Wall clock time and date at job start Tue Mar 31 2020 12:04:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46896 * 1 3 3 C 1.46955 * 110.99809 * 2 1 4 4 C 1.53049 * 109.36553 * 183.19069 * 3 2 1 5 5 N 1.46965 * 109.36198 * 301.59715 * 4 3 2 6 6 C 1.39005 * 110.99815 * 183.18539 * 5 4 3 7 7 C 1.39133 * 119.70141 * 179.97438 * 6 5 4 8 8 C 1.38302 * 119.09661 * 179.97438 * 7 6 5 9 9 C 1.38884 * 118.50225 * 0.02562 * 8 7 6 10 10 C 1.50700 * 120.33302 * 180.02562 * 9 8 7 11 11 N 1.46896 * 109.47335 * 90.00054 * 10 9 8 12 12 C 1.47482 * 111.00033 * 265.97090 * 11 10 9 13 13 C 1.53510 * 87.93322 * 221.29631 * 12 11 10 14 14 C 1.50700 * 114.34703 * 139.68509 * 13 12 11 15 15 H 1.08004 * 119.99971 * 266.07880 * 14 13 12 16 16 C 1.37872 * 120.00172 * 86.07279 * 14 13 12 17 17 N 1.31518 * 120.00154 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 120.00231 * 180.02562 * 16 14 13 19 19 H 1.48506 * 109.46731 * 359.97438 * 18 16 14 20 20 H 1.48498 * 109.47292 * 120.00091 * 18 16 14 21 21 H 1.48504 * 109.46837 * 240.00248 * 18 16 14 22 22 C 1.47484 * 111.00035 * 170.00145 * 11 10 9 23 23 C 1.38017 * 119.33263 * 359.97438 * 9 8 7 24 24 N 1.31976 * 120.85385 * 359.72909 * 23 9 8 25 25 C 1.46955 * 110.87982 * 59.32126 * 5 4 3 26 26 C 1.46955 * 111.00246 * 123.79810 * 2 1 3 27 27 H 1.09004 * 109.47571 * 60.00081 * 1 2 3 28 28 H 1.09000 * 109.47011 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47347 * 299.99977 * 1 2 3 30 30 H 1.08994 * 109.48889 * 63.22163 * 3 2 1 31 31 H 1.08997 * 109.50468 * 303.16162 * 3 2 1 32 32 H 1.08997 * 109.49399 * 181.63419 * 4 3 2 33 33 H 1.09003 * 109.49204 * 61.55798 * 4 3 2 34 34 H 1.08004 * 120.45617 * 359.97438 * 7 6 5 35 35 H 1.08000 * 120.75089 * 180.02562 * 8 7 6 36 36 H 1.09000 * 109.47442 * 210.00102 * 10 9 8 37 37 H 1.08999 * 109.47458 * 329.99706 * 10 9 8 38 38 H 1.08997 * 113.47417 * 336.06056 * 12 11 10 39 39 H 1.09000 * 113.47568 * 106.53006 * 12 11 10 40 40 H 1.09004 * 114.16642 * 272.37508 * 13 12 11 41 41 H 0.96995 * 120.00191 * 179.97438 * 17 16 14 42 42 H 1.09005 * 113.47166 * 253.46914 * 22 11 10 43 43 H 1.08992 * 113.47535 * 23.93549 * 22 11 10 44 44 H 1.08001 * 119.57348 * 179.97438 * 23 9 8 45 45 H 1.09003 * 109.49158 * 60.64578 * 25 5 4 46 46 H 1.09002 * 109.48895 * 180.71076 * 25 5 4 47 47 H 1.08999 * 109.48866 * 296.78402 * 26 2 1 48 48 H 1.09002 * 109.48661 * 56.82117 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9956 1.3720 0.0000 4 6 3.5233 1.3292 -0.0804 5 7 4.0500 0.5659 1.0598 6 6 5.4401 0.5660 1.0597 7 6 6.1295 -0.1058 2.0643 8 6 7.5125 -0.0982 2.0518 9 6 8.1622 0.5842 1.0314 10 6 9.6679 0.6188 0.9775 11 7 10.1560 -0.5208 0.1896 12 6 10.4812 -1.6653 1.0610 13 6 11.7302 -1.8956 0.1988 14 6 12.9637 -2.2699 0.9795 15 1 13.6616 -1.5048 1.2860 16 6 13.2012 -3.5891 1.3025 17 7 12.3516 -4.5209 0.9288 18 14 14.7298 -4.0530 2.2708 19 1 15.5182 -2.8299 2.5671 20 1 14.3304 -4.7056 3.5435 21 1 15.5563 -4.9924 1.4708 22 6 11.5991 -0.3930 -0.0867 23 6 7.4151 1.2293 0.0668 24 7 6.0961 1.2003 0.1006 25 6 3.5234 -0.8060 1.0598 26 6 1.9957 -0.7632 1.1401 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 1.6937 1.8773 0.9173 31 1 1.6013 1.9131 -0.8601 32 1 3.9177 2.3449 -0.0513 33 1 3.8253 0.8479 -1.0106 34 1 5.5921 -0.6263 2.8433 35 1 8.0745 -0.6112 2.8181 36 1 9.9935 1.5488 0.5114 37 1 10.0692 0.5596 1.9892 38 1 10.7091 -1.3784 2.0876 39 1 9.7562 -2.4769 1.0005 40 1 11.5615 -2.5315 -0.6703 41 1 12.5188 -5.4489 1.1557 42 1 11.8213 -0.1263 -1.1200 43 1 12.1252 0.2334 0.6335 44 1 7.9164 1.7614 -0.7282 45 1 3.8253 -1.3115 0.1424 46 1 3.9178 -1.3469 1.9200 47 1 1.6937 -0.2820 2.0704 48 1 1.6010 -1.7788 1.1112 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001232361065.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:04:18 Heat of formation + Delta-G solvation = 96.878253 kcal Electronic energy + Delta-G solvation = -25942.061644 eV Core-core repulsion = 22419.354293 eV Total energy + Delta-G solvation = -3522.707351 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.196 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.77656 -39.27807 -38.54679 -35.77120 -33.14055 -32.43846 -31.61499 -31.04190 -29.18459 -27.55156 -25.46341 -24.88321 -24.47860 -24.12387 -22.74383 -22.53264 -21.00552 -20.06332 -18.64512 -17.70882 -16.74289 -16.51367 -15.60715 -15.44368 -15.36074 -15.11839 -14.93257 -14.84650 -14.44981 -14.33422 -14.01972 -13.98517 -13.25163 -13.05010 -12.94802 -12.75365 -12.52454 -12.24173 -12.07138 -11.92172 -11.59421 -11.53760 -11.25167 -11.20460 -11.09459 -11.00121 -10.59938 -10.33422 -9.93937 -9.84869 -9.65207 -9.32840 -9.20094 -8.96800 -8.70881 -8.47700 -8.05973 -7.93438 -6.08264 -4.13023 1.25961 1.45138 3.25485 3.34060 3.35876 3.37435 3.57196 3.94657 4.37743 4.42670 4.59574 4.68577 4.83031 4.91638 4.99876 5.01713 5.09447 5.15647 5.18692 5.21200 5.22046 5.23700 5.27367 5.33535 5.46781 5.50484 5.56077 5.63589 5.71655 5.83885 5.91841 5.92180 6.07329 6.13523 6.27876 6.38867 6.44008 6.55814 6.59251 6.65030 6.66894 6.69621 6.73038 7.10753 7.14500 7.17705 7.70055 7.87791 8.03156 8.09956 8.34190 8.90751 9.52271 11.01259 Molecular weight = 316.20amu Principal moments of inertia in cm(-1) A = 0.025732 B = 0.002321 C = 0.002212 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1087.892487 B =12062.016440 C =12657.791783 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.547 5.547 3 C 0.054 3.946 4 C 0.070 3.930 5 N -0.480 5.480 6 C 0.298 3.702 7 C -0.183 4.183 8 C -0.046 4.046 9 C -0.131 4.131 10 C 0.062 3.938 11 N -0.479 5.479 12 C 0.006 3.994 13 C 0.041 3.959 14 C -0.516 4.516 15 H 0.058 0.942 16 C 0.066 3.934 17 N -0.886 5.886 18 Si 0.891 3.109 19 H -0.272 1.272 20 H -0.284 1.284 21 H -0.283 1.283 22 C -0.005 4.005 23 C 0.137 3.863 24 N -0.519 5.519 25 C 0.060 3.940 26 C 0.057 3.943 27 H 0.069 0.931 28 H 0.068 0.932 29 H 0.026 0.974 30 H 0.041 0.959 31 H 0.083 0.917 32 H 0.089 0.911 33 H 0.059 0.941 34 H 0.131 0.869 35 H 0.133 0.867 36 H 0.073 0.927 37 H 0.050 0.950 38 H 0.053 0.947 39 H 0.062 0.938 40 H 0.064 0.936 41 H 0.261 0.739 42 H 0.063 0.937 43 H 0.055 0.945 44 H 0.154 0.846 45 H 0.055 0.945 46 H 0.088 0.912 47 H 0.044 0.956 48 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.829 10.533 1.249 23.374 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.272 5.272 3 C -0.075 4.075 4 C -0.057 4.057 5 N -0.198 5.198 6 C 0.066 3.934 7 C -0.206 4.206 8 C -0.072 4.072 9 C -0.135 4.135 10 C -0.067 4.067 11 N -0.202 5.202 12 C -0.123 4.123 13 C 0.022 3.978 14 C -0.554 4.554 15 H 0.076 0.924 16 C -0.137 4.137 17 N -0.523 5.523 18 Si 0.718 3.282 19 H -0.197 1.197 20 H -0.210 1.210 21 H -0.209 1.209 22 C -0.134 4.134 23 C -0.021 4.021 24 N -0.233 5.233 25 C -0.066 4.066 26 C -0.071 4.071 27 H 0.088 0.912 28 H 0.087 0.913 29 H 0.044 0.956 30 H 0.060 0.940 31 H 0.101 0.899 32 H 0.107 0.893 33 H 0.077 0.923 34 H 0.149 0.851 35 H 0.151 0.849 36 H 0.091 0.909 37 H 0.068 0.932 38 H 0.071 0.929 39 H 0.080 0.920 40 H 0.082 0.918 41 H 0.071 0.929 42 H 0.081 0.919 43 H 0.073 0.927 44 H 0.171 0.829 45 H 0.074 0.926 46 H 0.107 0.893 47 H 0.063 0.937 48 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -21.916 10.719 0.061 24.397 hybrid contribution 1.678 -0.525 2.127 2.759 sum -20.238 10.194 2.188 22.766 Atomic orbital electron populations 1.22344 0.86980 1.02172 1.00739 1.62160 1.07990 1.14174 1.42837 1.22278 0.94832 0.89158 1.01194 1.22012 0.92659 0.99365 0.91649 1.59391 1.03393 1.14426 1.42612 1.19662 0.89043 0.93787 0.90874 1.21450 0.94540 1.04083 1.00496 1.21388 0.93617 0.94917 0.97324 1.20689 0.97101 0.99419 0.96244 1.21506 0.90131 0.97001 0.98063 1.68938 1.16454 1.03809 1.30962 1.24109 1.00066 0.92436 0.95692 1.20091 0.92656 0.89391 0.95641 1.21068 1.06779 0.92660 1.34893 0.92351 1.25029 0.96377 0.96568 0.95705 1.69979 1.35830 1.00804 1.45687 0.86564 0.83223 0.78572 0.79807 1.19707 1.20999 1.20899 1.24022 0.87816 1.01780 0.99785 1.22329 0.87995 0.95439 0.96315 1.67558 1.10541 1.21783 1.23406 1.22330 0.94417 0.87316 1.02559 1.22188 0.93911 0.98923 0.92083 0.91234 0.91275 0.95585 0.94041 0.89892 0.89257 0.92285 0.85104 0.84894 0.90860 0.93150 0.92867 0.91971 0.91834 0.92903 0.91881 0.92721 0.82915 0.92633 0.89323 0.93741 0.89685 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.18 9.60 60.06 0.58 0.75 16 2 N -0.55 -4.98 4.97 -242.76 -1.21 -6.19 16 3 C 0.05 0.49 5.62 -3.77 -0.02 0.47 16 4 C 0.07 0.79 4.79 -3.76 -0.02 0.78 16 5 N -0.48 -5.79 4.73 -173.04 -0.82 -6.61 16 6 C 0.30 4.18 6.40 -155.03 -0.99 3.19 16 7 C -0.18 -2.46 9.21 -39.23 -0.36 -2.82 16 8 C -0.05 -0.66 9.85 -39.32 -0.39 -1.05 16 9 C -0.13 -2.01 5.48 -104.46 -0.57 -2.58 16 10 C 0.06 1.00 4.96 -4.98 -0.02 0.98 16 11 N -0.48 -9.41 6.32 -246.09 -1.55 -10.97 16 12 C 0.01 0.13 7.28 -7.55 -0.05 0.07 16 13 C 0.04 1.02 3.76 -91.24 -0.34 0.67 16 14 C -0.52 -13.80 8.83 -34.44 -0.30 -14.10 16 15 H 0.06 1.53 7.81 -52.48 -0.41 1.12 16 16 C 0.07 1.80 5.46 -17.82 -0.10 1.70 16 17 N -0.89 -25.32 13.26 55.43 0.74 -24.58 16 18 Si 0.89 20.78 29.54 -169.99 -5.02 15.76 16 19 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 20 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 21 H -0.28 -6.59 7.11 56.52 0.40 -6.18 16 22 C -0.01 -0.11 7.25 -7.54 -0.05 -0.17 16 23 C 0.14 2.03 10.85 -17.57 -0.19 1.84 16 24 N -0.52 -7.80 8.71 -12.44 -0.11 -7.91 16 25 C 0.06 0.63 5.37 -3.77 -0.02 0.61 16 26 C 0.06 0.50 5.62 -3.77 -0.02 0.47 16 27 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.07 0.42 8.13 -51.93 -0.42 -0.01 16 29 H 0.03 0.17 8.14 -51.93 -0.42 -0.26 16 30 H 0.04 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.08 0.65 8.14 -51.93 -0.42 0.22 16 32 H 0.09 1.04 7.83 -51.93 -0.41 0.63 16 33 H 0.06 0.76 8.05 -51.93 -0.42 0.34 16 34 H 0.13 1.47 7.18 -52.48 -0.38 1.09 16 35 H 0.13 1.82 8.06 -52.49 -0.42 1.39 16 36 H 0.07 1.06 8.03 -51.93 -0.42 0.65 16 37 H 0.05 0.81 7.25 -51.93 -0.38 0.44 16 38 H 0.05 1.18 7.38 -51.93 -0.38 0.79 16 39 H 0.06 1.47 8.14 -51.93 -0.42 1.05 16 40 H 0.06 1.74 8.11 -51.93 -0.42 1.31 16 41 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 42 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 43 H 0.05 1.08 7.87 -51.93 -0.41 0.67 16 44 H 0.15 2.01 8.06 -52.49 -0.42 1.59 16 45 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 46 H 0.09 0.83 6.79 -51.93 -0.35 0.48 16 47 H 0.04 0.38 8.14 -51.93 -0.42 -0.04 16 48 H 0.08 0.62 8.13 -51.93 -0.42 0.20 16 LS Contribution 381.29 15.07 5.75 5.75 Total: -1.00 -29.44 381.29 -13.29 -42.74 By element: Atomic # 1 Polarization: 9.38 SS G_CDS: -8.18 Total: 1.20 kcal Atomic # 6 Polarization: -6.30 SS G_CDS: -2.89 Total: -9.19 kcal Atomic # 7 Polarization: -53.31 SS G_CDS: -2.95 Total: -56.26 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -5.02 Total: 15.76 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -29.44 -13.29 -42.74 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001232361065.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 139.614 kcal (2) G-P(sol) polarization free energy of solvation -29.445 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 110.170 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -13.292 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.736 kcal (6) G-S(sol) free energy of system = (1) + (5) 96.878 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds