 17 17 C 1.53000 * 109.47353 * 175.11605 * 16 15 5 18 18 C 1.53003 * 109.47381 * 59.99690 * 17 16 15 19 19 C 1.53000 * 109.47052 * 180.02562 * 18 17 16 20 20 C 1.53004 * 109.46982 * 60.00320 * 19 18 17 21 21 C 1.53003 * 109.46966 * 299.99732 * 20 19 18 22 22 C 1.53006 * 109.47017 * 299.99852 * 21 20 19 23 23 C 1.53002 * 109.46642 * 60.00453 * 22 21 20 24 24 C 1.52993 * 109.47364 * 300.00115 * 19 18 17 25 25 C 1.53000 * 109.47589 * 59.99901 * 23 22 21 26 26 C 1.52999 * 109.46722 * 299.99666 * 17 16 15 27 27 H 1.08994 * 109.47833 * 11.04622 * 3 2 1 28 28 H 1.09006 * 109.47355 * 251.04299 * 3 2 1 29 29 H 1.08992 * 109.47016 * 54.86674 * 4 3 2 30 30 H 1.08998 * 109.46743 * 294.86804 * 4 3 2 31 31 H 1.09013 * 109.46987 * 186.04711 * 6 5 4 32 32 H 1.09002 * 109.47307 * 306.03599 * 6 5 4 33 33 H 0.97000 * 120.00440 * 179.97438 * 10 9 7 34 34 H 1.08998 * 109.47491 * 79.63720 * 15 5 4 35 35 H 1.09005 * 109.46981 * 319.63975 * 15 5 4 36 36 H 1.08999 * 109.47582 * 55.11499 * 16 15 5 37 37 H 1.08999 * 109.47451 * 295.11504 * 16 15 5 38 38 H 1.08996 * 109.46518 * 300.00442 * 18 17 16 39 39 H 1.09002 * 109.46421 * 60.00109 * 18 17 16 40 40 H 1.08999 * 109.46534 * 179.97438 * 19 18 17 41 41 H 1.08996 * 109.46778 * 179.97438 * 20 19 18 42 42 H 1.08996 * 109.47102 * 59.99450 * 20 19 18 43 43 H 1.08997 * 109.46767 * 180.02562 * 21 20 19 44 44 H 1.08996 * 109.47476 * 300.00448 * 22 21 20 45 45 H 1.08998 * 109.46779 * 180.02562 * 22 21 20 46 46 H 1.09005 * 109.46716 * 179.97438 * 23 22 21 47 47 H 1.09010 * 109.47034 * 300.00451 * 24 19 18 48 48 H 1.08996 * 109.47256 * 180.02562 * 24 19 18 49 49 H 1.08994 * 109.47358 * 179.97438 * 25 23 22 50 50 H 1.08995 * 109.46787 * 59.99489 * 25 23 22 51 51 H 1.08995 * 109.47641 * 299.99848 * 26 17 16 52 52 H 1.09002 * 109.47155 * 60.00417 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1175 0.9483 -1.0879 5 7 4.5812 1.0435 -1.0080 6 6 5.0677 2.2531 -1.6848 7 6 4.5879 3.4726 -0.9407 8 1 3.9818 3.3603 -0.0539 9 6 4.9218 4.7316 -1.3926 10 7 5.6595 4.8685 -2.4728 11 14 4.3265 6.2433 -0.4705 12 1 3.5191 5.8216 0.7022 13 1 5.4957 7.0339 -0.0088 14 1 3.4909 7.0761 -1.3726 15 6 5.2181 -0.1602 -1.5589 16 6 6.6524 -0.2627 -1.0367 17 6 7.2754 -1.5770 -1.5115 18 6 7.2856 -1.6134 -3.0410 19 6 7.9080 -2.9280 -3.5157 20 6 7.0856 -4.1032 -2.9832 21 6 7.0753 -4.0668 -1.4536 22 6 8.5098 -4.1700 -0.9314 23 6 9.3321 -2.9948 -1.4640 24 6 9.3423 -3.0312 -2.9935 25 6 8.7098 -1.6801 -0.9892 26 6 6.4535 -2.7525 -0.9789 27 1 2.9718 -1.0077 -0.1969 28 1 2.9712 0.3347 0.9720 29 1 2.6806 1.9362 -0.9430 30 1 2.8313 0.5645 -2.0671 31 1 6.1576 2.2450 -1.7046 32 1 4.6861 2.2768 -2.7056 33 1 5.8941 5.7543 -2.7909 34 1 5.2310 -0.0988 -2.6470 35 1 4.6556 -1.0419 -1.2514 36 1 6.6452 -0.2369 0.0530 37 1 7.2380 0.5747 -1.4160 38 1 6.2637 -1.5404 -3.4129 39 1 7.8711 -0.7759 -3.4204 40 1 7.9148 -2.9541 -4.6054 41 1 7.5287 -5.0397 -3.3217 42 1 6.0637 -4.0297 -3.3552 43 1 6.4898 -4.9043 -1.0743 44 1 8.9532 -5.1065 -1.2696 45 1 8.5024 -4.1446 0.1583 46 1 10.3539 -3.0680 -1.0916 47 1 9.9282 -2.1938 -3.3729 48 1 9.7858 -3.9675 -3.3321 49 1 9.2959 -0.8430 -1.3683 50 1 8.7025 -1.6543 0.1004 51 1 6.4462 -2.7267 0.1108 52 1 5.4316 -2.6795 -1.3509 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001209447163.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:09:06 Heat of formation + Delta-G solvation = -27.566670 kcal Electronic energy + Delta-G solvation = -27824.205010 eV Core-core repulsion = 24399.641666 eV Total energy + Delta-G solvation = -3424.563344 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.34627 -39.02234 -37.47672 -35.44118 -34.59745 -33.41775 -33.37932 -32.22746 -29.92090 -27.83848 -26.73736 -26.71515 -24.82723 -24.38281 -22.34860 -22.22674 -21.42618 -20.38846 -18.62642 -18.31146 -18.25794 -16.67568 -16.28617 -16.11322 -15.56429 -15.42589 -15.28812 -15.22511 -15.02859 -14.98616 -14.67028 -14.15038 -14.14177 -14.09810 -13.83955 -13.62960 -13.48438 -13.25784 -13.18271 -13.11753 -12.78938 -12.73171 -12.55501 -12.40662 -12.21778 -12.07676 -11.86244 -11.66301 -11.64551 -11.60487 -11.53965 -11.39677 -11.20346 -11.00654 -10.56627 -10.41150 -10.36111 -10.32780 -8.93576 -8.16019 -6.23938 1.41551 1.43606 1.55260 1.77934 1.85885 2.42755 2.98018 3.18147 3.55907 3.69659 3.70620 3.79024 4.12849 4.19943 4.21526 4.35433 4.40181 4.42434 4.44610 4.49770 4.56322 4.57578 4.59836 4.61310 4.68142 4.78027 4.84072 4.90329 4.93072 4.98204 5.02713 5.06002 5.11368 5.22230 5.24379 5.25753 5.27157 5.30413 5.32823 5.33317 5.36793 5.38305 5.41236 5.48441 5.50237 5.68738 5.69873 5.73206 5.80044 5.81921 6.14157 6.40105 6.62703 6.74255 6.94206 7.45649 8.95021 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.012158 B = 0.003808 C = 0.003118 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2302.523497 B = 7350.553443 C = 8978.946553 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.501 5.501 2 C 0.242 3.758 3 C -0.009 4.009 4 C 0.064 3.936 5 N -0.532 5.532 6 C 0.212 3.788 7 C -0.516 4.516 8 H 0.068 0.932 9 C 0.003 3.997 10 N -0.935 5.935 11 Si 0.958 3.042 12 H -0.261 1.261 13 H -0.280 1.280 14 H -0.285 1.285 15 C 0.055 3.945 16 C -0.093 4.093 17 C -0.043 4.043 18 C -0.104 4.104 19 C -0.086 4.086 20 C -0.105 4.105 21 C -0.085 4.085 22 C -0.104 4.104 23 C -0.084 4.084 24 C -0.107 4.107 25 C -0.102 4.102 26 C -0.101 4.101 27 H 0.137 0.863 28 H 0.132 0.868 29 H 0.063 0.937 30 H 0.030 0.970 31 H 0.010 0.990 32 H -0.044 1.044 33 H 0.261 0.739 34 H 0.013 0.987 35 H 0.098 0.902 36 H 0.069 0.931 37 H 0.028 0.972 38 H 0.056 0.944 39 H 0.037 0.963 40 H 0.064 0.936 41 H 0.069 0.931 42 H 0.060 0.940 43 H 0.080 0.920 44 H 0.068 0.932 45 H 0.065 0.935 46 H 0.071 0.929 47 H 0.049 0.951 48 H 0.070 0.930 49 H 0.043 0.957 50 H 0.064 0.936 51 H 0.069 0.931 52 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.232 -21.461 2.305 22.764 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.179 5.179 2 C -0.075 4.075 3 C -0.049 4.049 4 C -0.066 4.066 5 N -0.256 5.256 6 C 0.085 3.915 7 C -0.554 4.554 8 H 0.086 0.914 9 C -0.195 4.195 10 N -0.576 5.576 11 Si 0.783 3.217 12 H -0.185 1.185 13 H -0.206 1.206 14 H -0.211 1.211 15 C -0.073 4.073 16 C -0.131 4.131 17 C -0.044 4.044 18 C -0.142 4.142 19 C -0.104 4.104 20 C -0.142 4.142 21 C -0.103 4.103 22 C -0.141 4.141 23 C -0.102 4.102 24 C -0.145 4.145 25 C -0.139 4.139 26 C -0.138 4.138 27 H 0.155 0.845 28 H 0.149 0.851 29 H 0.081 0.919 30 H 0.049 0.951 31 H 0.028 0.972 32 H -0.026 1.026 33 H 0.070 0.930 34 H 0.031 0.969 35 H 0.116 0.884 36 H 0.088 0.912 37 H 0.047 0.953 38 H 0.075 0.925 39 H 0.056 0.944 40 H 0.083 0.917 41 H 0.087 0.913 42 H 0.078 0.922 43 H 0.098 0.902 44 H 0.087 0.913 45 H 0.084 0.916 46 H 0.090 0.910 47 H 0.068 0.932 48 H 0.089 0.911 49 H 0.062 0.938 50 H 0.083 0.917 51 H 0.088 0.912 52 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 5.736 -21.298 2.698 22.221 hybrid contribution 0.160 1.703 -1.074 2.020 sum 5.896 -19.595 1.624 20.527 Atomic orbital electron populations 1.81190 1.14708 1.11102 1.10931 1.29630 0.95578 0.91080 0.91179 1.19388 0.78846 1.03572 1.03142 1.21824 0.89137 0.99516 0.96117 1.61957 1.04317 1.02585 1.56706 1.19339 0.94431 0.87366 0.90334 1.21574 1.31657 0.90963 1.11218 0.91369 1.25803 0.95516 1.02255 0.95887 1.70086 1.39116 1.23779 1.24653 0.85502 0.78090 0.79252 0.78812 1.18538 1.20634 1.21123 1.22317 0.96014 0.93010 0.95912 1.21483 0.94641 0.96001 1.00994 1.20360 0.95241 0.94235 0.94519 1.21599 1.00179 0.96901 0.95512 1.21052 0.95385 0.94800 0.99176 1.21524 0.99660 0.97499 0.95535 1.21067 0.96486 0.97550 0.95194 1.21521 0.94822 0.97487 1.00280 1.21046 0.99071 0.94827 0.95287 1.21534 0.95960 1.01480 0.95491 1.21542 0.94954 0.97095 1.00350 1.21611 0.98544 0.92994 1.00648 0.84548 0.85063 0.91856 0.95149 0.97192 1.02591 0.92983 0.96854 0.88355 0.91196 0.95324 0.92526 0.94393 0.91740 0.91276 0.92171 0.90151 0.91336 0.91615 0.91014 0.93198 0.91097 0.93833 0.91690 0.91206 0.91454 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.50 -16.54 18.54 20.00 0.37 -16.16 16 2 C 0.24 6.59 15.43 89.44 1.38 7.97 16 3 C -0.01 -0.21 5.75 28.79 0.17 -0.04 16 4 C 0.06 2.07 4.75 86.31 0.41 2.48 16 5 N -0.53 -19.53 4.36 -900.80 -3.92 -23.46 16 6 C 0.21 10.51 4.55 85.56 0.39 10.90 16 7 C -0.52 -27.72 8.23 25.60 0.21 -27.51 16 8 H 0.07 3.55 7.31 -2.91 -0.02 3.52 16 9 C 0.00 0.18 5.46 84.65 0.46 0.64 16 10 N -0.94 -55.54 13.29 21.45 0.28 -55.26 16 11 Si 0.96 43.74 29.54 68.60 2.03 45.77 16 12 H -0.26 -11.40 7.11 99.48 0.71 -10.69 16 13 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 14 H -0.29 -12.92 7.11 99.48 0.71 -12.22 16 15 C 0.05 1.62 4.09 86.30 0.35 1.97 16 16 C -0.09 -2.67 4.31 30.59 0.13 -2.54 16 17 C -0.04 -0.95 0.54 -52.18 -0.03 -0.98 16 18 C -0.10 -2.46 4.12 30.60 0.13 -2.34 16 19 C -0.09 -1.61 3.19 -10.79 -0.03 -1.65 16 20 C -0.10 -1.63 5.19 30.60 0.16 -1.47 16 21 C -0.08 -1.25 3.19 -10.81 -0.03 -1.28 16 22 C -0.10 -1.48 5.19 30.60 0.16 -1.32 16 23 C -0.08 -1.43 3.19 -10.79 -0.03 -1.47 16 24 C -0.11 -1.89 5.19 30.59 0.16 -1.73 16 25 C -0.10 -2.16 4.47 30.60 0.14 -2.02 16 26 C -0.10 -1.75 4.12 30.58 0.13 -1.63 16 27 H 0.14 2.09 6.89 -2.39 -0.02 2.07 16 28 H 0.13 2.66 8.14 -2.38 -0.02 2.64 16 29 H 0.06 2.45 6.57 -2.39 -0.02 2.43 16 30 H 0.03 0.97 8.00 -2.39 -0.02 0.95 16 31 H 0.01 0.55 6.71 -2.38 -0.02 0.53 16 32 H -0.04 -2.42 8.12 -2.39 -0.02 -2.44 16 33 H 0.26 14.70 8.31 -92.71 -0.77 13.93 16 34 H 0.01 0.44 6.56 -2.39 -0.02 0.42 16 35 H 0.10 2.18 4.60 -2.38 -0.01 2.17 16 36 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 37 H 0.03 1.02 6.94 -2.39 -0.02 1.00 16 38 H 0.06 1.40 6.54 -2.39 -0.02 1.38 16 39 H 0.04 1.05 8.14 -2.39 -0.02 1.03 16 40 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 41 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 42 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 43 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 44 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 45 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 46 H 0.07 1.14 8.14 -2.38 -0.02 1.12 16 47 H 0.05 0.97 8.14 -2.38 -0.02 0.95 16 48 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 49 H 0.04 1.06 8.14 -2.39 -0.02 1.04 16 50 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 51 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 52 H 0.07 1.14 6.32 -2.39 -0.02 1.12 16 Total: -1.00 -64.76 383.04 3.87 -60.89 By element: Atomic # 1 Polarization: 9.36 SS G_CDS: 0.88 Total: 10.24 kcal Atomic # 6 Polarization: -26.26 SS G_CDS: 4.24 Total: -22.02 kcal Atomic # 7 Polarization: -91.61 SS G_CDS: -3.27 Total: -94.88 kcal Atomic # 14 Polarization: 43.74 SS G_CDS: 2.03 Total: 45.77 kcal Total: -64.76 3.87 -60.89 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001209447163.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.325 kcal (2) G-P(sol) polarization free energy of solvation -64.762 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.437 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.870 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.892 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.567 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds