Wall clock time and date at job start Tue Mar 31 2020 12:09:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86803 * 119.99581 * 2 1 4 4 H 1.48498 * 109.47013 * 269.99273 * 3 2 1 5 5 H 1.48500 * 109.47093 * 29.99640 * 3 2 1 6 6 H 1.48498 * 109.46644 * 149.99710 * 3 2 1 7 7 C 1.37878 * 120.00298 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99988 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99714 * 359.97438 * 7 2 1 10 10 N 1.46899 * 109.46764 * 185.20361 * 9 7 2 11 11 C 1.46901 * 110.99896 * 62.56614 * 10 9 7 12 12 C 1.52996 * 109.47183 * 66.04281 * 11 10 9 13 13 C 1.52999 * 109.47379 * 179.97438 * 12 11 10 14 14 N 1.46892 * 109.47562 * 180.02562 * 13 12 11 15 15 C 1.46842 * 111.00361 * 170.00077 * 14 13 12 16 16 C 1.53040 * 109.52772 * 185.84046 * 15 14 13 17 17 C 1.53122 * 109.27499 * 300.82071 * 16 15 14 18 18 C 1.53125 * 109.16056 * 57.65671 * 17 16 15 19 19 C 1.46849 * 111.00021 * 294.21223 * 14 13 12 20 20 C 1.46898 * 111.00354 * 298.60912 * 10 9 7 21 21 C 1.50700 * 109.47318 * 287.52408 * 20 10 9 22 22 C 1.38237 * 120.00169 * 275.42945 * 21 20 10 23 23 C 1.38232 * 119.99994 * 179.76412 * 22 21 20 24 24 C 1.38234 * 119.99790 * 0.50979 * 23 22 21 25 25 C 1.38232 * 120.00245 * 359.74294 * 24 23 22 26 26 C 1.38234 * 119.99755 * 95.70337 * 21 20 10 27 27 H 0.97000 * 120.00582 * 0.02562 * 1 2 3 28 28 H 1.09006 * 109.46867 * 65.20831 * 9 7 2 29 29 H 1.08992 * 109.47659 * 305.21056 * 9 7 2 30 30 H 1.08999 * 109.47088 * 306.04607 * 11 10 9 31 31 H 1.09001 * 109.47209 * 186.04231 * 11 10 9 32 32 H 1.09005 * 109.47267 * 60.00153 * 12 11 10 33 33 H 1.09003 * 109.47502 * 300.00221 * 12 11 10 34 34 H 1.09005 * 109.46640 * 59.99960 * 13 12 11 35 35 H 1.09003 * 109.47140 * 300.00633 * 13 12 11 36 36 H 1.09000 * 109.46070 * 65.82702 * 15 14 13 37 37 H 1.09001 * 109.46519 * 305.85804 * 15 14 13 38 38 H 1.09000 * 109.50318 * 180.88165 * 16 15 14 39 39 H 1.08995 * 109.49997 * 60.75829 * 16 15 14 40 40 H 1.08999 * 109.52211 * 177.55519 * 17 16 15 41 41 H 1.08994 * 109.52362 * 297.74876 * 17 16 15 42 42 H 1.09000 * 109.50372 * 62.28105 * 18 17 16 43 43 H 1.08997 * 109.50161 * 182.40603 * 18 17 16 44 44 H 1.08990 * 109.46309 * 294.17509 * 19 14 13 45 45 H 1.09001 * 109.46471 * 54.14276 * 19 14 13 46 46 H 1.09007 * 109.47020 * 47.52264 * 20 10 9 47 47 H 1.08996 * 109.47325 * 167.52401 * 20 10 9 48 48 H 1.07999 * 119.99537 * 359.97438 * 22 21 20 49 49 H 1.08000 * 119.99683 * 180.23433 * 23 22 21 50 50 H 1.08008 * 119.99690 * 179.72555 * 24 23 22 51 51 H 1.08010 * 120.00135 * 179.97438 * 25 24 23 52 52 H 1.07998 * 120.00377 * 0.02562 * 26 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4464 2.6527 0.7000 6 1 3.5465 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0017 10 7 2.2009 -3.6127 0.1277 11 6 2.9256 -3.5446 1.4037 12 6 1.9472 -3.7682 2.5585 13 6 2.7020 -3.6980 3.8874 14 7 1.7628 -3.9133 4.9961 15 6 2.4789 -4.0890 6.2660 16 6 1.4827 -4.4543 7.3688 17 6 0.4411 -3.3395 7.4987 18 6 -0.2566 -3.1439 6.1497 19 6 0.7901 -2.8165 5.0824 20 6 3.1337 -3.6400 -1.0068 21 6 2.4088 -4.1087 -2.2420 22 6 2.2651 -5.4615 -2.4877 23 6 1.5960 -5.8913 -3.6183 24 6 1.0797 -4.9685 -4.5086 25 6 1.2279 -3.6158 -4.2657 26 6 1.8925 -3.1859 -3.1324 27 1 -0.4851 0.8400 -0.0004 28 1 0.6959 -2.5989 -0.9310 29 1 0.5566 -2.5171 0.8415 30 1 3.3901 -2.5639 1.5058 31 1 3.6958 -4.3156 1.4257 32 1 1.4826 -4.7490 2.4564 33 1 1.1769 -2.9973 2.5366 34 1 3.1669 -2.7174 3.9897 35 1 3.4721 -4.4692 3.9091 36 1 2.9865 -3.1606 6.5281 37 1 3.2136 -4.8873 6.1612 38 1 2.0125 -4.5693 8.3144 39 1 0.9846 -5.3897 7.1139 40 1 -0.2956 -3.6154 8.2531 41 1 0.9342 -2.4126 7.7915 42 1 -0.7820 -4.0587 5.8757 43 1 -0.9693 -2.3226 6.2244 44 1 1.3056 -1.8942 5.3500 45 1 0.2982 -2.6906 4.1179 46 1 3.5296 -2.6385 -1.1758 47 1 3.9543 -4.3226 -0.7861 48 1 2.6727 -6.1824 -1.7945 49 1 1.4805 -6.9482 -3.8083 50 1 0.5607 -5.3044 -5.3943 51 1 0.8248 -2.8948 -4.9616 52 1 2.0090 -2.1290 -2.9430 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001209447782.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:09:42 Heat of formation + Delta-G solvation = 0.082094 kcal Electronic energy + Delta-G solvation = -26892.782041 eV Core-core repulsion = 23469.417637 eV Total energy + Delta-G solvation = -3423.364404 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.31679 -39.93932 -38.35107 -35.38654 -34.55479 -32.89497 -31.79387 -31.65692 -31.07660 -28.92856 -26.98258 -25.86729 -24.69247 -23.91275 -23.28192 -22.76601 -21.53162 -21.15461 -20.59110 -18.53231 -17.43047 -17.19371 -16.88350 -16.41633 -16.20103 -16.01497 -15.92629 -15.49833 -15.25628 -15.16969 -14.77618 -14.48501 -14.29482 -14.14600 -14.10156 -13.83213 -13.37977 -13.21594 -13.08743 -12.94190 -12.83113 -12.61680 -12.39492 -12.36171 -12.28355 -12.11971 -11.85007 -11.82511 -11.68667 -11.60527 -11.55048 -11.41921 -11.21076 -11.03078 -10.57176 -9.66890 -9.52406 -9.27814 -8.94858 -8.12528 -6.30356 0.59086 0.64401 1.31561 1.32940 1.41689 2.34976 2.85715 3.01647 3.11899 3.58461 3.89586 3.90505 4.02652 4.06945 4.14213 4.14981 4.28729 4.29855 4.36987 4.40440 4.45576 4.51984 4.55410 4.62267 4.66372 4.70168 4.75541 4.79335 4.84729 4.87184 4.91800 4.96814 4.98737 5.06154 5.08819 5.21872 5.24874 5.29893 5.30438 5.32664 5.36757 5.41019 5.46917 5.50999 5.69704 5.73219 5.80230 5.91468 6.10456 6.12312 6.23029 6.26945 6.31738 6.59875 6.90819 7.39278 8.89009 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.010518 B = 0.003722 C = 0.003005 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2661.547234 B = 7520.429291 C = 9315.397093 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C 0.017 3.983 3 Si 0.943 3.057 4 H -0.275 1.275 5 H -0.283 1.283 6 H -0.270 1.270 7 C -0.542 4.542 8 H 0.053 0.947 9 C 0.207 3.793 10 N -0.534 5.534 11 C 0.069 3.931 12 C -0.093 4.093 13 C 0.068 3.932 14 N -0.542 5.542 15 C 0.051 3.949 16 C -0.111 4.111 17 C -0.118 4.118 18 C -0.114 4.114 19 C 0.052 3.948 20 C 0.096 3.904 21 C -0.077 4.077 22 C -0.110 4.110 23 C -0.126 4.126 24 C -0.128 4.128 25 C -0.137 4.137 26 C -0.124 4.124 27 H 0.262 0.738 28 H 0.002 0.998 29 H 0.005 0.995 30 H 0.018 0.982 31 H 0.081 0.919 32 H 0.065 0.935 33 H 0.035 0.965 34 H 0.018 0.982 35 H 0.091 0.909 36 H 0.025 0.975 37 H 0.085 0.915 38 H 0.085 0.915 39 H 0.068 0.932 40 H 0.079 0.921 41 H 0.056 0.944 42 H 0.067 0.933 43 H 0.067 0.933 44 H 0.019 0.981 45 H 0.054 0.946 46 H 0.029 0.971 47 H 0.087 0.913 48 H 0.134 0.866 49 H 0.150 0.850 50 H 0.146 0.854 51 H 0.127 0.873 52 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.822 -11.316 6.488 13.907 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.563 5.563 2 C -0.182 4.182 3 Si 0.769 3.231 4 H -0.200 1.200 5 H -0.209 1.209 6 H -0.194 1.194 7 C -0.581 4.581 8 H 0.071 0.929 9 C 0.081 3.919 10 N -0.257 5.257 11 C -0.060 4.060 12 C -0.132 4.132 13 C -0.060 4.060 14 N -0.267 5.267 15 C -0.076 4.076 16 C -0.149 4.149 17 C -0.156 4.156 18 C -0.152 4.152 19 C -0.076 4.076 20 C -0.031 4.031 21 C -0.078 4.078 22 C -0.129 4.129 23 C -0.144 4.144 24 C -0.146 4.146 25 C -0.155 4.155 26 C -0.143 4.143 27 H 0.071 0.929 28 H 0.020 0.980 29 H 0.023 0.977 30 H 0.037 0.963 31 H 0.099 0.901 32 H 0.084 0.916 33 H 0.054 0.946 34 H 0.037 0.963 35 H 0.110 0.890 36 H 0.044 0.956 37 H 0.104 0.896 38 H 0.104 0.896 39 H 0.087 0.913 40 H 0.098 0.902 41 H 0.075 0.925 42 H 0.086 0.914 43 H 0.086 0.914 44 H 0.037 0.963 45 H 0.072 0.928 46 H 0.048 0.952 47 H 0.105 0.895 48 H 0.152 0.848 49 H 0.167 0.833 50 H 0.164 0.836 51 H 0.145 0.855 52 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 4.160 -12.072 6.416 14.290 hybrid contribution 0.890 3.261 -0.078 3.381 sum 5.049 -8.811 6.338 11.971 Atomic orbital electron populations 1.70066 1.07369 1.27429 1.51461 1.25658 0.95401 1.02170 0.94976 0.85780 0.78835 0.80137 0.78333 1.20036 1.20907 1.19424 1.21869 0.93009 0.92867 1.50373 0.92873 1.19327 0.91307 0.86257 0.95038 1.62462 1.17244 1.44700 1.01271 1.21890 0.95744 0.99192 0.89169 1.21338 0.97900 1.01241 0.92674 1.21962 0.94383 0.99561 0.90084 1.61940 1.17039 1.43204 1.04505 1.22201 0.96294 1.00188 0.88917 1.21577 0.96673 0.98863 0.97789 1.21582 0.98605 0.98902 0.96493 1.21569 0.96998 1.01977 0.94608 1.22085 0.94551 0.91415 0.99528 1.20947 0.93840 0.99279 0.89083 1.19893 0.98740 0.94125 0.95040 1.21198 0.99454 0.94445 0.97793 1.21445 0.97983 1.00749 0.94241 1.21403 1.00225 0.92433 1.00544 1.21318 0.99608 0.97180 0.97369 1.21172 0.98786 0.99003 0.95341 0.92894 0.97974 0.97653 0.96340 0.90064 0.91644 0.94582 0.96345 0.89031 0.95626 0.89633 0.89617 0.91289 0.90244 0.92530 0.91442 0.91409 0.96273 0.92793 0.95242 0.89522 0.84821 0.83276 0.83591 0.85548 0.88758 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.31 13.29 21.45 0.28 -55.02 16 2 C 0.02 0.98 5.46 84.66 0.46 1.44 16 3 Si 0.94 44.33 29.54 68.60 2.03 46.36 16 4 H -0.27 -12.60 7.11 99.48 0.71 -11.89 16 5 H -0.28 -13.13 7.11 99.48 0.71 -12.43 16 6 H -0.27 -12.30 7.11 99.48 0.71 -11.59 16 7 C -0.54 -29.77 7.33 25.60 0.19 -29.58 16 8 H 0.05 2.89 5.96 -2.91 -0.02 2.87 16 9 C 0.21 10.91 4.72 85.56 0.40 11.32 16 10 N -0.53 -22.83 4.65 -905.37 -4.21 -27.04 16 11 C 0.07 2.60 4.77 86.30 0.41 3.01 16 12 C -0.09 -3.41 5.07 30.59 0.16 -3.26 16 13 C 0.07 2.07 4.96 86.30 0.43 2.50 16 14 N -0.54 -15.48 4.66 -896.38 -4.17 -19.66 16 15 C 0.05 1.15 5.46 86.33 0.47 1.62 16 16 C -0.11 -2.05 6.09 30.65 0.19 -1.86 16 17 C -0.12 -2.30 6.00 30.68 0.18 -2.12 16 18 C -0.11 -2.80 6.09 30.65 0.19 -2.62 16 19 C 0.05 1.61 5.29 86.33 0.46 2.07 16 20 C 0.10 3.73 4.95 85.56 0.42 4.16 16 21 C -0.08 -2.90 4.92 -19.87 -0.10 -3.00 16 22 C -0.11 -3.44 9.72 22.27 0.22 -3.22 16 23 C -0.13 -3.38 10.05 22.27 0.22 -3.16 16 24 C -0.13 -3.52 10.05 22.27 0.22 -3.29 16 25 C -0.14 -4.53 10.05 22.27 0.22 -4.31 16 26 C -0.12 -4.92 8.50 22.27 0.19 -4.73 16 27 H 0.26 14.91 8.31 -92.71 -0.77 14.14 16 28 H 0.00 0.13 6.59 -2.38 -0.02 0.11 16 29 H 0.01 0.31 6.36 -2.39 -0.02 0.30 16 30 H 0.02 0.78 6.57 -2.39 -0.02 0.77 16 31 H 0.08 2.55 7.86 -2.39 -0.02 2.53 16 32 H 0.06 2.39 8.14 -2.38 -0.02 2.37 16 33 H 0.04 1.59 4.79 -2.39 -0.01 1.58 16 34 H 0.02 0.60 8.12 -2.38 -0.02 0.58 16 35 H 0.09 2.33 7.99 -2.39 -0.02 2.31 16 36 H 0.03 0.59 8.14 -2.39 -0.02 0.57 16 37 H 0.09 1.66 8.01 -2.39 -0.02 1.65 16 38 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 39 H 0.07 1.31 8.14 -2.39 -0.02 1.30 16 40 H 0.08 1.27 8.14 -2.39 -0.02 1.26 16 41 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 42 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 43 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 44 H 0.02 0.61 8.14 -2.39 -0.02 0.59 16 45 H 0.05 1.99 6.21 -2.39 -0.01 1.97 16 46 H 0.03 1.28 6.07 -2.38 -0.01 1.27 16 47 H 0.09 2.82 7.78 -2.39 -0.02 2.80 16 48 H 0.13 3.60 8.06 -2.91 -0.02 3.58 16 49 H 0.15 2.90 8.06 -2.91 -0.02 2.88 16 50 H 0.15 2.99 8.06 -2.91 -0.02 2.96 16 51 H 0.13 3.72 8.06 -2.91 -0.02 3.70 16 52 H 0.09 4.25 8.06 -2.91 -0.02 4.23 16 Total: -1.00 -64.18 397.11 -0.28 -64.46 By element: Atomic # 1 Polarization: 25.08 SS G_CDS: 0.86 Total: 25.94 kcal Atomic # 6 Polarization: -39.97 SS G_CDS: 4.94 Total: -35.04 kcal Atomic # 7 Polarization: -93.62 SS G_CDS: -8.10 Total: -101.72 kcal Atomic # 14 Polarization: 44.33 SS G_CDS: 2.03 Total: 46.36 kcal Total: -64.18 -0.28 -64.46 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001209447782.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.541 kcal (2) G-P(sol) polarization free energy of solvation -64.178 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.363 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.281 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.459 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.082 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds