Wall clock time and date at job start Tue Mar 31 2020 12:09:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86803 * 119.99581 * 2 1 4 4 H 1.48498 * 109.47013 * 269.99273 * 3 2 1 5 5 H 1.48500 * 109.47093 * 29.99640 * 3 2 1 6 6 H 1.48498 * 109.46644 * 149.99710 * 3 2 1 7 7 C 1.37878 * 120.00298 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99988 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99714 * 359.97438 * 7 2 1 10 10 N 1.46899 * 109.46764 * 185.20361 * 9 7 2 11 11 C 1.46901 * 110.99896 * 62.56614 * 10 9 7 12 12 C 1.52996 * 109.47183 * 66.04281 * 11 10 9 13 13 C 1.52999 * 109.47379 * 179.97438 * 12 11 10 14 14 N 1.46892 * 109.47562 * 180.02562 * 13 12 11 15 15 C 1.46842 * 111.00361 * 170.00077 * 14 13 12 16 16 C 1.53040 * 109.52772 * 185.84046 * 15 14 13 17 17 C 1.53122 * 109.27499 * 300.82071 * 16 15 14 18 18 C 1.53125 * 109.16056 * 57.65671 * 17 16 15 19 19 C 1.46849 * 111.00021 * 294.21223 * 14 13 12 20 20 C 1.46898 * 111.00354 * 298.60912 * 10 9 7 21 21 C 1.50700 * 109.47318 * 287.52408 * 20 10 9 22 22 C 1.38237 * 120.00169 * 275.42945 * 21 20 10 23 23 C 1.38232 * 119.99994 * 179.76412 * 22 21 20 24 24 C 1.38234 * 119.99790 * 0.50979 * 23 22 21 25 25 C 1.38232 * 120.00245 * 359.74294 * 24 23 22 26 26 C 1.38234 * 119.99755 * 95.70337 * 21 20 10 27 27 H 0.97000 * 120.00582 * 0.02562 * 1 2 3 28 28 H 1.09006 * 109.46867 * 65.20831 * 9 7 2 29 29 H 1.08992 * 109.47659 * 305.21056 * 9 7 2 30 30 H 1.08999 * 109.47088 * 306.04607 * 11 10 9 31 31 H 1.09001 * 109.47209 * 186.04231 * 11 10 9 32 32 H 1.09005 * 109.47267 * 60.00153 * 12 11 10 33 33 H 1.09003 * 109.47502 * 300.00221 * 12 11 10 34 34 H 1.09005 * 109.46640 * 59.99960 * 13 12 11 35 35 H 1.09003 * 109.47140 * 300.00633 * 13 12 11 36 36 H 1.09000 * 109.46070 * 65.82702 * 15 14 13 37 37 H 1.09001 * 109.46519 * 305.85804 * 15 14 13 38 38 H 1.09000 * 109.50318 * 180.88165 * 16 15 14 39 39 H 1.08995 * 109.49997 * 60.75829 * 16 15 14 40 40 H 1.08999 * 109.52211 * 177.55519 * 17 16 15 41 41 H 1.08994 * 109.52362 * 297.74876 * 17 16 15 42 42 H 1.09000 * 109.50372 * 62.28105 * 18 17 16 43 43 H 1.08997 * 109.50161 * 182.40603 * 18 17 16 44 44 H 1.08990 * 109.46309 * 294.17509 * 19 14 13 45 45 H 1.09001 * 109.46471 * 54.14276 * 19 14 13 46 46 H 1.09007 * 109.47020 * 47.52264 * 20 10 9 47 47 H 1.08996 * 109.47325 * 167.52401 * 20 10 9 48 48 H 1.07999 * 119.99537 * 359.97438 * 22 21 20 49 49 H 1.08000 * 119.99683 * 180.23433 * 23 22 21 50 50 H 1.08008 * 119.99690 * 179.72555 * 24 23 22 51 51 H 1.08010 * 120.00135 * 179.97438 * 25 24 23 52 52 H 1.07998 * 120.00377 * 0.02562 * 26 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4464 2.6527 0.7000 6 1 3.5465 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0017 10 7 2.2009 -3.6127 0.1277 11 6 2.9256 -3.5446 1.4037 12 6 1.9472 -3.7682 2.5585 13 6 2.7020 -3.6980 3.8874 14 7 1.7628 -3.9133 4.9961 15 6 2.4789 -4.0890 6.2660 16 6 1.4827 -4.4543 7.3688 17 6 0.4411 -3.3395 7.4987 18 6 -0.2566 -3.1439 6.1497 19 6 0.7901 -2.8165 5.0824 20 6 3.1337 -3.6400 -1.0068 21 6 2.4088 -4.1087 -2.2420 22 6 2.2651 -5.4615 -2.4877 23 6 1.5960 -5.8913 -3.6183 24 6 1.0797 -4.9685 -4.5086 25 6 1.2279 -3.6158 -4.2657 26 6 1.8925 -3.1859 -3.1324 27 1 -0.4851 0.8400 -0.0004 28 1 0.6959 -2.5989 -0.9310 29 1 0.5566 -2.5171 0.8415 30 1 3.3901 -2.5639 1.5058 31 1 3.6958 -4.3156 1.4257 32 1 1.4826 -4.7490 2.4564 33 1 1.1769 -2.9973 2.5366 34 1 3.1669 -2.7174 3.9897 35 1 3.4721 -4.4692 3.9091 36 1 2.9865 -3.1606 6.5281 37 1 3.2136 -4.8873 6.1612 38 1 2.0125 -4.5693 8.3144 39 1 0.9846 -5.3897 7.1139 40 1 -0.2956 -3.6154 8.2531 41 1 0.9342 -2.4126 7.7915 42 1 -0.7820 -4.0587 5.8757 43 1 -0.9693 -2.3226 6.2244 44 1 1.3056 -1.8942 5.3500 45 1 0.2982 -2.6906 4.1179 46 1 3.5296 -2.6385 -1.1758 47 1 3.9543 -4.3226 -0.7861 48 1 2.6727 -6.1824 -1.7945 49 1 1.4805 -6.9482 -3.8083 50 1 0.5607 -5.3044 -5.3943 51 1 0.8248 -2.8948 -4.9616 52 1 2.0090 -2.1290 -2.9430 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001209447782.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:09:43 Heat of formation + Delta-G solvation = 14.750602 kcal Electronic energy + Delta-G solvation = -26892.145966 eV Core-core repulsion = 23469.417637 eV Total energy + Delta-G solvation = -3422.728329 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -38.99841 -38.77081 -36.77795 -34.15694 -32.52918 -31.59116 -30.75371 -30.35977 -29.65692 -27.01563 -25.66869 -24.15501 -23.30275 -22.82371 -21.98118 -21.44498 -20.18445 -19.61883 -19.40600 -16.58780 -16.03995 -15.96966 -15.24891 -14.94976 -14.76883 -14.58699 -14.44108 -14.41244 -14.04450 -13.83676 -13.42374 -13.12287 -13.02258 -12.85687 -12.73685 -12.28141 -12.13072 -11.96183 -11.60553 -11.30280 -11.17217 -11.11761 -11.02961 -10.91202 -10.74671 -10.63205 -10.55305 -10.36818 -10.33751 -10.26683 -9.96364 -9.94112 -9.84747 -9.47860 -8.45533 -8.33953 -8.18241 -8.10404 -7.13631 -6.03093 -4.11807 1.89599 1.95076 3.23655 3.31600 3.33397 4.04310 4.30837 4.38008 4.83374 4.89492 4.95861 5.13991 5.26704 5.29428 5.37214 5.39422 5.43787 5.52274 5.53537 5.57923 5.66926 5.68369 5.73158 5.81968 5.88230 5.94034 5.95877 6.01169 6.05474 6.07735 6.09232 6.15818 6.19267 6.24035 6.34514 6.40577 6.44055 6.50865 6.59041 6.68564 6.90182 6.93812 6.97542 7.04282 7.28370 7.30433 7.34021 7.36931 7.55825 7.57343 7.92290 8.08506 8.29718 8.32461 8.98873 9.54049 11.01275 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.010518 B = 0.003722 C = 0.003005 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2661.547234 B = 7520.429291 C = 9315.397093 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.068 3.932 3 Si 0.881 3.119 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.276 1.276 7 C -0.545 4.545 8 H 0.055 0.945 9 C 0.184 3.816 10 N -0.535 5.535 11 C 0.066 3.934 12 C -0.106 4.106 13 C 0.060 3.940 14 N -0.537 5.537 15 C 0.055 3.945 16 C -0.115 4.115 17 C -0.121 4.121 18 C -0.116 4.116 19 C 0.051 3.949 20 C 0.092 3.908 21 C -0.055 4.055 22 C -0.106 4.106 23 C -0.132 4.132 24 C -0.133 4.133 25 C -0.127 4.127 26 C -0.096 4.096 27 H 0.261 0.739 28 H 0.031 0.969 29 H 0.036 0.964 30 H 0.041 0.959 31 H 0.047 0.953 32 H 0.066 0.934 33 H 0.074 0.926 34 H 0.031 0.969 35 H 0.067 0.933 36 H 0.028 0.972 37 H 0.070 0.930 38 H 0.061 0.939 39 H 0.070 0.930 40 H 0.060 0.940 41 H 0.056 0.944 42 H 0.070 0.930 43 H 0.064 0.936 44 H 0.030 0.970 45 H 0.086 0.914 46 H 0.055 0.945 47 H 0.058 0.942 48 H 0.116 0.884 49 H 0.112 0.888 50 H 0.111 0.889 51 H 0.114 0.886 52 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.653 -9.132 5.908 11.473 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.135 4.135 3 Si 0.709 3.291 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.201 1.201 7 C -0.584 4.584 8 H 0.073 0.927 9 C 0.059 3.941 10 N -0.259 5.259 11 C -0.063 4.063 12 C -0.144 4.144 13 C -0.068 4.068 14 N -0.261 5.261 15 C -0.073 4.073 16 C -0.153 4.153 17 C -0.159 4.159 18 C -0.154 4.154 19 C -0.077 4.077 20 C -0.035 4.035 21 C -0.056 4.056 22 C -0.125 4.125 23 C -0.150 4.150 24 C -0.151 4.151 25 C -0.145 4.145 26 C -0.115 4.115 27 H 0.071 0.929 28 H 0.049 0.951 29 H 0.054 0.946 30 H 0.059 0.941 31 H 0.066 0.934 32 H 0.085 0.915 33 H 0.092 0.908 34 H 0.049 0.951 35 H 0.085 0.915 36 H 0.046 0.954 37 H 0.089 0.911 38 H 0.080 0.920 39 H 0.088 0.912 40 H 0.078 0.922 41 H 0.075 0.925 42 H 0.089 0.911 43 H 0.083 0.917 44 H 0.048 0.952 45 H 0.104 0.896 46 H 0.073 0.927 47 H 0.076 0.924 48 H 0.134 0.866 49 H 0.130 0.870 50 H 0.129 0.871 51 H 0.132 0.868 52 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 2.970 -9.877 5.830 11.848 hybrid contribution 1.264 2.663 0.163 2.952 sum 4.234 -7.215 5.993 10.291 Atomic orbital electron populations 1.69940 1.05885 1.26660 1.50096 1.24903 0.94660 0.98787 0.95111 0.86769 0.79971 0.84158 0.78175 1.20639 1.21206 1.20096 1.21685 0.93099 0.92108 1.51519 0.92709 1.19808 0.91157 0.85138 0.98013 1.62519 1.16724 1.46986 0.99643 1.21824 0.95190 0.99348 0.89922 1.21503 0.98800 1.02889 0.91232 1.22071 0.94267 0.99392 0.91075 1.61917 1.16976 1.43822 1.03418 1.22056 0.95674 0.99758 0.89819 1.21572 0.97056 0.99280 0.97407 1.21585 0.98167 0.98610 0.97522 1.21585 0.97591 1.02056 0.94196 1.22157 0.93876 0.91371 1.00262 1.20935 0.93465 0.99902 0.89243 1.19869 0.97553 0.92913 0.95271 1.20960 0.99384 0.95394 0.96736 1.20996 0.99781 0.98826 0.95446 1.20992 1.01126 0.93475 0.99531 1.21095 0.99920 0.95533 0.97942 1.21283 0.96422 1.00396 0.93352 0.92884 0.95091 0.94603 0.94076 0.93409 0.91500 0.90781 0.95110 0.91465 0.95397 0.91117 0.92041 0.91168 0.92159 0.92542 0.91144 0.91716 0.95212 0.89552 0.92663 0.92375 0.86642 0.86965 0.87061 0.86767 0.85405 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.34 13.29 55.43 0.74 -24.61 16 2 C 0.07 1.85 5.46 -17.82 -0.10 1.75 16 3 Si 0.88 20.93 29.54 -169.99 -5.02 15.90 16 4 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 5 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 6 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 7 C -0.54 -14.21 7.33 -34.44 -0.25 -14.47 16 8 H 0.05 1.43 5.96 -52.49 -0.31 1.12 16 9 C 0.18 4.56 4.72 -4.98 -0.02 4.53 16 10 N -0.54 -11.10 4.65 -237.52 -1.11 -12.20 16 11 C 0.07 1.23 4.77 -3.83 -0.02 1.22 16 12 C -0.11 -1.88 5.07 -26.73 -0.14 -2.01 16 13 C 0.06 0.91 4.96 -3.83 -0.02 0.89 16 14 N -0.54 -7.72 4.66 -234.68 -1.09 -8.82 16 15 C 0.06 0.66 5.46 -3.83 -0.02 0.64 16 16 C -0.12 -1.21 6.09 -26.65 -0.16 -1.37 16 17 C -0.12 -1.29 6.00 -26.60 -0.16 -1.45 16 18 C -0.12 -1.44 6.09 -26.65 -0.16 -1.60 16 19 C 0.05 0.75 5.29 -3.83 -0.02 0.73 16 20 C 0.09 1.76 4.95 -4.98 -0.02 1.74 16 21 C -0.06 -1.03 4.92 -104.62 -0.51 -1.54 16 22 C -0.11 -1.74 9.72 -39.58 -0.38 -2.13 16 23 C -0.13 -1.98 10.05 -39.59 -0.40 -2.37 16 24 C -0.13 -1.99 10.05 -39.59 -0.40 -2.39 16 25 C -0.13 -2.11 10.05 -39.58 -0.40 -2.50 16 26 C -0.10 -1.82 8.50 -39.58 -0.34 -2.15 16 27 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 28 H 0.03 0.84 6.59 -51.93 -0.34 0.50 16 29 H 0.04 0.97 6.36 -51.93 -0.33 0.64 16 30 H 0.04 0.85 6.57 -51.93 -0.34 0.51 16 31 H 0.05 0.79 7.86 -51.93 -0.41 0.38 16 32 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 33 H 0.07 1.52 4.79 -51.93 -0.25 1.27 16 34 H 0.03 0.49 8.12 -51.93 -0.42 0.07 16 35 H 0.07 0.92 7.99 -51.93 -0.41 0.51 16 36 H 0.03 0.34 8.14 -51.93 -0.42 -0.08 16 37 H 0.07 0.79 8.01 -51.93 -0.42 0.37 16 38 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 39 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 40 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 41 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 42 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 43 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 44 H 0.03 0.45 8.14 -51.93 -0.42 0.03 16 45 H 0.09 1.45 6.21 -51.93 -0.32 1.13 16 46 H 0.06 1.15 6.07 -51.93 -0.32 0.84 16 47 H 0.06 0.98 7.78 -51.93 -0.40 0.58 16 48 H 0.12 1.72 8.06 -52.49 -0.42 1.30 16 49 H 0.11 1.37 8.06 -52.49 -0.42 0.94 16 50 H 0.11 1.36 8.06 -52.48 -0.42 0.94 16 51 H 0.11 1.68 8.06 -52.48 -0.42 1.26 16 52 H 0.13 2.62 8.06 -52.49 -0.42 2.20 16 LS Contribution 397.11 15.07 5.98 5.98 Total: -1.00 -27.94 397.11 -13.36 -41.30 By element: Atomic # 1 Polarization: 14.26 SS G_CDS: -9.33 Total: 4.93 kcal Atomic # 6 Polarization: -18.96 SS G_CDS: -3.53 Total: -22.49 kcal Atomic # 7 Polarization: -44.16 SS G_CDS: -1.46 Total: -45.63 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.02 Total: 15.90 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -27.94 -13.36 -41.30 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001209447782.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.046 kcal (2) G-P(sol) polarization free energy of solvation -27.940 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.106 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -13.355 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.295 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.751 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds