Wall clock time and date at job start Tue Mar 31 2020 12:04:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46896 * 1 3 3 C 1.46955 * 110.99809 * 2 1 4 4 C 1.53049 * 109.36553 * 183.19069 * 3 2 1 5 5 N 1.46965 * 109.36198 * 301.59715 * 4 3 2 6 6 C 1.39005 * 110.99815 * 183.18539 * 5 4 3 7 7 C 1.39133 * 119.70141 * 179.97438 * 6 5 4 8 8 C 1.38302 * 119.09661 * 179.97438 * 7 6 5 9 9 C 1.38884 * 118.50225 * 0.02562 * 8 7 6 10 10 C 1.50700 * 120.33302 * 180.02562 * 9 8 7 11 11 N 1.46896 * 109.47335 * 90.00054 * 10 9 8 12 12 C 1.47482 * 111.00033 * 265.97090 * 11 10 9 13 13 C 1.53510 * 87.93322 * 221.29631 * 12 11 10 14 14 C 1.50700 * 114.34703 * 139.68509 * 13 12 11 15 15 H 1.08004 * 119.99971 * 266.07880 * 14 13 12 16 16 C 1.37872 * 120.00172 * 86.07279 * 14 13 12 17 17 N 1.31518 * 120.00154 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 120.00231 * 180.02562 * 16 14 13 19 19 H 1.48506 * 109.46731 * 359.97438 * 18 16 14 20 20 H 1.48498 * 109.47292 * 120.00091 * 18 16 14 21 21 H 1.48504 * 109.46837 * 240.00248 * 18 16 14 22 22 C 1.47484 * 111.00035 * 170.00145 * 11 10 9 23 23 C 1.38017 * 119.33263 * 359.97438 * 9 8 7 24 24 N 1.31976 * 120.85385 * 359.72909 * 23 9 8 25 25 C 1.46955 * 110.87982 * 59.32126 * 5 4 3 26 26 C 1.46955 * 111.00246 * 123.79810 * 2 1 3 27 27 H 1.09004 * 109.47571 * 60.00081 * 1 2 3 28 28 H 1.09000 * 109.47011 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47347 * 299.99977 * 1 2 3 30 30 H 1.08994 * 109.48889 * 63.22163 * 3 2 1 31 31 H 1.08997 * 109.50468 * 303.16162 * 3 2 1 32 32 H 1.08997 * 109.49399 * 181.63419 * 4 3 2 33 33 H 1.09003 * 109.49204 * 61.55798 * 4 3 2 34 34 H 1.08004 * 120.45617 * 359.97438 * 7 6 5 35 35 H 1.08000 * 120.75089 * 180.02562 * 8 7 6 36 36 H 1.09000 * 109.47442 * 210.00102 * 10 9 8 37 37 H 1.08999 * 109.47458 * 329.99706 * 10 9 8 38 38 H 1.08997 * 113.47417 * 336.06056 * 12 11 10 39 39 H 1.09000 * 113.47568 * 106.53006 * 12 11 10 40 40 H 1.09004 * 114.16642 * 272.37508 * 13 12 11 41 41 H 0.96995 * 120.00191 * 179.97438 * 17 16 14 42 42 H 1.09005 * 113.47166 * 253.46914 * 22 11 10 43 43 H 1.08992 * 113.47535 * 23.93549 * 22 11 10 44 44 H 1.08001 * 119.57348 * 179.97438 * 23 9 8 45 45 H 1.09003 * 109.49158 * 60.64578 * 25 5 4 46 46 H 1.09002 * 109.48895 * 180.71076 * 25 5 4 47 47 H 1.08999 * 109.48866 * 296.78402 * 26 2 1 48 48 H 1.09002 * 109.48661 * 56.82117 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9956 1.3720 0.0000 4 6 3.5233 1.3292 -0.0804 5 7 4.0500 0.5659 1.0598 6 6 5.4401 0.5660 1.0597 7 6 6.1295 -0.1058 2.0643 8 6 7.5125 -0.0982 2.0518 9 6 8.1622 0.5842 1.0314 10 6 9.6679 0.6188 0.9775 11 7 10.1560 -0.5208 0.1896 12 6 10.4812 -1.6653 1.0610 13 6 11.7302 -1.8956 0.1988 14 6 12.9637 -2.2699 0.9795 15 1 13.6616 -1.5048 1.2860 16 6 13.2012 -3.5891 1.3025 17 7 12.3516 -4.5209 0.9288 18 14 14.7298 -4.0530 2.2708 19 1 15.5182 -2.8299 2.5671 20 1 14.3304 -4.7056 3.5435 21 1 15.5563 -4.9924 1.4708 22 6 11.5991 -0.3930 -0.0867 23 6 7.4151 1.2293 0.0668 24 7 6.0961 1.2003 0.1006 25 6 3.5234 -0.8060 1.0598 26 6 1.9957 -0.7632 1.1401 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 1.6937 1.8773 0.9173 31 1 1.6013 1.9131 -0.8601 32 1 3.9177 2.3449 -0.0513 33 1 3.8253 0.8479 -1.0106 34 1 5.5921 -0.6263 2.8433 35 1 8.0745 -0.6112 2.8181 36 1 9.9935 1.5488 0.5114 37 1 10.0692 0.5596 1.9892 38 1 10.7091 -1.3784 2.0876 39 1 9.7562 -2.4769 1.0005 40 1 11.5615 -2.5315 -0.6703 41 1 12.5188 -5.4489 1.1557 42 1 11.8213 -0.1263 -1.1200 43 1 12.1252 0.2334 0.6335 44 1 7.9164 1.7614 -0.7282 45 1 3.8253 -1.3115 0.1424 46 1 3.9178 -1.3469 1.9200 47 1 1.6937 -0.2820 2.0704 48 1 1.6010 -1.7788 1.1112 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001232361065.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:04:17 Heat of formation + Delta-G solvation = 76.850281 kcal Electronic energy + Delta-G solvation = -25942.930122 eV Core-core repulsion = 22419.354293 eV Total energy + Delta-G solvation = -3523.575829 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.196 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.82586 -40.68020 -39.67197 -36.66348 -34.85913 -33.82166 -32.78763 -31.90281 -30.40280 -28.79573 -26.99727 -26.54971 -25.45357 -25.09991 -24.00841 -23.59799 -22.22346 -20.90435 -20.45707 -18.72221 -18.60494 -17.65718 -16.79443 -16.63169 -16.43745 -16.12311 -16.05330 -15.91853 -15.76570 -15.63315 -15.27913 -15.11547 -14.48681 -14.24543 -14.10076 -13.85645 -13.66507 -13.50589 -13.21974 -13.10106 -12.90479 -12.77743 -12.70917 -12.35606 -12.32984 -12.01284 -11.98814 -11.96281 -11.64085 -11.28351 -10.92129 -10.79797 -10.72291 -10.52605 -10.41228 -9.68025 -9.36935 -9.03723 -8.14902 -6.26273 0.14165 0.33143 1.41807 1.44056 1.55393 2.37914 2.42990 2.83163 2.92796 3.14516 3.41866 3.49273 3.78217 3.82371 3.94550 3.98518 4.02868 4.13789 4.18314 4.23658 4.29032 4.34180 4.42937 4.48238 4.52175 4.61181 4.61532 4.63280 4.76350 4.77249 4.82472 4.83999 4.88989 4.90010 4.96943 4.99397 5.02941 5.05596 5.24471 5.25367 5.48718 5.56192 5.63687 5.66129 5.85599 5.99612 6.00634 6.15753 6.29697 6.39311 6.84073 6.99294 7.42521 8.94993 Molecular weight = 316.20amu Principal moments of inertia in cm(-1) A = 0.025732 B = 0.002321 C = 0.002212 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1087.892487 B =12062.016440 C =12657.791783 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.563 5.563 3 C 0.061 3.939 4 C 0.074 3.926 5 N -0.479 5.479 6 C 0.291 3.709 7 C -0.184 4.184 8 C -0.053 4.053 9 C -0.146 4.146 10 C 0.066 3.934 11 N -0.480 5.480 12 C 0.021 3.979 13 C 0.019 3.981 14 C -0.527 4.527 15 H 0.062 0.938 16 C 0.013 3.987 17 N -0.923 5.923 18 Si 0.958 3.042 19 H -0.262 1.262 20 H -0.281 1.281 21 H -0.282 1.282 22 C 0.011 3.989 23 C 0.132 3.868 24 N -0.534 5.534 25 C 0.060 3.940 26 C 0.062 3.938 27 H 0.076 0.924 28 H 0.077 0.923 29 H 0.031 0.969 30 H 0.044 0.956 31 H 0.096 0.904 32 H 0.082 0.918 33 H 0.039 0.961 34 H 0.153 0.847 35 H 0.138 0.862 36 H 0.094 0.906 37 H 0.053 0.947 38 H 0.055 0.945 39 H 0.039 0.961 40 H 0.026 0.974 41 H 0.262 0.738 42 H 0.074 0.926 43 H 0.067 0.933 44 H 0.166 0.834 45 H 0.036 0.964 46 H 0.099 0.901 47 H 0.049 0.951 48 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.636 11.550 2.216 24.625 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 N -0.288 5.288 3 C -0.067 4.067 4 C -0.053 4.053 5 N -0.197 5.197 6 C 0.060 3.940 7 C -0.206 4.206 8 C -0.080 4.080 9 C -0.149 4.149 10 C -0.062 4.062 11 N -0.202 5.202 12 C -0.108 4.108 13 C 0.000 4.000 14 C -0.565 4.565 15 H 0.080 0.920 16 C -0.187 4.187 17 N -0.562 5.562 18 Si 0.783 3.217 19 H -0.186 1.186 20 H -0.207 1.207 21 H -0.208 1.208 22 C -0.118 4.118 23 C -0.026 4.026 24 N -0.248 5.248 25 C -0.066 4.066 26 C -0.066 4.066 27 H 0.094 0.906 28 H 0.096 0.904 29 H 0.050 0.950 30 H 0.062 0.938 31 H 0.114 0.886 32 H 0.101 0.899 33 H 0.057 0.943 34 H 0.170 0.830 35 H 0.156 0.844 36 H 0.113 0.887 37 H 0.071 0.929 38 H 0.073 0.927 39 H 0.058 0.942 40 H 0.044 0.956 41 H 0.071 0.929 42 H 0.093 0.907 43 H 0.085 0.915 44 H 0.184 0.816 45 H 0.055 0.945 46 H 0.118 0.882 47 H 0.067 0.933 48 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -22.737 11.755 1.025 25.616 hybrid contribution 1.835 -0.813 1.784 2.685 sum -20.902 10.942 2.809 23.759 Atomic orbital electron populations 1.22383 0.85380 1.02962 1.01332 1.62171 1.09503 1.14007 1.43158 1.22212 0.93035 0.89607 1.01891 1.21970 0.94323 0.98550 0.90453 1.59467 1.02358 1.15324 1.42597 1.20006 0.90026 0.93288 0.90708 1.21662 0.94274 1.03815 1.00818 1.21557 0.94258 0.94799 0.97378 1.20648 0.96584 1.00609 0.97100 1.21507 0.90707 0.96198 0.97824 1.68858 1.15946 1.04398 1.30982 1.23807 0.98184 0.93078 0.95720 1.20044 0.93298 0.91810 0.94891 1.21408 1.07456 0.92957 1.34667 0.92022 1.25849 0.99361 0.96633 0.96809 1.70109 1.37795 1.01102 1.47209 0.85510 0.79527 0.78401 0.78239 1.18645 1.20651 1.20787 1.23845 0.88401 0.98669 1.00855 1.22560 0.88093 0.95410 0.96517 1.67603 1.10693 1.22508 1.23995 1.22413 0.95897 0.86264 1.02064 1.22184 0.92380 0.99891 0.92178 0.90565 0.90431 0.95033 0.93826 0.88579 0.89921 0.94298 0.82966 0.84394 0.88722 0.92861 0.92660 0.94192 0.95592 0.92916 0.90711 0.91472 0.81641 0.94516 0.88249 0.93321 0.88112 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.31 9.60 127.69 1.23 1.53 16 2 N -0.56 -9.32 4.97 -921.97 -4.58 -13.90 16 3 C 0.06 1.02 5.62 86.31 0.49 1.50 16 4 C 0.07 1.64 4.79 86.31 0.41 2.05 16 5 N -0.48 -11.17 4.73 -701.36 -3.32 -14.49 16 6 C 0.29 7.99 6.40 133.06 0.85 8.85 16 7 C -0.18 -4.74 9.21 22.50 0.21 -4.53 16 8 C -0.05 -1.50 9.85 22.44 0.22 -1.28 16 9 C -0.15 -4.33 5.48 -19.76 -0.11 -4.44 16 10 C 0.07 2.04 4.96 85.56 0.42 2.46 16 11 N -0.48 -18.54 6.32 -932.49 -5.89 -24.43 16 12 C 0.02 0.96 7.28 83.57 0.61 1.57 16 13 C 0.02 0.94 3.76 -11.20 -0.04 0.90 16 14 C -0.53 -28.30 8.83 25.60 0.23 -28.08 16 15 H 0.06 3.20 7.81 -2.91 -0.02 3.17 16 16 C 0.01 0.69 5.46 84.65 0.46 1.15 16 17 N -0.92 -53.95 13.26 21.45 0.28 -53.66 16 18 Si 0.96 42.69 29.54 68.60 2.03 44.71 16 19 H -0.26 -11.16 7.11 99.48 0.71 -10.45 16 20 H -0.28 -12.28 7.11 99.48 0.71 -11.57 16 21 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 22 C 0.01 0.43 7.25 83.57 0.61 1.04 16 23 C 0.13 3.80 10.85 84.62 0.92 4.72 16 24 N -0.53 -15.83 8.71 -193.27 -1.68 -17.51 16 25 C 0.06 1.19 5.37 86.31 0.46 1.65 16 26 C 0.06 0.96 5.62 86.31 0.49 1.45 16 27 H 0.08 0.76 8.14 -2.38 -0.02 0.74 16 28 H 0.08 0.75 8.13 -2.39 -0.02 0.73 16 29 H 0.03 0.33 8.14 -2.39 -0.02 0.31 16 30 H 0.04 0.72 8.14 -2.39 -0.02 0.70 16 31 H 0.10 1.34 8.14 -2.39 -0.02 1.32 16 32 H 0.08 1.90 7.83 -2.39 -0.02 1.88 16 33 H 0.04 1.01 8.05 -2.39 -0.02 0.99 16 34 H 0.15 3.16 7.18 -2.91 -0.02 3.14 16 35 H 0.14 3.67 8.06 -2.91 -0.02 3.64 16 36 H 0.09 2.52 8.03 -2.39 -0.02 2.50 16 37 H 0.05 1.63 7.25 -2.39 -0.02 1.61 16 38 H 0.06 2.44 7.38 -2.39 -0.02 2.42 16 39 H 0.04 1.94 8.14 -2.39 -0.02 1.92 16 40 H 0.03 1.48 8.11 -2.39 -0.02 1.46 16 41 H 0.26 14.48 8.31 -92.71 -0.77 13.71 16 42 H 0.07 2.81 8.14 -2.38 -0.02 2.79 16 43 H 0.07 2.53 7.87 -2.39 -0.02 2.51 16 44 H 0.17 4.18 8.06 -2.91 -0.02 4.15 16 45 H 0.04 0.87 8.14 -2.39 -0.02 0.85 16 46 H 0.10 1.72 6.79 -2.39 -0.02 1.70 16 47 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 48 H 0.10 1.25 8.13 -2.39 -0.02 1.23 16 Total: -1.00 -63.46 381.29 -4.79 -68.26 By element: Atomic # 1 Polarization: 19.55 SS G_CDS: 0.92 Total: 20.47 kcal Atomic # 6 Polarization: -16.90 SS G_CDS: 7.45 Total: -9.45 kcal Atomic # 7 Polarization: -108.81 SS G_CDS: -15.19 Total: -123.99 kcal Atomic # 14 Polarization: 42.69 SS G_CDS: 2.03 Total: 44.71 kcal Total: -63.46 -4.79 -68.26 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001232361065.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 145.106 kcal (2) G-P(sol) polarization free energy of solvation -63.461 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.645 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.795 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.256 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.850 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds