Wall clock time and date at job start Tue Mar 31 2020 12:10:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86798 * 119.99954 * 2 1 4 4 H 1.48502 * 109.47483 * 90.00420 * 3 2 1 5 5 H 1.48503 * 109.46770 * 210.00077 * 3 2 1 6 6 H 1.48498 * 109.47272 * 329.99660 * 3 2 1 7 7 C 1.37882 * 120.00054 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99295 * 0.02562 * 7 2 1 9 9 C 1.50692 * 119.99984 * 179.97438 * 7 2 1 10 10 N 1.46900 * 109.46835 * 183.88157 * 9 7 2 11 11 C 1.46901 * 110.99907 * 199.98550 * 10 9 7 12 12 C 1.50705 * 109.46976 * 66.55438 * 11 10 9 13 13 C 1.38309 * 119.96123 * 84.80824 * 12 11 10 14 14 C 1.38260 * 120.14720 * 180.02562 * 13 12 11 15 15 C 1.38125 * 120.08007 * 359.97438 * 14 13 12 16 16 C 1.38890 * 119.91796 * 359.97438 * 15 14 13 17 17 N 1.39677 * 120.07140 * 180.02562 * 16 15 14 18 18 C 1.38078 * 119.96297 * 264.53266 * 12 11 10 19 19 C 1.46906 * 111.00508 * 76.03279 * 10 9 7 20 20 C 1.53020 * 109.46490 * 51.26638 * 19 10 9 21 21 C 1.52999 * 109.45345 * 164.05037 * 20 19 10 22 22 C 1.52984 * 109.50940 * 315.98692 * 21 20 19 23 23 C 1.52998 * 109.46776 * 112.93818 * 22 21 20 24 24 C 1.53001 * 109.43629 * 284.03987 * 23 22 21 25 25 C 1.52986 * 109.48364 * 75.95965 * 24 23 22 26 26 C 1.52987 * 109.50843 * 247.06738 * 25 24 23 27 27 H 0.97004 * 120.00183 * 359.97438 * 1 2 3 28 28 H 1.09003 * 109.47508 * 303.87672 * 9 7 2 29 29 H 1.08990 * 109.47436 * 63.88201 * 9 7 2 30 30 H 1.08997 * 109.47523 * 186.55200 * 11 10 9 31 31 H 1.09000 * 109.47209 * 306.55569 * 11 10 9 32 32 H 1.07997 * 119.92664 * 0.02562 * 13 12 11 33 33 H 1.08006 * 119.96123 * 180.02562 * 14 13 12 34 34 H 1.08001 * 120.04308 * 180.02562 * 15 14 13 35 35 H 0.96999 * 120.00068 * 359.97438 * 17 16 15 36 36 H 0.97000 * 119.99758 * 180.02562 * 17 16 15 37 37 H 1.08003 * 120.03775 * 0.02562 * 18 12 11 38 38 H 1.09000 * 109.47317 * 171.26823 * 19 10 9 39 39 H 1.08996 * 109.47453 * 284.04482 * 20 19 10 40 40 H 1.09001 * 109.47592 * 44.05940 * 20 19 10 41 41 H 1.09002 * 109.45648 * 195.97829 * 21 20 19 42 42 H 1.08994 * 109.46063 * 75.99860 * 21 20 19 43 43 H 1.08999 * 109.47507 * 352.93927 * 22 21 20 44 44 H 1.09006 * 109.47032 * 232.93925 * 22 21 20 45 45 H 1.09006 * 109.48004 * 164.05302 * 23 22 21 46 46 H 1.09003 * 109.47766 * 44.03110 * 23 22 21 47 47 H 1.08996 * 109.46721 * 315.96302 * 24 23 22 48 48 H 1.08998 * 109.47278 * 195.96272 * 24 23 22 49 49 H 1.09005 * 109.46547 * 127.05729 * 25 24 23 50 50 H 1.09000 * 109.46585 * 7.08363 * 25 24 23 51 51 H 1.09000 * 109.47737 * 284.01322 * 26 25 24 52 52 H 1.09003 * 109.47976 * 164.01033 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 1.4001 5 1 3.5466 1.4401 -0.7001 6 1 1.4466 2.6526 -0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4644 -2.1294 0.0005 9 6 3.5115 -1.1941 0.0000 10 7 4.0010 -2.5760 -0.0931 11 6 5.3918 -2.6740 0.3696 12 6 5.4515 -2.3826 1.8470 13 6 5.2115 -3.3930 2.7605 14 6 5.2647 -3.1298 4.1168 15 6 5.5583 -1.8564 4.5640 16 6 5.8008 -0.8397 3.6492 17 7 6.0985 0.4491 4.0979 18 6 5.7511 -1.1086 2.2871 19 6 3.8639 -3.0922 -1.4616 20 6 4.4913 -2.1021 -2.4453 21 6 4.7103 -2.7925 -3.7930 22 6 5.2988 -4.1859 -3.5637 23 6 4.2776 -5.2457 -3.9817 24 6 3.1888 -5.3535 -2.9121 25 6 2.2385 -4.1603 -3.0294 26 6 2.3809 -3.2703 -1.7933 27 1 -0.4850 0.8401 0.0004 28 1 3.8745 -0.6218 -0.8538 29 1 3.8752 -0.7411 0.9221 30 1 5.7671 -3.6800 0.1823 31 1 6.0055 -1.9513 -0.1683 32 1 4.9822 -4.3897 2.4137 33 1 5.0773 -3.9212 4.8276 34 1 5.6001 -1.6516 5.6236 35 1 6.1357 0.6350 5.0491 36 1 6.2673 1.1584 3.4581 37 1 5.9423 -0.3210 1.5732 38 1 4.3718 -4.0535 -1.5399 39 1 3.8250 -1.2498 -2.5776 40 1 5.4485 -1.7579 -2.0536 41 1 5.4000 -2.2016 -4.3958 42 1 3.7573 -2.8819 -4.3143 43 1 5.5392 -4.3095 -2.5078 44 1 6.2051 -4.2999 -4.1585 45 1 4.7768 -6.2086 -4.0903 46 1 3.8264 -4.9609 -4.9322 47 1 3.6491 -5.3554 -1.9241 48 1 2.6300 -6.2784 -3.0544 49 1 1.2119 -4.5194 -3.1021 50 1 2.4859 -3.5852 -3.9217 51 1 1.8732 -3.7368 -0.9491 52 1 1.9337 -2.2965 -1.9931 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001235662903.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:10:02 Heat of formation + Delta-G solvation = 33.970829 kcal Electronic energy + Delta-G solvation = -28419.505081 eV Core-core repulsion = 24997.610203 eV Total energy + Delta-G solvation = -3421.894878 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -39.73921 -38.87028 -36.14701 -34.20473 -32.58578 -32.22410 -31.86640 -30.06039 -28.56363 -27.71733 -25.88650 -25.42531 -23.79082 -22.05580 -21.87494 -21.03307 -20.61687 -19.81862 -18.19697 -16.69897 -16.53947 -16.37598 -15.82589 -15.52127 -15.07146 -14.38795 -13.96874 -13.86199 -13.76000 -13.65507 -13.59400 -13.20687 -12.87801 -12.80385 -12.70549 -12.35323 -12.29037 -11.85984 -11.65889 -11.36400 -11.17884 -10.99696 -10.85235 -10.82163 -10.58093 -10.43641 -10.39125 -10.36390 -10.18144 -10.06144 -9.97079 -9.81374 -9.29139 -9.24318 -8.87411 -8.46771 -8.29233 -7.20013 -7.18144 -5.94881 -3.86999 1.82289 2.05781 3.30674 3.37886 3.38818 4.07558 4.25748 4.48950 4.86359 5.03482 5.13369 5.16106 5.26672 5.27558 5.36302 5.45380 5.53199 5.58352 5.64569 5.65158 5.72266 5.78372 5.85538 5.90058 5.93357 5.98516 6.05623 6.15588 6.22235 6.27287 6.29826 6.34932 6.38282 6.39351 6.48136 6.56196 6.62587 6.67307 6.69540 6.79301 6.89263 6.92089 7.03308 7.07277 7.17931 7.26441 7.28055 7.50987 7.77098 7.79774 7.95809 8.02920 8.20407 8.78958 9.17891 9.68148 11.17849 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.010151 B = 0.005629 C = 0.004246 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2757.609787 B = 4972.709080 C = 6592.326339 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.066 3.934 3 Si 0.864 3.136 4 H -0.279 1.279 5 H -0.269 1.269 6 H -0.289 1.289 7 C -0.492 4.492 8 H 0.090 0.910 9 C 0.148 3.852 10 N -0.514 5.514 11 C 0.088 3.912 12 C -0.013 4.013 13 C -0.153 4.153 14 C -0.077 4.077 15 C -0.205 4.205 16 C 0.210 3.790 17 N -0.884 5.884 18 C -0.184 4.184 19 C 0.085 3.915 20 C -0.149 4.149 21 C -0.122 4.122 22 C -0.126 4.126 23 C -0.116 4.116 24 C -0.128 4.128 25 C -0.129 4.129 26 C -0.102 4.102 27 H 0.260 0.740 28 H -0.003 1.003 29 H 0.027 0.973 30 H 0.070 0.930 31 H 0.030 0.970 32 H 0.117 0.883 33 H 0.115 0.885 34 H 0.112 0.888 35 H 0.394 0.606 36 H 0.395 0.605 37 H 0.112 0.888 38 H 0.085 0.915 39 H 0.072 0.928 40 H 0.049 0.951 41 H 0.048 0.952 42 H 0.074 0.926 43 H 0.071 0.929 44 H 0.050 0.950 45 H 0.052 0.948 46 H 0.059 0.941 47 H 0.074 0.926 48 H 0.050 0.950 49 H 0.053 0.947 50 H 0.063 0.937 51 H 0.068 0.932 52 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.059 -6.369 -0.518 14.539 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.134 4.134 3 Si 0.692 3.308 4 H -0.205 1.205 5 H -0.194 1.194 6 H -0.216 1.216 7 C -0.530 4.530 8 H 0.108 0.892 9 C 0.022 3.978 10 N -0.237 5.237 11 C -0.039 4.039 12 C -0.014 4.014 13 C -0.173 4.173 14 C -0.096 4.096 15 C -0.228 4.228 16 C 0.107 3.893 17 N -0.423 5.423 18 C -0.207 4.207 19 C -0.022 4.022 20 C -0.188 4.188 21 C -0.160 4.160 22 C -0.163 4.163 23 C -0.154 4.154 24 C -0.165 4.165 25 C -0.166 4.166 26 C -0.140 4.140 27 H 0.070 0.930 28 H 0.015 0.985 29 H 0.045 0.955 30 H 0.088 0.912 31 H 0.048 0.952 32 H 0.135 0.865 33 H 0.133 0.867 34 H 0.130 0.870 35 H 0.221 0.779 36 H 0.222 0.778 37 H 0.130 0.870 38 H 0.102 0.898 39 H 0.090 0.910 40 H 0.067 0.933 41 H 0.067 0.933 42 H 0.092 0.908 43 H 0.090 0.910 44 H 0.069 0.931 45 H 0.070 0.930 46 H 0.078 0.922 47 H 0.092 0.908 48 H 0.069 0.931 49 H 0.071 0.929 50 H 0.082 0.918 51 H 0.086 0.914 52 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 12.598 -6.582 -0.225 14.215 hybrid contribution 0.869 2.120 -0.307 2.312 sum 13.467 -4.462 -0.532 14.197 Atomic orbital electron populations 1.69883 1.05911 1.26338 1.52216 1.24856 0.94597 0.98296 0.95663 0.87035 0.80427 0.85016 0.78337 1.20533 1.19420 1.21561 1.21233 0.88860 0.94741 1.48193 0.89206 1.20411 0.97219 0.84488 0.95688 1.62296 1.15344 1.24659 1.21364 1.21042 0.91886 1.00039 0.90982 1.19487 0.94275 0.92427 0.95247 1.20690 1.04884 0.99294 0.92427 1.20777 0.97549 0.95686 0.95583 1.20431 1.11118 0.93296 0.97915 1.17698 0.93617 0.85239 0.92784 1.42401 1.81947 1.08385 1.09565 1.20438 1.09815 0.97311 0.93179 1.22106 0.97208 0.96810 0.86125 1.22295 1.00450 1.00301 0.95799 1.21806 1.00990 0.95387 0.97843 1.21809 0.97665 0.95085 1.01773 1.21695 0.96814 0.98132 0.98750 1.21839 0.96937 0.98201 0.99547 1.21941 0.98338 0.96402 0.99954 1.21836 0.95103 1.01129 0.95886 0.93001 0.98533 0.95477 0.91154 0.95235 0.86535 0.86667 0.87041 0.77900 0.77761 0.87002 0.89766 0.90961 0.93280 0.93314 0.90804 0.91037 0.93115 0.92961 0.92239 0.90768 0.93084 0.92867 0.91826 0.91380 0.89131 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.45 13.96 55.43 0.77 -26.68 16 2 C 0.07 1.89 5.47 -17.82 -0.10 1.79 16 3 Si 0.86 21.62 27.55 -169.99 -4.68 16.93 16 4 H -0.28 -7.00 7.11 56.52 0.40 -6.60 16 5 H -0.27 -6.47 6.43 56.52 0.36 -6.11 16 6 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 7 C -0.49 -13.44 7.43 -34.44 -0.26 -13.70 16 8 H 0.09 2.65 5.94 -52.48 -0.31 2.34 16 9 C 0.15 3.47 3.46 -4.98 -0.02 3.45 16 10 N -0.51 -10.24 4.44 -229.50 -1.02 -11.26 16 11 C 0.09 1.51 4.75 -4.97 -0.02 1.49 16 12 C -0.01 -0.23 4.81 -104.65 -0.50 -0.73 16 13 C -0.15 -2.49 9.72 -39.55 -0.38 -2.87 16 14 C -0.08 -1.15 10.04 -39.61 -0.40 -1.55 16 15 C -0.20 -3.04 9.90 -39.38 -0.39 -3.43 16 16 C 0.21 3.30 6.75 -83.79 -0.57 2.73 16 17 N -0.88 -11.04 9.09 32.41 0.29 -10.74 16 18 C -0.18 -3.19 7.85 -39.38 -0.31 -3.50 16 19 C 0.09 1.50 1.58 -67.69 -0.11 1.39 16 20 C -0.15 -2.52 3.82 -26.72 -0.10 -2.62 16 21 C -0.12 -1.70 5.48 -26.74 -0.15 -1.84 16 22 C -0.13 -1.54 5.47 -26.74 -0.15 -1.69 16 23 C -0.12 -1.36 5.59 -26.73 -0.15 -1.51 16 24 C -0.13 -1.69 5.47 -26.74 -0.15 -1.83 16 25 C -0.13 -1.98 5.48 -26.74 -0.15 -2.12 16 26 C -0.10 -1.94 3.48 -26.73 -0.09 -2.04 16 27 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 28 H 0.00 -0.07 4.47 -51.93 -0.23 -0.30 16 29 H 0.03 0.67 5.06 -51.93 -0.26 0.40 16 30 H 0.07 1.06 7.86 -51.93 -0.41 0.66 16 31 H 0.03 0.50 6.77 -51.93 -0.35 0.15 16 32 H 0.12 1.76 8.06 -52.49 -0.42 1.33 16 33 H 0.12 1.41 8.06 -52.48 -0.42 0.99 16 34 H 0.11 1.39 8.06 -52.49 -0.42 0.96 16 35 H 0.39 3.94 8.84 -40.82 -0.36 3.58 16 36 H 0.39 4.52 8.84 -40.82 -0.36 4.16 16 37 H 0.11 1.92 7.93 -52.48 -0.42 1.50 16 38 H 0.08 1.34 2.56 -51.93 -0.13 1.20 16 39 H 0.07 1.42 6.67 -51.93 -0.35 1.07 16 40 H 0.05 0.82 6.56 -51.93 -0.34 0.48 16 41 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 42 H 0.07 1.04 4.69 -51.93 -0.24 0.80 16 43 H 0.07 0.92 5.47 -51.93 -0.28 0.64 16 44 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 45 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 46 H 0.06 0.68 7.47 -51.93 -0.39 0.29 16 47 H 0.07 1.04 5.47 -51.93 -0.28 0.76 16 48 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 49 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 50 H 0.06 0.95 4.69 -51.93 -0.24 0.70 16 51 H 0.07 1.45 7.19 -51.93 -0.37 1.08 16 52 H 0.09 2.06 6.06 -51.93 -0.31 1.74 16 LS Contribution 367.97 15.07 5.55 5.55 Total: -1.00 -30.29 367.97 -11.28 -41.57 By element: Atomic # 1 Polarization: 21.42 SS G_CDS: -8.21 Total: 13.21 kcal Atomic # 6 Polarization: -24.59 SS G_CDS: -3.98 Total: -28.58 kcal Atomic # 7 Polarization: -48.73 SS G_CDS: 0.05 Total: -48.68 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -4.68 Total: 16.93 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -30.29 -11.28 -41.57 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001235662903.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.538 kcal (2) G-P(sol) polarization free energy of solvation -30.287 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.252 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.281 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.567 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.971 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds