Wall clock time and date at job start Tue Mar 31 2020 12:07:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.37971 * 119.72700 * 2 1 4 4 C 1.38223 * 119.76826 * 180.02562 * 3 2 1 5 5 C 1.37970 * 119.77402 * 359.88184 * 4 3 2 6 6 C 1.50704 * 119.72791 * 180.02562 * 5 4 3 7 7 C 1.38873 * 120.54519 * 0.03843 * 5 4 3 8 8 C 1.37706 * 119.67850 * 0.16414 * 7 5 4 9 9 C 1.50629 * 122.55976 * 179.66579 * 8 7 5 10 10 C 1.52736 * 110.57951 * 17.59994 * 9 8 7 11 11 C 1.53325 * 108.37215 * 308.88986 * 10 9 8 12 12 C 1.50635 * 117.75194 * 180.22381 * 7 5 4 13 13 H 1.09003 * 109.21638 * 77.18871 * 12 7 5 14 14 O 1.42901 * 109.25053 * 317.74671 * 12 7 5 15 15 C 1.42904 * 113.99621 * 148.90174 * 14 12 7 16 16 C 1.53002 * 109.46807 * 179.97438 * 15 14 12 17 17 C 1.53006 * 109.47009 * 179.97438 * 16 15 14 18 18 C 1.52994 * 109.47099 * 180.02562 * 17 16 15 19 19 C 1.53002 * 109.47237 * 180.02562 * 18 17 16 20 20 C 1.50695 * 109.47278 * 180.02562 * 19 18 17 21 21 H 1.08007 * 120.00106 * 359.97438 * 20 19 18 22 22 C 1.37875 * 120.00041 * 179.97438 * 20 19 18 23 23 N 1.31509 * 120.00068 * 359.97438 * 22 20 19 24 24 Si 1.86803 * 120.00190 * 179.97438 * 22 20 19 25 25 H 1.48506 * 109.46970 * 59.99748 * 24 22 20 26 26 H 1.48500 * 109.47135 * 179.97438 * 24 22 20 27 27 H 1.48504 * 109.47078 * 300.00204 * 24 22 20 28 28 H 1.08998 * 109.47047 * 269.97662 * 1 2 3 29 29 H 1.09005 * 109.47458 * 29.97782 * 1 2 3 30 30 H 1.09000 * 109.47364 * 149.97643 * 1 2 3 31 31 H 1.08001 * 120.11945 * 359.97438 * 3 2 1 32 32 H 1.08004 * 120.10908 * 179.90131 * 4 3 2 33 33 H 1.08998 * 109.46788 * 270.02363 * 6 5 4 34 34 H 1.09001 * 109.47027 * 30.02006 * 6 5 4 35 35 H 1.09000 * 109.47200 * 150.02302 * 6 5 4 36 36 H 1.08998 * 109.25547 * 257.31045 * 9 8 7 37 37 H 1.09008 * 109.25503 * 137.88297 * 9 8 7 38 38 H 1.08997 * 109.68181 * 68.61115 * 10 9 8 39 39 H 1.08996 * 109.68375 * 189.13071 * 10 9 8 40 40 H 1.08994 * 109.68443 * 189.65727 * 11 10 9 41 41 H 1.09005 * 109.67982 * 310.20835 * 11 10 9 42 42 H 1.09000 * 109.46834 * 299.99280 * 15 14 12 43 43 H 1.08991 * 109.47620 * 59.98968 * 15 14 12 44 44 H 1.09000 * 109.47097 * 299.99439 * 16 15 14 45 45 H 1.09000 * 109.47330 * 59.99860 * 16 15 14 46 46 H 1.09000 * 109.47167 * 299.99927 * 17 16 15 47 47 H 1.08999 * 109.46739 * 59.99482 * 17 16 15 48 48 H 1.09008 * 109.47182 * 299.99861 * 18 17 16 49 49 H 1.08991 * 109.47739 * 59.99681 * 18 17 16 50 50 H 1.09008 * 109.46492 * 299.99757 * 19 18 17 51 51 H 1.08999 * 109.47100 * 59.98966 * 19 18 17 52 52 H 0.97001 * 120.00110 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1912 1.1981 0.0000 4 6 3.5734 1.1991 -0.0005 5 6 4.2594 0.0021 0.0014 6 6 5.7664 0.0044 0.0014 7 6 3.5726 -1.2050 0.0031 8 6 2.1955 -1.2059 -0.0006 9 6 1.3858 -2.4760 -0.0065 10 6 2.2452 -3.6627 0.4247 11 6 3.5264 -3.6628 -0.4175 12 6 4.3843 -2.4738 0.0104 13 1 4.7663 -2.6496 1.0160 14 8 5.4827 -2.3357 -0.8933 15 6 6.6475 -3.0686 -0.5086 16 6 7.7532 -2.8487 -1.5431 17 6 9.0006 -3.6329 -1.1309 18 6 10.1064 -3.4125 -2.1650 19 6 11.3537 -4.1972 -1.7531 20 6 12.4430 -3.9796 -2.7713 21 1 12.2637 -3.3453 -3.6270 22 6 13.6688 -4.5901 -2.6107 23 7 13.8874 -5.3620 -1.5686 24 14 15.0190 -4.3210 -3.8732 25 1 15.3458 -2.8742 -3.9477 26 1 16.2299 -5.0815 -3.4727 27 1 14.5547 -4.7926 -5.2027 28 1 -0.3633 -0.0004 1.0276 29 1 -0.3634 0.8902 -0.5135 30 1 -0.3634 -0.8898 -0.5142 31 1 1.6486 2.1320 -0.0004 32 1 4.1145 2.1338 -0.0021 33 1 6.1297 0.0037 -1.0263 34 1 6.1284 0.8956 0.5141 35 1 6.1311 -0.8844 0.5163 36 1 1.0046 -2.6547 -1.0119 37 1 0.5470 -2.3707 0.6818 38 1 2.4997 -3.5673 1.4803 39 1 1.6978 -4.5910 0.2616 40 1 4.0749 -4.5899 -0.2514 41 1 3.2717 -3.5706 -1.4733 42 1 6.9885 -2.7228 0.4672 43 1 6.4073 -4.1304 -0.4541 44 1 7.4120 -3.1948 -2.5187 45 1 7.9936 -1.7870 -1.5979 46 1 9.3417 -3.2865 -0.1553 47 1 8.7605 -4.6947 -1.0758 48 1 9.7656 -3.7587 -3.1408 49 1 10.3464 -2.3507 -2.2197 50 1 11.6946 -3.8514 -0.7772 51 1 11.1133 -5.2590 -1.6987 52 1 14.7499 -5.7912 -1.4554 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001224370190.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:07:58 Heat of formation + Delta-G solvation = -72.297048 kcal Electronic energy + Delta-G solvation = -26088.330403 eV Core-core repulsion = 22629.534653 eV Total energy + Delta-G solvation = -3458.795750 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.214 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.78815 -38.22582 -36.17349 -35.29891 -34.05877 -32.76180 -30.61181 -30.49194 -29.40106 -28.96758 -26.36116 -24.86842 -23.81254 -23.26992 -23.07187 -21.07490 -20.30595 -19.96992 -19.68213 -16.79783 -16.54140 -16.13814 -16.09148 -15.66076 -15.23070 -14.83310 -14.46109 -14.40520 -14.34763 -13.82732 -13.51500 -13.30345 -13.13811 -12.89721 -12.73852 -12.61407 -12.47511 -12.30757 -12.07162 -11.91167 -11.86764 -11.54151 -11.41824 -11.36469 -11.23289 -11.03928 -10.93477 -10.77394 -10.58649 -10.45494 -10.38823 -10.34293 -9.61098 -9.51505 -9.23030 -8.99399 -8.75942 -8.47461 -8.30871 -5.96216 -3.98278 1.14447 1.18055 3.35639 3.36810 3.39609 3.42537 3.72718 4.34741 4.36857 4.49054 4.61355 4.68403 4.77528 4.79691 4.91460 4.97685 5.01579 5.10324 5.15556 5.19609 5.27079 5.30105 5.39235 5.41754 5.45176 5.49206 5.53915 5.55733 5.59004 5.68569 5.73429 5.74259 5.77516 5.80048 5.85542 5.98837 6.02002 6.10663 6.22950 6.31030 6.32501 6.41795 6.44727 6.51954 6.56392 6.84486 6.85651 6.98209 7.20500 7.22019 7.72368 7.88301 8.04741 8.48044 9.08995 9.65438 11.15100 Molecular weight = 316.21amu Principal moments of inertia in cm(-1) A = 0.027345 B = 0.001978 C = 0.001887 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1023.701220 B =14151.492447 C =14836.828611 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.103 4.103 3 C -0.112 4.112 4 C -0.128 4.128 5 C -0.062 4.062 6 C -0.108 4.108 7 C -0.080 4.080 8 C -0.063 4.063 9 C -0.081 4.081 10 C -0.117 4.117 11 C -0.141 4.141 12 C 0.134 3.866 13 H 0.068 0.932 14 O -0.372 6.372 15 C 0.059 3.941 16 C -0.115 4.115 17 C -0.116 4.116 18 C -0.109 4.109 19 C 0.020 3.980 20 C -0.520 4.520 21 H 0.054 0.946 22 C 0.055 3.945 23 N -0.897 5.897 24 Si 0.892 3.108 25 H -0.277 1.277 26 H -0.288 1.288 27 H -0.277 1.277 28 H 0.067 0.933 29 H 0.064 0.936 30 H 0.067 0.933 31 H 0.119 0.881 32 H 0.121 0.879 33 H 0.079 0.921 34 H 0.053 0.947 35 H 0.069 0.931 36 H 0.077 0.923 37 H 0.075 0.925 38 H 0.065 0.935 39 H 0.071 0.929 40 H 0.070 0.930 41 H 0.076 0.924 42 H 0.048 0.952 43 H 0.047 0.953 44 H 0.067 0.933 45 H 0.067 0.933 46 H 0.057 0.943 47 H 0.056 0.944 48 H 0.047 0.953 49 H 0.047 0.953 50 H 0.014 0.986 51 H 0.014 0.986 52 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.749 9.270 6.677 31.867 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.103 4.103 3 C -0.130 4.130 4 C -0.146 4.146 5 C -0.062 4.062 6 C -0.164 4.164 7 C -0.080 4.080 8 C -0.063 4.063 9 C -0.118 4.118 10 C -0.155 4.155 11 C -0.178 4.178 12 C 0.077 3.923 13 H 0.086 0.914 14 O -0.292 6.292 15 C -0.018 4.018 16 C -0.153 4.153 17 C -0.153 4.153 18 C -0.147 4.147 19 C -0.017 4.017 20 C -0.558 4.558 21 H 0.072 0.928 22 C -0.146 4.146 23 N -0.536 5.536 24 Si 0.720 3.280 25 H -0.203 1.203 26 H -0.213 1.213 27 H -0.203 1.203 28 H 0.086 0.914 29 H 0.083 0.917 30 H 0.085 0.915 31 H 0.137 0.863 32 H 0.139 0.861 33 H 0.097 0.903 34 H 0.072 0.928 35 H 0.087 0.913 36 H 0.095 0.905 37 H 0.094 0.906 38 H 0.084 0.916 39 H 0.090 0.910 40 H 0.088 0.912 41 H 0.094 0.906 42 H 0.066 0.934 43 H 0.066 0.934 44 H 0.085 0.915 45 H 0.085 0.915 46 H 0.075 0.925 47 H 0.075 0.925 48 H 0.066 0.934 49 H 0.066 0.934 50 H 0.033 0.967 51 H 0.033 0.967 52 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -29.613 9.268 6.595 31.723 hybrid contribution 0.883 0.026 -0.439 0.987 sum -28.730 9.294 6.155 30.817 Atomic orbital electron populations 1.20802 0.91420 1.02692 1.02077 1.19801 0.95841 0.92561 1.02123 1.20925 0.94237 0.97257 1.00604 1.20959 0.94146 0.97530 1.01948 1.19952 0.96587 0.92182 0.97445 1.20912 0.90604 1.01770 1.03099 1.19328 0.92375 0.93900 1.02364 1.19368 0.92329 0.94543 1.00072 1.20522 0.97529 0.91670 1.02074 1.21523 0.95942 0.98057 0.99970 1.22043 0.96343 0.98176 1.01268 1.20620 0.86703 0.91704 0.93308 0.91439 1.88053 1.21687 1.70476 1.48966 1.22692 0.85570 0.95165 0.98334 1.21591 0.93675 1.01603 0.98393 1.21586 0.94247 0.99331 1.00153 1.21609 0.95766 1.00406 0.96912 1.19106 0.90921 0.95080 0.96600 1.21259 0.97415 1.28731 1.08429 0.92790 1.25036 0.98625 0.95294 0.95616 1.69956 1.23641 1.31550 1.28484 0.86665 0.81305 0.78235 0.81827 1.20266 1.21317 1.20263 0.91392 0.91735 0.91452 0.86252 0.86082 0.90274 0.92765 0.91258 0.90495 0.90632 0.91583 0.91017 0.91153 0.90577 0.93410 0.93422 0.91474 0.91471 0.92469 0.92475 0.93450 0.93430 0.96720 0.96723 0.93020 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.72 9.14 36.01 0.33 -0.39 16 2 C -0.10 -0.95 5.89 -104.49 -0.61 -1.57 16 3 C -0.11 -1.04 9.68 -39.68 -0.38 -1.43 16 4 C -0.13 -1.31 9.68 -39.69 -0.38 -1.69 16 5 C -0.06 -0.70 5.82 -104.48 -0.61 -1.31 16 6 C -0.11 -1.18 8.32 36.01 0.30 -0.89 16 7 C -0.08 -0.90 5.57 -104.61 -0.58 -1.48 16 8 C -0.06 -0.63 5.74 -104.62 -0.60 -1.23 16 9 C -0.08 -0.62 4.45 -28.05 -0.12 -0.74 16 10 C -0.12 -0.87 5.98 -26.70 -0.16 -1.03 16 11 C -0.14 -1.30 5.57 -26.70 -0.15 -1.45 16 12 C 0.13 1.45 1.84 -28.05 -0.05 1.40 16 13 H 0.07 0.69 7.73 -51.93 -0.40 0.29 16 14 O -0.37 -4.65 7.22 -35.23 -0.25 -4.91 16 15 C 0.06 0.71 5.13 37.16 0.19 0.91 16 16 C -0.12 -1.62 5.58 -26.73 -0.15 -1.77 16 17 C -0.12 -1.94 5.21 -26.73 -0.14 -2.08 16 18 C -0.11 -2.28 5.15 -26.73 -0.14 -2.42 16 19 C 0.02 0.52 4.97 -27.88 -0.14 0.39 16 20 C -0.52 -15.06 9.11 -34.44 -0.31 -15.38 16 21 H 0.05 1.52 7.74 -52.48 -0.41 1.11 16 22 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 23 N -0.90 -27.37 13.29 55.43 0.74 -26.63 16 24 Si 0.89 22.00 29.54 -169.99 -5.02 16.98 16 25 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 26 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 27 H -0.28 -6.71 7.11 56.52 0.40 -6.30 16 28 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 29 H 0.06 0.36 8.08 -51.93 -0.42 -0.06 16 30 H 0.07 0.38 6.71 -51.93 -0.35 0.03 16 31 H 0.12 0.85 8.06 -52.49 -0.42 0.43 16 32 H 0.12 1.03 8.06 -52.48 -0.42 0.61 16 33 H 0.08 0.94 7.87 -51.93 -0.41 0.53 16 34 H 0.05 0.52 8.08 -51.93 -0.42 0.10 16 35 H 0.07 0.78 4.86 -51.93 -0.25 0.53 16 36 H 0.08 0.55 8.10 -51.93 -0.42 0.13 16 37 H 0.08 0.47 7.18 -51.92 -0.37 0.10 16 38 H 0.07 0.49 8.10 -51.93 -0.42 0.07 16 39 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 40 H 0.07 0.62 8.09 -51.93 -0.42 0.20 16 41 H 0.08 0.77 8.10 -51.93 -0.42 0.35 16 42 H 0.05 0.55 7.27 -51.93 -0.38 0.17 16 43 H 0.05 0.55 8.09 -51.93 -0.42 0.13 16 44 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 45 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 46 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 47 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 48 H 0.05 0.98 8.14 -51.92 -0.42 0.56 16 49 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 50 H 0.01 0.40 8.14 -51.92 -0.42 -0.02 16 51 H 0.01 0.40 8.14 -51.93 -0.42 -0.02 16 52 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 LS Contribution 401.51 15.07 6.05 6.05 Total: -1.00 -31.30 401.51 -12.02 -43.32 By element: Atomic # 1 Polarization: 5.56 SS G_CDS: -9.72 Total: -4.15 kcal Atomic # 6 Polarization: -26.83 SS G_CDS: -3.82 Total: -30.65 kcal Atomic # 7 Polarization: -27.37 SS G_CDS: 0.74 Total: -26.63 kcal Atomic # 8 Polarization: -4.65 SS G_CDS: -0.25 Total: -4.91 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -5.02 Total: 16.98 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -31.30 -12.02 -43.32 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224370190.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.981 kcal (2) G-P(sol) polarization free energy of solvation -31.295 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.276 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.021 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.316 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.297 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds