Wall clock time and date at job start Tue Mar 31 2020 12:07:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48504 * 109.47196 * 239.99713 * 3 2 1 5 5 H 1.48504 * 109.46887 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47679 * 119.99347 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 C 1.52996 * 109.47159 * 179.72211 * 9 7 2 11 11 C 1.52994 * 109.47119 * 180.02562 * 10 9 7 12 12 C 1.53003 * 109.46838 * 180.02562 * 11 10 9 13 13 C 1.53003 * 109.47020 * 179.97438 * 12 11 10 14 14 O 1.42892 * 109.47319 * 179.97438 * 13 12 11 15 15 C 1.42906 * 114.00440 * 180.02562 * 14 13 12 16 16 H 1.09000 * 109.46543 * 330.00214 * 15 14 13 17 17 C 1.53000 * 109.47162 * 89.99678 * 15 14 13 18 18 C 1.52996 * 109.47402 * 180.02562 * 17 15 14 19 19 C 1.53001 * 109.46585 * 299.99951 * 18 17 15 20 20 C 1.52997 * 109.47506 * 60.00143 * 19 18 17 21 21 C 1.53001 * 109.47263 * 209.99897 * 15 14 13 22 22 H 1.08996 * 109.46724 * 299.99575 * 21 15 14 23 23 C 1.50691 * 109.47085 * 60.00053 * 21 15 14 24 24 C 1.38241 * 120.00355 * 59.72418 * 23 21 15 25 25 C 1.38232 * 119.99705 * 179.76731 * 24 23 21 26 26 C 1.38231 * 120.00546 * 0.48252 * 25 24 23 27 27 C 1.38238 * 119.99486 * 359.79500 * 26 25 24 28 28 C 1.38234 * 120.00374 * 359.95296 * 27 26 25 29 29 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 30 30 H 1.09004 * 109.46965 * 299.72070 * 9 7 2 31 31 H 1.08994 * 109.46990 * 59.71924 * 9 7 2 32 32 H 1.09004 * 109.47066 * 299.99797 * 10 9 7 33 33 H 1.09000 * 109.47234 * 59.99288 * 10 9 7 34 34 H 1.08998 * 109.46640 * 299.99314 * 11 10 9 35 35 H 1.08994 * 109.47663 * 59.99852 * 11 10 9 36 36 H 1.08998 * 109.46943 * 299.99126 * 12 11 10 37 37 H 1.09002 * 109.47396 * 60.00115 * 12 11 10 38 38 H 1.09004 * 109.47038 * 299.99988 * 13 12 11 39 39 H 1.09000 * 109.47414 * 59.99572 * 13 12 11 40 40 H 1.09003 * 109.47158 * 300.00547 * 17 15 14 41 41 H 1.09005 * 109.47225 * 60.00095 * 17 15 14 42 42 H 1.08996 * 109.47341 * 59.99269 * 18 17 15 43 43 H 1.08996 * 109.47419 * 180.02562 * 18 17 15 44 44 H 1.09007 * 109.47368 * 179.97438 * 19 18 17 45 45 H 1.09000 * 109.47600 * 299.99792 * 19 18 17 46 46 H 1.09005 * 109.47414 * 59.99431 * 20 19 18 47 47 H 1.08996 * 109.47744 * 180.02562 * 20 19 18 48 48 H 1.07998 * 119.99656 * 359.97438 * 24 23 21 49 49 H 1.08004 * 119.99444 * 180.25379 * 25 24 23 50 50 H 1.07996 * 120.00163 * 179.76670 * 26 25 24 51 51 H 1.08009 * 119.99607 * 179.97438 * 27 26 25 52 52 H 1.07999 * 119.99969 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1031 1.6962 -1.2125 5 1 1.2843 2.7464 -0.0006 6 1 3.1029 1.6964 1.2126 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 6 2.2451 -3.6622 -0.0104 11 6 1.4800 -4.9871 -0.0171 12 6 2.4743 -6.1500 -0.0215 13 6 1.7092 -7.4750 -0.0275 14 8 2.6377 -8.5612 -0.0322 15 6 2.0231 -9.8513 -0.0386 16 1 1.0632 -9.7989 0.4750 17 6 1.8044 -10.3049 -1.4834 18 6 1.1458 -11.6858 -1.4903 19 6 2.0536 -12.6872 -0.7733 20 6 2.2724 -12.2337 0.6715 21 6 2.9313 -10.8524 0.6782 22 1 3.8912 -10.9047 0.1645 23 6 3.1467 -10.4057 2.1012 24 6 2.0662 -10.2599 2.9511 25 6 2.2644 -9.8547 4.2577 26 6 3.5420 -9.5858 4.7118 27 6 4.6219 -9.7261 3.8603 28 6 4.4243 -10.1363 2.5551 29 1 -0.4850 0.8401 -0.0004 30 1 0.6242 -2.5609 0.8844 31 1 0.6244 -2.5529 -0.8956 32 1 2.8718 -3.6005 -0.9002 33 1 2.8717 -3.6084 0.8798 34 1 0.8531 -5.0490 0.8724 35 1 0.8537 -5.0406 -0.9075 36 1 3.1015 -6.0883 -0.9108 37 1 3.1002 -6.0964 0.8692 38 1 1.0821 -7.5365 0.8620 39 1 1.0829 -7.5290 -0.9180 40 1 1.1574 -9.5916 -1.9941 41 1 2.7643 -10.3572 -1.9971 42 1 0.1859 -11.6332 -0.9766 43 1 0.9904 -12.0091 -2.5195 44 1 1.5844 -13.6711 -0.7777 45 1 3.0136 -12.7399 -1.2868 46 1 1.3124 -12.1810 1.1851 47 1 2.9195 -12.9468 1.1822 48 1 1.0676 -10.4657 2.5950 49 1 1.4206 -9.7448 4.9228 50 1 3.6964 -9.2657 5.7316 51 1 5.6201 -9.5156 4.2150 52 1 5.2680 -10.2455 1.8898 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001224377095.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:07:55 Heat of formation + Delta-G solvation = -89.262304 kcal Electronic energy + Delta-G solvation = -26088.939634 eV Core-core repulsion = 22629.408216 eV Total energy + Delta-G solvation = -3459.531419 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.214 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.06493 -39.30602 -37.83565 -36.65004 -34.79523 -33.60858 -32.20049 -31.75166 -30.73696 -29.40945 -27.99644 -25.18380 -24.38767 -23.51269 -23.20367 -22.44661 -21.81910 -21.70782 -20.48543 -18.45351 -17.86895 -17.58418 -17.00708 -16.55939 -16.41175 -16.11093 -15.80257 -15.57578 -15.08185 -14.72459 -14.60006 -14.54782 -14.29635 -14.18663 -14.02252 -13.71517 -13.58308 -13.39021 -13.19128 -12.99226 -12.76264 -12.65596 -12.36086 -12.27712 -12.20989 -12.13893 -11.92552 -11.81711 -11.75385 -11.47452 -11.41332 -11.34135 -11.30885 -11.14098 -10.96786 -10.55612 -10.33037 -9.76908 -9.51292 -8.20684 -6.32102 0.51154 0.54966 1.38722 1.42296 1.50268 2.40288 2.64461 2.92083 3.11834 3.57523 3.74353 3.97857 3.99196 4.07267 4.11820 4.16708 4.18566 4.22424 4.29802 4.31191 4.32797 4.39340 4.41128 4.50887 4.52718 4.56400 4.67554 4.71553 4.74063 4.86084 4.90231 4.91984 4.98358 5.03030 5.09674 5.16135 5.17637 5.20759 5.22845 5.28637 5.29043 5.30458 5.35900 5.37846 5.49302 5.54042 5.62591 5.67104 5.77008 5.77242 5.85903 6.17255 6.25458 6.36562 6.84849 7.36994 8.91055 Molecular weight = 316.21amu Principal moments of inertia in cm(-1) A = 0.014733 B = 0.002322 C = 0.002099 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1900.066955 B =12055.463138 C =13334.984621 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.002 4.002 3 Si 0.966 3.034 4 H -0.266 1.266 5 H -0.281 1.281 6 H -0.267 1.267 7 C -0.547 4.547 8 H 0.058 0.942 9 C 0.023 3.977 10 C -0.099 4.099 11 C -0.106 4.106 12 C -0.105 4.105 13 C 0.071 3.929 14 O -0.393 6.393 15 C 0.097 3.903 16 H 0.060 0.940 17 C -0.141 4.141 18 C -0.115 4.115 19 C -0.118 4.118 20 C -0.103 4.103 21 C -0.040 4.040 22 H 0.079 0.921 23 C -0.073 4.073 24 C -0.128 4.128 25 C -0.129 4.129 26 C -0.138 4.138 27 C -0.129 4.129 28 C -0.127 4.127 29 H 0.264 0.736 30 H -0.010 1.010 31 H -0.009 1.009 32 H 0.049 0.951 33 H 0.047 0.953 34 H 0.056 0.944 35 H 0.059 0.941 36 H 0.066 0.934 37 H 0.060 0.940 38 H 0.047 0.953 39 H 0.053 0.947 40 H 0.060 0.940 41 H 0.065 0.935 42 H 0.066 0.934 43 H 0.074 0.926 44 H 0.079 0.921 45 H 0.065 0.935 46 H 0.069 0.931 47 H 0.073 0.927 48 H 0.126 0.874 49 H 0.134 0.866 50 H 0.134 0.866 51 H 0.134 0.866 52 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.919 -30.776 3.102 31.320 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.200 4.200 3 Si 0.790 3.210 4 H -0.191 1.191 5 H -0.206 1.206 6 H -0.192 1.192 7 C -0.585 4.585 8 H 0.077 0.923 9 C -0.014 4.014 10 C -0.136 4.136 11 C -0.143 4.143 12 C -0.143 4.143 13 C -0.006 4.006 14 O -0.313 6.313 15 C 0.039 3.961 16 H 0.078 0.922 17 C -0.178 4.178 18 C -0.152 4.152 19 C -0.156 4.156 20 C -0.141 4.141 21 C -0.059 4.059 22 H 0.097 0.903 23 C -0.073 4.073 24 C -0.146 4.146 25 C -0.147 4.147 26 C -0.156 4.156 27 C -0.146 4.146 28 C -0.145 4.145 29 H 0.073 0.927 30 H 0.009 0.991 31 H 0.010 0.990 32 H 0.068 0.932 33 H 0.066 0.934 34 H 0.074 0.926 35 H 0.078 0.922 36 H 0.085 0.915 37 H 0.079 0.921 38 H 0.065 0.935 39 H 0.071 0.929 40 H 0.079 0.921 41 H 0.084 0.916 42 H 0.085 0.915 43 H 0.093 0.907 44 H 0.098 0.902 45 H 0.083 0.917 46 H 0.087 0.913 47 H 0.092 0.908 48 H 0.144 0.856 49 H 0.152 0.848 50 H 0.152 0.848 51 H 0.152 0.848 52 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 4.969 -30.646 3.099 31.200 hybrid contribution -0.101 1.322 0.040 1.327 sum 4.868 -29.323 3.138 29.890 Atomic orbital electron populations 1.70095 1.07812 1.27864 1.51656 1.26018 0.95829 1.03449 0.94686 0.85492 0.78298 0.77987 0.79226 1.19122 1.20632 1.19158 1.21721 0.93536 0.92607 1.50639 0.92346 1.19028 0.94493 0.93204 0.94707 1.21438 0.98018 0.93807 1.00367 1.21426 0.97849 0.93438 1.01633 1.21393 0.98271 0.92032 1.02562 1.22463 0.91752 0.86243 1.00113 1.87890 1.34205 1.14101 1.95122 1.22216 0.95602 0.82569 0.95689 0.92165 1.22043 1.01611 0.97996 0.96191 1.21503 0.98830 0.93389 1.01503 1.21571 1.00255 0.99033 0.94715 1.21567 1.00946 0.93791 0.97749 1.20266 0.99906 0.94594 0.91103 0.90272 1.19886 0.93435 0.98530 0.95435 1.21130 0.98797 1.00718 0.93988 1.21396 0.97799 0.99303 0.96192 1.21408 0.92942 1.00584 1.00664 1.21400 0.99824 0.99438 0.93979 1.21244 0.96986 1.00031 0.96243 0.92720 0.99141 0.99019 0.93173 0.93388 0.92551 0.92204 0.91522 0.92126 0.93503 0.92860 0.92129 0.91575 0.91521 0.90705 0.90216 0.91659 0.91259 0.90821 0.85605 0.84800 0.84769 0.84828 0.85758 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.21 13.29 21.45 0.28 -57.93 16 2 C 0.00 -0.13 5.46 84.66 0.46 0.33 16 3 Si 0.97 45.26 29.54 68.60 2.03 47.28 16 4 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 5 H -0.28 -12.78 7.11 99.48 0.71 -12.08 16 6 H -0.27 -11.99 7.11 99.48 0.71 -11.29 16 7 C -0.55 -32.35 9.11 25.60 0.23 -32.11 16 8 H 0.06 3.31 7.74 -2.91 -0.02 3.29 16 9 C 0.02 1.25 4.97 29.85 0.15 1.40 16 10 C -0.10 -4.26 5.15 30.59 0.16 -4.10 16 11 C -0.11 -3.70 5.21 30.59 0.16 -3.54 16 12 C -0.10 -3.12 5.58 30.60 0.17 -2.95 16 13 C 0.07 1.82 5.75 71.98 0.41 2.24 16 14 O -0.39 -10.08 9.61 -148.98 -1.43 -11.51 16 15 C 0.10 1.88 1.86 30.59 0.06 1.93 16 16 H 0.06 1.14 7.02 -2.39 -0.02 1.13 16 17 C -0.14 -2.34 5.54 30.59 0.17 -2.17 16 18 C -0.11 -1.38 5.92 30.59 0.18 -1.19 16 19 C -0.12 -1.25 5.92 30.59 0.18 -1.07 16 20 C -0.10 -1.30 5.02 30.61 0.15 -1.14 16 21 C -0.04 -0.69 2.11 -11.53 -0.02 -0.72 16 22 H 0.08 1.44 7.88 -2.39 -0.02 1.42 16 23 C -0.07 -1.46 4.43 -19.87 -0.09 -1.55 16 24 C -0.13 -2.49 8.71 22.27 0.19 -2.30 16 25 C -0.13 -2.45 10.05 22.27 0.22 -2.23 16 26 C -0.14 -2.62 10.05 22.27 0.22 -2.40 16 27 C -0.13 -2.50 10.05 22.27 0.22 -2.28 16 28 C -0.13 -2.61 9.67 22.27 0.22 -2.40 16 29 H 0.26 15.41 8.31 -92.70 -0.77 14.64 16 30 H -0.01 -0.58 8.14 -2.38 -0.02 -0.60 16 31 H -0.01 -0.50 8.14 -2.39 -0.02 -0.52 16 32 H 0.05 2.11 8.14 -2.38 -0.02 2.09 16 33 H 0.05 2.04 8.14 -2.39 -0.02 2.02 16 34 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 35 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16 36 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 37 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 38 H 0.05 1.18 8.09 -2.38 -0.02 1.16 16 39 H 0.05 1.28 7.87 -2.39 -0.02 1.26 16 40 H 0.06 1.07 7.87 -2.39 -0.02 1.05 16 41 H 0.07 1.17 8.14 -2.38 -0.02 1.15 16 42 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 43 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 44 H 0.08 0.64 8.14 -2.38 -0.02 0.62 16 45 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 46 H 0.07 0.83 7.41 -2.38 -0.02 0.82 16 47 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 48 H 0.13 2.07 7.10 -2.91 -0.02 2.05 16 49 H 0.13 2.02 8.06 -2.91 -0.02 2.00 16 50 H 0.13 2.00 8.06 -2.91 -0.02 1.98 16 51 H 0.13 2.08 8.06 -2.91 -0.02 2.05 16 52 H 0.12 2.28 7.95 -2.91 -0.02 2.26 16 Total: -1.00 -67.49 409.71 5.17 -62.32 By element: Atomic # 1 Polarization: 15.24 SS G_CDS: 0.83 Total: 16.07 kcal Atomic # 6 Polarization: -59.69 SS G_CDS: 3.46 Total: -56.24 kcal Atomic # 7 Polarization: -58.21 SS G_CDS: 0.28 Total: -57.93 kcal Atomic # 8 Polarization: -10.08 SS G_CDS: -1.43 Total: -11.51 kcal Atomic # 14 Polarization: 45.26 SS G_CDS: 2.03 Total: 47.28 kcal Total: -67.49 5.17 -62.32 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224377095.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.944 kcal (2) G-P(sol) polarization free energy of solvation -67.486 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.429 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.167 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.319 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.262 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds