Wall clock time and date at job start Tue Mar 31 2020 12:07:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48504 * 109.47196 * 239.99713 * 3 2 1 5 5 H 1.48504 * 109.46887 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47679 * 119.99347 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 C 1.52996 * 109.47159 * 179.72211 * 9 7 2 11 11 C 1.52994 * 109.47119 * 180.02562 * 10 9 7 12 12 C 1.53003 * 109.46838 * 180.02562 * 11 10 9 13 13 C 1.53003 * 109.47020 * 179.97438 * 12 11 10 14 14 O 1.42892 * 109.47319 * 179.97438 * 13 12 11 15 15 C 1.42906 * 114.00440 * 180.02562 * 14 13 12 16 16 H 1.09000 * 109.46543 * 330.00214 * 15 14 13 17 17 C 1.53000 * 109.47162 * 89.99678 * 15 14 13 18 18 C 1.52996 * 109.47402 * 180.02562 * 17 15 14 19 19 C 1.53001 * 109.46585 * 299.99951 * 18 17 15 20 20 C 1.52997 * 109.47506 * 60.00143 * 19 18 17 21 21 C 1.53001 * 109.47263 * 209.99897 * 15 14 13 22 22 H 1.08996 * 109.46724 * 299.99575 * 21 15 14 23 23 C 1.50691 * 109.47085 * 60.00053 * 21 15 14 24 24 C 1.38241 * 120.00355 * 59.72418 * 23 21 15 25 25 C 1.38232 * 119.99705 * 179.76731 * 24 23 21 26 26 C 1.38231 * 120.00546 * 0.48252 * 25 24 23 27 27 C 1.38238 * 119.99486 * 359.79500 * 26 25 24 28 28 C 1.38234 * 120.00374 * 359.95296 * 27 26 25 29 29 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 30 30 H 1.09004 * 109.46965 * 299.72070 * 9 7 2 31 31 H 1.08994 * 109.46990 * 59.71924 * 9 7 2 32 32 H 1.09004 * 109.47066 * 299.99797 * 10 9 7 33 33 H 1.09000 * 109.47234 * 59.99288 * 10 9 7 34 34 H 1.08998 * 109.46640 * 299.99314 * 11 10 9 35 35 H 1.08994 * 109.47663 * 59.99852 * 11 10 9 36 36 H 1.08998 * 109.46943 * 299.99126 * 12 11 10 37 37 H 1.09002 * 109.47396 * 60.00115 * 12 11 10 38 38 H 1.09004 * 109.47038 * 299.99988 * 13 12 11 39 39 H 1.09000 * 109.47414 * 59.99572 * 13 12 11 40 40 H 1.09003 * 109.47158 * 300.00547 * 17 15 14 41 41 H 1.09005 * 109.47225 * 60.00095 * 17 15 14 42 42 H 1.08996 * 109.47341 * 59.99269 * 18 17 15 43 43 H 1.08996 * 109.47419 * 180.02562 * 18 17 15 44 44 H 1.09007 * 109.47368 * 179.97438 * 19 18 17 45 45 H 1.09000 * 109.47600 * 299.99792 * 19 18 17 46 46 H 1.09005 * 109.47414 * 59.99431 * 20 19 18 47 47 H 1.08996 * 109.47744 * 180.02562 * 20 19 18 48 48 H 1.07998 * 119.99656 * 359.97438 * 24 23 21 49 49 H 1.08004 * 119.99444 * 180.25379 * 25 24 23 50 50 H 1.07996 * 120.00163 * 179.76670 * 26 25 24 51 51 H 1.08009 * 119.99607 * 179.97438 * 27 26 25 52 52 H 1.07999 * 119.99969 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1031 1.6962 -1.2125 5 1 1.2843 2.7464 -0.0006 6 1 3.1029 1.6964 1.2126 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 6 2.2451 -3.6622 -0.0104 11 6 1.4800 -4.9871 -0.0171 12 6 2.4743 -6.1500 -0.0215 13 6 1.7092 -7.4750 -0.0275 14 8 2.6377 -8.5612 -0.0322 15 6 2.0231 -9.8513 -0.0386 16 1 1.0632 -9.7989 0.4750 17 6 1.8044 -10.3049 -1.4834 18 6 1.1458 -11.6858 -1.4903 19 6 2.0536 -12.6872 -0.7733 20 6 2.2724 -12.2337 0.6715 21 6 2.9313 -10.8524 0.6782 22 1 3.8912 -10.9047 0.1645 23 6 3.1467 -10.4057 2.1012 24 6 2.0662 -10.2599 2.9511 25 6 2.2644 -9.8547 4.2577 26 6 3.5420 -9.5858 4.7118 27 6 4.6219 -9.7261 3.8603 28 6 4.4243 -10.1363 2.5551 29 1 -0.4850 0.8401 -0.0004 30 1 0.6242 -2.5609 0.8844 31 1 0.6244 -2.5529 -0.8956 32 1 2.8718 -3.6005 -0.9002 33 1 2.8717 -3.6084 0.8798 34 1 0.8531 -5.0490 0.8724 35 1 0.8537 -5.0406 -0.9075 36 1 3.1015 -6.0883 -0.9108 37 1 3.1002 -6.0964 0.8692 38 1 1.0821 -7.5365 0.8620 39 1 1.0829 -7.5290 -0.9180 40 1 1.1574 -9.5916 -1.9941 41 1 2.7643 -10.3572 -1.9971 42 1 0.1859 -11.6332 -0.9766 43 1 0.9904 -12.0091 -2.5195 44 1 1.5844 -13.6711 -0.7777 45 1 3.0136 -12.7399 -1.2868 46 1 1.3124 -12.1810 1.1851 47 1 2.9195 -12.9468 1.1822 48 1 1.0676 -10.4657 2.5950 49 1 1.4206 -9.7448 4.9228 50 1 3.6964 -9.2657 5.7316 51 1 5.6201 -9.5156 4.2150 52 1 5.2680 -10.2455 1.8898 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001224377095.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:07:56 Heat of formation + Delta-G solvation = -76.272401 kcal Electronic energy + Delta-G solvation = -26088.376350 eV Core-core repulsion = 22629.408216 eV Total energy + Delta-G solvation = -3458.968134 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.214 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.32453 -38.50444 -36.89587 -35.08567 -32.98536 -32.75457 -31.01676 -30.70887 -29.80756 -28.58919 -26.29104 -23.72513 -23.47447 -22.78366 -22.40754 -21.17400 -20.96475 -19.99170 -19.78228 -17.14919 -16.76032 -16.12022 -15.87296 -15.64766 -15.30992 -14.97854 -14.47442 -14.42201 -14.40946 -13.98195 -13.63866 -13.49548 -13.30163 -13.23624 -12.74425 -12.53568 -12.43821 -12.15208 -11.90263 -11.62905 -11.53656 -11.49988 -11.34010 -11.12496 -11.06337 -10.93460 -10.81514 -10.72102 -10.45802 -10.43176 -10.34713 -10.29800 -9.58953 -9.43466 -9.21240 -9.01070 -8.97772 -8.76281 -8.29760 -5.95212 -3.97161 1.26181 1.30945 3.36346 3.40139 3.43104 3.55912 3.67213 4.25515 4.42762 4.49947 4.64496 4.71498 4.82805 4.87718 4.91606 4.97719 5.00726 5.02782 5.15763 5.16873 5.22311 5.32995 5.37784 5.38451 5.40247 5.49410 5.56402 5.59311 5.64259 5.74941 5.77716 5.80256 5.80787 5.86447 5.91563 5.94207 5.99454 6.07474 6.16122 6.35235 6.36656 6.41695 6.47861 6.51781 6.57876 6.87314 6.90193 7.00740 7.22737 7.30292 7.73797 7.90060 8.06037 8.49395 9.10156 9.66435 11.16214 Molecular weight = 316.21amu Principal moments of inertia in cm(-1) A = 0.014733 B = 0.002322 C = 0.002099 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1900.066955 B =12055.463138 C =13334.984621 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.055 3.945 3 Si 0.892 3.108 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.520 4.520 8 H 0.054 0.946 9 C 0.020 3.980 10 C -0.109 4.109 11 C -0.115 4.115 12 C -0.115 4.115 13 C 0.065 3.935 14 O -0.377 6.377 15 C 0.100 3.900 16 H 0.059 0.941 17 C -0.143 4.143 18 C -0.118 4.118 19 C -0.121 4.121 20 C -0.108 4.108 21 C -0.045 4.045 22 H 0.085 0.915 23 C -0.063 4.063 24 C -0.118 4.118 25 C -0.118 4.118 26 C -0.126 4.126 27 C -0.118 4.118 28 C -0.109 4.109 29 H 0.260 0.740 30 H 0.014 0.986 31 H 0.014 0.986 32 H 0.047 0.953 33 H 0.047 0.953 34 H 0.056 0.944 35 H 0.056 0.944 36 H 0.065 0.935 37 H 0.065 0.935 38 H 0.045 0.955 39 H 0.045 0.955 40 H 0.066 0.934 41 H 0.071 0.929 42 H 0.062 0.938 43 H 0.065 0.935 44 H 0.064 0.936 45 H 0.064 0.936 46 H 0.065 0.935 47 H 0.069 0.931 48 H 0.116 0.884 49 H 0.119 0.881 50 H 0.119 0.881 51 H 0.120 0.880 52 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.311 -29.955 3.142 30.426 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.146 4.146 3 Si 0.720 3.280 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.558 4.558 8 H 0.072 0.928 9 C -0.017 4.017 10 C -0.147 4.147 11 C -0.153 4.153 12 C -0.152 4.152 13 C -0.012 4.012 14 O -0.296 6.296 15 C 0.042 3.958 16 H 0.077 0.923 17 C -0.181 4.181 18 C -0.156 4.156 19 C -0.159 4.159 20 C -0.146 4.146 21 C -0.063 4.063 22 H 0.103 0.897 23 C -0.063 4.063 24 C -0.136 4.136 25 C -0.136 4.136 26 C -0.144 4.144 27 C -0.136 4.136 28 C -0.127 4.127 29 H 0.070 0.930 30 H 0.033 0.967 31 H 0.033 0.967 32 H 0.065 0.935 33 H 0.065 0.935 34 H 0.075 0.925 35 H 0.075 0.925 36 H 0.084 0.916 37 H 0.084 0.916 38 H 0.063 0.937 39 H 0.063 0.937 40 H 0.085 0.915 41 H 0.090 0.910 42 H 0.081 0.919 43 H 0.084 0.916 44 H 0.083 0.917 45 H 0.083 0.917 46 H 0.084 0.916 47 H 0.087 0.913 48 H 0.134 0.866 49 H 0.137 0.863 50 H 0.137 0.863 51 H 0.138 0.862 52 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 4.353 -29.803 3.139 30.283 hybrid contribution 0.104 1.084 0.011 1.089 sum 4.457 -28.719 3.150 29.233 Atomic orbital electron populations 1.69962 1.06053 1.26599 1.51074 1.25037 0.94855 0.99229 0.95441 0.86665 0.79586 0.83176 0.78615 1.20258 1.21312 1.20250 1.21268 0.93016 0.91224 1.50299 0.92791 1.19102 0.94066 0.91446 0.97062 1.21606 0.99027 0.93776 1.00253 1.21580 0.97742 0.94501 1.01465 1.21570 0.98973 0.91864 1.02819 1.22629 0.92066 0.86900 0.99582 1.87924 1.33644 1.13103 1.94944 1.22033 0.95436 0.83675 0.94658 0.92338 1.22065 1.01807 0.96869 0.97316 1.21509 0.98778 0.94558 1.00712 1.21579 1.00207 0.98574 0.95528 1.21590 1.00937 0.95046 0.96984 1.20272 1.00198 0.93855 0.91992 0.89698 1.19687 0.93341 0.98510 0.94795 1.20931 0.98307 1.00568 0.93778 1.21106 0.97132 0.99529 0.95853 1.21124 0.92897 1.00600 0.99793 1.21134 0.98902 0.99599 0.93966 1.21022 0.96518 0.99483 0.95718 0.93022 0.96731 0.96726 0.93460 0.93450 0.92525 0.92504 0.91580 0.91578 0.93702 0.93718 0.91524 0.91023 0.91924 0.91629 0.91711 0.91697 0.91600 0.91271 0.86615 0.86283 0.86320 0.86245 0.86299 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.62 13.29 55.43 0.74 -26.88 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 3 Si 0.89 22.15 29.54 -169.99 -5.02 17.13 16 4 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 5 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 6 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 7 C -0.52 -15.22 9.11 -34.44 -0.31 -15.54 16 8 H 0.05 1.53 7.74 -52.49 -0.41 1.13 16 9 C 0.02 0.54 4.97 -27.88 -0.14 0.40 16 10 C -0.11 -2.34 5.15 -26.74 -0.14 -2.48 16 11 C -0.12 -2.03 5.21 -26.73 -0.14 -2.17 16 12 C -0.11 -1.75 5.58 -26.73 -0.15 -1.90 16 13 C 0.06 0.86 5.75 37.16 0.21 1.08 16 14 O -0.38 -4.97 9.61 -35.23 -0.34 -5.31 16 15 C 0.10 1.02 1.86 -26.73 -0.05 0.97 16 16 H 0.06 0.59 7.02 -51.93 -0.36 0.23 16 17 C -0.14 -1.27 5.54 -26.73 -0.15 -1.42 16 18 C -0.12 -0.82 5.92 -26.73 -0.16 -0.98 16 19 C -0.12 -0.77 5.92 -26.73 -0.16 -0.92 16 20 C -0.11 -0.77 5.02 -26.71 -0.13 -0.90 16 21 C -0.04 -0.41 2.11 -91.75 -0.19 -0.60 16 22 H 0.08 0.79 7.88 -51.93 -0.41 0.39 16 23 C -0.06 -0.65 4.43 -104.63 -0.46 -1.12 16 24 C -0.12 -1.19 8.71 -39.58 -0.34 -1.54 16 25 C -0.12 -1.17 10.05 -39.59 -0.40 -1.57 16 26 C -0.13 -1.25 10.05 -39.58 -0.40 -1.64 16 27 C -0.12 -1.18 10.05 -39.58 -0.40 -1.58 16 28 C -0.11 -1.14 9.67 -39.58 -0.38 -1.53 16 29 H 0.26 7.54 8.31 -40.82 -0.34 7.21 16 30 H 0.01 0.41 8.14 -51.93 -0.42 -0.02 16 31 H 0.01 0.41 8.14 -51.93 -0.42 -0.02 16 32 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 33 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 34 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 35 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 36 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 37 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 38 H 0.04 0.59 8.09 -51.93 -0.42 0.17 16 39 H 0.04 0.56 7.87 -51.93 -0.41 0.15 16 40 H 0.07 0.62 7.87 -51.93 -0.41 0.21 16 41 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 42 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 43 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 44 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 45 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 46 H 0.07 0.46 7.41 -51.93 -0.38 0.07 16 47 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 48 H 0.12 1.02 7.10 -52.49 -0.37 0.64 16 49 H 0.12 0.97 8.06 -52.48 -0.42 0.54 16 50 H 0.12 0.95 8.06 -52.49 -0.42 0.53 16 51 H 0.12 0.97 8.06 -52.48 -0.42 0.55 16 52 H 0.12 1.10 7.95 -52.49 -0.42 0.68 16 LS Contribution 409.71 15.07 6.17 6.17 Total: -1.00 -31.61 409.71 -12.35 -43.96 By element: Atomic # 1 Polarization: 6.73 SS G_CDS: -9.91 Total: -3.18 kcal Atomic # 6 Polarization: -27.91 SS G_CDS: -3.99 Total: -31.90 kcal Atomic # 7 Polarization: -27.62 SS G_CDS: 0.74 Total: -26.88 kcal Atomic # 8 Polarization: -4.97 SS G_CDS: -0.34 Total: -5.31 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -5.02 Total: 17.13 kcal Total LS contribution 6.17 Total: 6.17 kcal Total: -31.61 -12.35 -43.96 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224377095.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.310 kcal (2) G-P(sol) polarization free energy of solvation -31.611 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.921 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.351 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.963 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.272 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds