Wall clock time and date at job start Tue Mar 31 2020 12:07:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.37971 * 119.72700 * 2 1 4 4 C 1.38223 * 119.76826 * 180.02562 * 3 2 1 5 5 C 1.37970 * 119.77402 * 359.88184 * 4 3 2 6 6 C 1.50704 * 119.72791 * 180.02562 * 5 4 3 7 7 C 1.38873 * 120.54519 * 0.03843 * 5 4 3 8 8 C 1.37706 * 119.67850 * 0.16414 * 7 5 4 9 9 C 1.50629 * 122.55976 * 179.66579 * 8 7 5 10 10 C 1.52736 * 110.57951 * 17.59994 * 9 8 7 11 11 C 1.53325 * 108.37215 * 308.88986 * 10 9 8 12 12 C 1.50635 * 117.75194 * 180.22381 * 7 5 4 13 13 H 1.09003 * 109.21638 * 77.18871 * 12 7 5 14 14 O 1.42901 * 109.25053 * 317.74671 * 12 7 5 15 15 C 1.42904 * 113.99621 * 148.90174 * 14 12 7 16 16 C 1.53002 * 109.46807 * 179.97438 * 15 14 12 17 17 C 1.53006 * 109.47009 * 179.97438 * 16 15 14 18 18 C 1.52994 * 109.47099 * 180.02562 * 17 16 15 19 19 C 1.53002 * 109.47237 * 180.02562 * 18 17 16 20 20 C 1.50695 * 109.47278 * 180.02562 * 19 18 17 21 21 H 1.08007 * 120.00106 * 359.97438 * 20 19 18 22 22 C 1.37875 * 120.00041 * 179.97438 * 20 19 18 23 23 N 1.31509 * 120.00068 * 359.97438 * 22 20 19 24 24 Si 1.86803 * 120.00190 * 179.97438 * 22 20 19 25 25 H 1.48506 * 109.46970 * 59.99748 * 24 22 20 26 26 H 1.48500 * 109.47135 * 179.97438 * 24 22 20 27 27 H 1.48504 * 109.47078 * 300.00204 * 24 22 20 28 28 H 1.08998 * 109.47047 * 269.97662 * 1 2 3 29 29 H 1.09005 * 109.47458 * 29.97782 * 1 2 3 30 30 H 1.09000 * 109.47364 * 149.97643 * 1 2 3 31 31 H 1.08001 * 120.11945 * 359.97438 * 3 2 1 32 32 H 1.08004 * 120.10908 * 179.90131 * 4 3 2 33 33 H 1.08998 * 109.46788 * 270.02363 * 6 5 4 34 34 H 1.09001 * 109.47027 * 30.02006 * 6 5 4 35 35 H 1.09000 * 109.47200 * 150.02302 * 6 5 4 36 36 H 1.08998 * 109.25547 * 257.31045 * 9 8 7 37 37 H 1.09008 * 109.25503 * 137.88297 * 9 8 7 38 38 H 1.08997 * 109.68181 * 68.61115 * 10 9 8 39 39 H 1.08996 * 109.68375 * 189.13071 * 10 9 8 40 40 H 1.08994 * 109.68443 * 189.65727 * 11 10 9 41 41 H 1.09005 * 109.67982 * 310.20835 * 11 10 9 42 42 H 1.09000 * 109.46834 * 299.99280 * 15 14 12 43 43 H 1.08991 * 109.47620 * 59.98968 * 15 14 12 44 44 H 1.09000 * 109.47097 * 299.99439 * 16 15 14 45 45 H 1.09000 * 109.47330 * 59.99860 * 16 15 14 46 46 H 1.09000 * 109.47167 * 299.99927 * 17 16 15 47 47 H 1.08999 * 109.46739 * 59.99482 * 17 16 15 48 48 H 1.09008 * 109.47182 * 299.99861 * 18 17 16 49 49 H 1.08991 * 109.47739 * 59.99681 * 18 17 16 50 50 H 1.09008 * 109.46492 * 299.99757 * 19 18 17 51 51 H 1.08999 * 109.47100 * 59.98966 * 19 18 17 52 52 H 0.97001 * 120.00110 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1912 1.1981 0.0000 4 6 3.5734 1.1991 -0.0005 5 6 4.2594 0.0021 0.0014 6 6 5.7664 0.0044 0.0014 7 6 3.5726 -1.2050 0.0031 8 6 2.1955 -1.2059 -0.0006 9 6 1.3858 -2.4760 -0.0065 10 6 2.2452 -3.6627 0.4247 11 6 3.5264 -3.6628 -0.4175 12 6 4.3843 -2.4738 0.0104 13 1 4.7663 -2.6496 1.0160 14 8 5.4827 -2.3357 -0.8933 15 6 6.6475 -3.0686 -0.5086 16 6 7.7532 -2.8487 -1.5431 17 6 9.0006 -3.6329 -1.1309 18 6 10.1064 -3.4125 -2.1650 19 6 11.3537 -4.1972 -1.7531 20 6 12.4430 -3.9796 -2.7713 21 1 12.2637 -3.3453 -3.6270 22 6 13.6688 -4.5901 -2.6107 23 7 13.8874 -5.3620 -1.5686 24 14 15.0190 -4.3210 -3.8732 25 1 15.3458 -2.8742 -3.9477 26 1 16.2299 -5.0815 -3.4727 27 1 14.5547 -4.7926 -5.2027 28 1 -0.3633 -0.0004 1.0276 29 1 -0.3634 0.8902 -0.5135 30 1 -0.3634 -0.8898 -0.5142 31 1 1.6486 2.1320 -0.0004 32 1 4.1145 2.1338 -0.0021 33 1 6.1297 0.0037 -1.0263 34 1 6.1284 0.8956 0.5141 35 1 6.1311 -0.8844 0.5163 36 1 1.0046 -2.6547 -1.0119 37 1 0.5470 -2.3707 0.6818 38 1 2.4997 -3.5673 1.4803 39 1 1.6978 -4.5910 0.2616 40 1 4.0749 -4.5899 -0.2514 41 1 3.2717 -3.5706 -1.4733 42 1 6.9885 -2.7228 0.4672 43 1 6.4073 -4.1304 -0.4541 44 1 7.4120 -3.1948 -2.5187 45 1 7.9936 -1.7870 -1.5979 46 1 9.3417 -3.2865 -0.1553 47 1 8.7605 -4.6947 -1.0758 48 1 9.7656 -3.7587 -3.1408 49 1 10.3464 -2.3507 -2.2197 50 1 11.6946 -3.8514 -0.7772 51 1 11.1133 -5.2590 -1.6987 52 1 14.7499 -5.7912 -1.4554 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001224370190.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:07:57 Heat of formation + Delta-G solvation = -85.112719 kcal Electronic energy + Delta-G solvation = -26088.886132 eV Core-core repulsion = 22629.534653 eV Total energy + Delta-G solvation = -3459.351479 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.214 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.52181 -39.10685 -37.11826 -36.58633 -35.11254 -34.49982 -32.09609 -31.27993 -30.23556 -29.72954 -28.03248 -25.58188 -25.20748 -24.21988 -23.85731 -22.43665 -21.77302 -20.98014 -20.37979 -18.43804 -17.59990 -17.39739 -16.94384 -16.56287 -16.49409 -16.06943 -15.69242 -15.40480 -15.07997 -14.64492 -14.56872 -14.37865 -14.12480 -13.97296 -13.82386 -13.64309 -13.41098 -13.33088 -13.21580 -13.05976 -12.84410 -12.75682 -12.62308 -12.51857 -12.33206 -12.25507 -12.12138 -11.90498 -11.86946 -11.76535 -11.45923 -11.34944 -11.30702 -11.27882 -10.96595 -10.54847 -10.39011 -9.49872 -9.20438 -8.19920 -6.31175 0.39496 0.44844 1.39159 1.42540 1.50518 2.40644 2.55594 2.90186 3.12542 3.63297 3.71397 3.92594 3.99405 4.03095 4.07674 4.10619 4.14074 4.24114 4.29409 4.34796 4.37433 4.41686 4.49893 4.51784 4.57633 4.73975 4.76340 4.79678 4.86080 4.87233 4.89731 4.90790 4.92699 4.96507 4.99648 5.06860 5.09453 5.12233 5.21583 5.30735 5.31445 5.32744 5.34387 5.39566 5.46138 5.55805 5.60296 5.71657 5.77595 5.78737 5.87226 6.14626 6.26354 6.31906 6.85896 7.37838 8.91582 Molecular weight = 316.21amu Principal moments of inertia in cm(-1) A = 0.027345 B = 0.001978 C = 0.001887 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1023.701220 B =14151.492447 C =14836.828611 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.109 4.109 3 C -0.119 4.119 4 C -0.139 4.139 5 C -0.086 4.086 6 C -0.102 4.102 7 C -0.099 4.099 8 C -0.074 4.074 9 C -0.080 4.080 10 C -0.113 4.113 11 C -0.139 4.139 12 C 0.132 3.868 13 H 0.069 0.931 14 O -0.385 6.385 15 C 0.065 3.935 16 C -0.105 4.105 17 C -0.106 4.106 18 C -0.099 4.099 19 C 0.022 3.978 20 C -0.546 4.546 21 H 0.058 0.942 22 C -0.003 4.003 23 N -0.933 5.933 24 Si 0.966 3.034 25 H -0.267 1.267 26 H -0.282 1.282 27 H -0.267 1.267 28 H 0.079 0.921 29 H 0.073 0.927 30 H 0.075 0.925 31 H 0.140 0.860 32 H 0.132 0.868 33 H 0.065 0.935 34 H 0.062 0.938 35 H 0.063 0.937 36 H 0.082 0.918 37 H 0.093 0.907 38 H 0.067 0.933 39 H 0.089 0.911 40 H 0.073 0.927 41 H 0.064 0.936 42 H 0.055 0.945 43 H 0.055 0.945 44 H 0.064 0.936 45 H 0.066 0.934 46 H 0.058 0.942 47 H 0.058 0.942 48 H 0.048 0.952 49 H 0.049 0.951 50 H -0.009 1.009 51 H -0.009 1.009 52 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -31.442 9.840 6.308 33.544 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.109 4.109 3 C -0.137 4.137 4 C -0.157 4.157 5 C -0.086 4.086 6 C -0.158 4.158 7 C -0.100 4.100 8 C -0.074 4.074 9 C -0.116 4.116 10 C -0.151 4.151 11 C -0.176 4.176 12 C 0.075 3.925 13 H 0.087 0.913 14 O -0.305 6.305 15 C -0.012 4.012 16 C -0.143 4.143 17 C -0.144 4.144 18 C -0.137 4.137 19 C -0.015 4.015 20 C -0.584 4.584 21 H 0.076 0.924 22 C -0.200 4.200 23 N -0.573 5.573 24 Si 0.790 3.210 25 H -0.192 1.192 26 H -0.207 1.207 27 H -0.192 1.192 28 H 0.097 0.903 29 H 0.092 0.908 30 H 0.094 0.906 31 H 0.158 0.842 32 H 0.150 0.850 33 H 0.083 0.917 34 H 0.081 0.919 35 H 0.082 0.918 36 H 0.100 0.900 37 H 0.111 0.889 38 H 0.085 0.915 39 H 0.107 0.893 40 H 0.092 0.908 41 H 0.083 0.917 42 H 0.073 0.927 43 H 0.073 0.927 44 H 0.083 0.917 45 H 0.085 0.915 46 H 0.077 0.923 47 H 0.076 0.924 48 H 0.067 0.933 49 H 0.068 0.932 50 H 0.009 0.991 51 H 0.009 0.991 52 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -31.325 9.846 6.224 33.421 hybrid contribution 1.373 -0.129 -0.298 1.411 sum -29.952 9.717 5.926 32.042 Atomic orbital electron populations 1.20853 0.89287 1.03617 1.03047 1.20204 0.97496 0.92240 1.00997 1.21244 0.94042 0.98398 1.00021 1.21181 0.94913 0.97616 1.01978 1.20119 0.96701 0.92972 0.98837 1.20829 0.90895 1.01903 1.02194 1.19528 0.93243 0.93904 1.03275 1.19707 0.92104 0.95992 0.99626 1.20576 0.97658 0.90553 1.02840 1.21524 0.95083 0.98910 0.99555 1.22025 0.97152 0.97543 1.00918 1.20740 0.86340 0.92375 0.93065 0.91291 1.88022 1.22116 1.70670 1.49698 1.22543 0.85197 0.95639 0.97775 1.21408 0.93087 1.00955 0.98828 1.21427 0.94095 0.99950 0.98879 1.21442 0.94725 0.99429 0.98090 1.19041 0.93004 0.94335 0.95156 1.21720 0.98564 1.29015 1.09131 0.92350 1.26013 1.01402 0.94802 0.97820 1.70089 1.24483 1.32376 1.30391 0.85498 0.77830 0.78613 0.79087 1.19187 1.20691 1.19184 0.90258 0.90805 0.90600 0.84192 0.85048 0.91662 0.91922 0.91806 0.89995 0.88859 0.91474 0.89254 0.90847 0.91683 0.92722 0.92690 0.91721 0.91502 0.92307 0.92351 0.93307 0.93232 0.99062 0.99068 0.92767 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.14 9.14 71.24 0.65 -0.48 16 2 C -0.11 -1.83 5.89 -19.78 -0.12 -1.95 16 3 C -0.12 -2.06 9.68 22.20 0.22 -1.84 16 4 C -0.14 -2.77 9.68 22.20 0.22 -2.56 16 5 C -0.09 -1.98 5.82 -19.77 -0.12 -2.09 16 6 C -0.10 -2.28 8.32 71.24 0.59 -1.69 16 7 C -0.10 -2.21 5.57 -19.86 -0.11 -2.32 16 8 C -0.07 -1.39 5.74 -19.86 -0.11 -1.50 16 9 C -0.08 -1.05 4.45 29.74 0.13 -0.91 16 10 C -0.11 -1.48 5.98 30.62 0.18 -1.29 16 11 C -0.14 -2.45 5.57 30.61 0.17 -2.28 16 12 C 0.13 2.80 1.84 29.74 0.05 2.86 16 13 H 0.07 1.40 7.73 -2.39 -0.02 1.38 16 14 O -0.39 -9.58 7.22 -148.98 -1.08 -10.66 16 15 C 0.06 1.54 5.13 71.98 0.37 1.91 16 16 C -0.11 -2.93 5.58 30.60 0.17 -2.75 16 17 C -0.11 -3.54 5.21 30.59 0.16 -3.38 16 18 C -0.10 -4.18 5.15 30.59 0.16 -4.02 16 19 C 0.02 1.18 4.97 29.85 0.15 1.33 16 20 C -0.55 -32.05 9.11 25.60 0.23 -31.81 16 21 H 0.06 3.28 7.74 -2.91 -0.02 3.26 16 22 C 0.00 -0.16 5.46 84.65 0.46 0.30 16 23 N -0.93 -57.84 13.29 21.45 0.28 -57.55 16 24 Si 0.97 45.09 29.54 68.60 2.03 47.12 16 25 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 26 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 27 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 28 H 0.08 0.65 8.14 -2.39 -0.02 0.63 16 29 H 0.07 0.62 8.08 -2.38 -0.02 0.60 16 30 H 0.08 0.65 6.71 -2.39 -0.02 0.63 16 31 H 0.14 1.72 8.06 -2.91 -0.02 1.70 16 32 H 0.13 2.19 8.06 -2.91 -0.02 2.16 16 33 H 0.06 1.60 7.87 -2.39 -0.02 1.58 16 34 H 0.06 1.23 8.08 -2.39 -0.02 1.21 16 35 H 0.06 1.46 4.86 -2.39 -0.01 1.45 16 36 H 0.08 1.01 8.10 -2.39 -0.02 0.99 16 37 H 0.09 0.90 7.18 -2.38 -0.02 0.88 16 38 H 0.07 0.87 8.10 -2.39 -0.02 0.85 16 39 H 0.09 0.86 8.14 -2.39 -0.02 0.84 16 40 H 0.07 1.22 8.09 -2.39 -0.02 1.20 16 41 H 0.06 1.28 8.10 -2.38 -0.02 1.27 16 42 H 0.05 1.23 7.27 -2.39 -0.02 1.21 16 43 H 0.05 1.23 8.09 -2.39 -0.02 1.21 16 44 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 45 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 46 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 47 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 48 H 0.05 2.02 8.14 -2.38 -0.02 2.00 16 49 H 0.05 2.04 8.14 -2.39 -0.02 2.02 16 50 H -0.01 -0.52 8.14 -2.38 -0.02 -0.54 16 51 H -0.01 -0.53 8.14 -2.39 -0.02 -0.55 16 52 H 0.26 15.32 8.31 -92.71 -0.77 14.55 16 Total: -1.00 -67.70 401.51 5.55 -62.15 By element: Atomic # 1 Polarization: 12.60 SS G_CDS: 0.85 Total: 13.45 kcal Atomic # 6 Polarization: -57.97 SS G_CDS: 3.46 Total: -54.51 kcal Atomic # 7 Polarization: -57.84 SS G_CDS: 0.28 Total: -57.55 kcal Atomic # 8 Polarization: -9.58 SS G_CDS: -1.08 Total: -10.66 kcal Atomic # 14 Polarization: 45.09 SS G_CDS: 2.03 Total: 47.12 kcal Total: -67.70 5.55 -62.15 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224370190.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.961 kcal (2) G-P(sol) polarization free energy of solvation -67.698 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.660 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.547 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.152 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.113 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds