Wall clock time and date at job start Tue Mar 31 2020 12:10:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86798 * 119.99954 * 2 1 4 4 H 1.48502 * 109.47483 * 90.00420 * 3 2 1 5 5 H 1.48503 * 109.46770 * 210.00077 * 3 2 1 6 6 H 1.48498 * 109.47272 * 329.99660 * 3 2 1 7 7 C 1.37882 * 120.00054 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99295 * 0.02562 * 7 2 1 9 9 C 1.50692 * 119.99984 * 179.97438 * 7 2 1 10 10 N 1.46900 * 109.46835 * 183.88157 * 9 7 2 11 11 C 1.46901 * 110.99907 * 199.98550 * 10 9 7 12 12 C 1.50705 * 109.46976 * 66.55438 * 11 10 9 13 13 C 1.38309 * 119.96123 * 84.80824 * 12 11 10 14 14 C 1.38260 * 120.14720 * 180.02562 * 13 12 11 15 15 C 1.38125 * 120.08007 * 359.97438 * 14 13 12 16 16 C 1.38890 * 119.91796 * 359.97438 * 15 14 13 17 17 N 1.39677 * 120.07140 * 180.02562 * 16 15 14 18 18 C 1.38078 * 119.96297 * 264.53266 * 12 11 10 19 19 C 1.46906 * 111.00508 * 76.03279 * 10 9 7 20 20 C 1.53020 * 109.46490 * 51.26638 * 19 10 9 21 21 C 1.52999 * 109.45345 * 164.05037 * 20 19 10 22 22 C 1.52984 * 109.50940 * 315.98692 * 21 20 19 23 23 C 1.52998 * 109.46776 * 112.93818 * 22 21 20 24 24 C 1.53001 * 109.43629 * 284.03987 * 23 22 21 25 25 C 1.52986 * 109.48364 * 75.95965 * 24 23 22 26 26 C 1.52987 * 109.50843 * 247.06738 * 25 24 23 27 27 H 0.97004 * 120.00183 * 359.97438 * 1 2 3 28 28 H 1.09003 * 109.47508 * 303.87672 * 9 7 2 29 29 H 1.08990 * 109.47436 * 63.88201 * 9 7 2 30 30 H 1.08997 * 109.47523 * 186.55200 * 11 10 9 31 31 H 1.09000 * 109.47209 * 306.55569 * 11 10 9 32 32 H 1.07997 * 119.92664 * 0.02562 * 13 12 11 33 33 H 1.08006 * 119.96123 * 180.02562 * 14 13 12 34 34 H 1.08001 * 120.04308 * 180.02562 * 15 14 13 35 35 H 0.96999 * 120.00068 * 359.97438 * 17 16 15 36 36 H 0.97000 * 119.99758 * 180.02562 * 17 16 15 37 37 H 1.08003 * 120.03775 * 0.02562 * 18 12 11 38 38 H 1.09000 * 109.47317 * 171.26823 * 19 10 9 39 39 H 1.08996 * 109.47453 * 284.04482 * 20 19 10 40 40 H 1.09001 * 109.47592 * 44.05940 * 20 19 10 41 41 H 1.09002 * 109.45648 * 195.97829 * 21 20 19 42 42 H 1.08994 * 109.46063 * 75.99860 * 21 20 19 43 43 H 1.08999 * 109.47507 * 352.93927 * 22 21 20 44 44 H 1.09006 * 109.47032 * 232.93925 * 22 21 20 45 45 H 1.09006 * 109.48004 * 164.05302 * 23 22 21 46 46 H 1.09003 * 109.47766 * 44.03110 * 23 22 21 47 47 H 1.08996 * 109.46721 * 315.96302 * 24 23 22 48 48 H 1.08998 * 109.47278 * 195.96272 * 24 23 22 49 49 H 1.09005 * 109.46547 * 127.05729 * 25 24 23 50 50 H 1.09000 * 109.46585 * 7.08363 * 25 24 23 51 51 H 1.09000 * 109.47737 * 284.01322 * 26 25 24 52 52 H 1.09003 * 109.47976 * 164.01033 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 1.4001 5 1 3.5466 1.4401 -0.7001 6 1 1.4466 2.6526 -0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4644 -2.1294 0.0005 9 6 3.5115 -1.1941 0.0000 10 7 4.0010 -2.5760 -0.0931 11 6 5.3918 -2.6740 0.3696 12 6 5.4515 -2.3826 1.8470 13 6 5.2115 -3.3930 2.7605 14 6 5.2647 -3.1298 4.1168 15 6 5.5583 -1.8564 4.5640 16 6 5.8008 -0.8397 3.6492 17 7 6.0985 0.4491 4.0979 18 6 5.7511 -1.1086 2.2871 19 6 3.8639 -3.0922 -1.4616 20 6 4.4913 -2.1021 -2.4453 21 6 4.7103 -2.7925 -3.7930 22 6 5.2988 -4.1859 -3.5637 23 6 4.2776 -5.2457 -3.9817 24 6 3.1888 -5.3535 -2.9121 25 6 2.2385 -4.1603 -3.0294 26 6 2.3809 -3.2703 -1.7933 27 1 -0.4850 0.8401 0.0004 28 1 3.8745 -0.6218 -0.8538 29 1 3.8752 -0.7411 0.9221 30 1 5.7671 -3.6800 0.1823 31 1 6.0055 -1.9513 -0.1683 32 1 4.9822 -4.3897 2.4137 33 1 5.0773 -3.9212 4.8276 34 1 5.6001 -1.6516 5.6236 35 1 6.1357 0.6350 5.0491 36 1 6.2673 1.1584 3.4581 37 1 5.9423 -0.3210 1.5732 38 1 4.3718 -4.0535 -1.5399 39 1 3.8250 -1.2498 -2.5776 40 1 5.4485 -1.7579 -2.0536 41 1 5.4000 -2.2016 -4.3958 42 1 3.7573 -2.8819 -4.3143 43 1 5.5392 -4.3095 -2.5078 44 1 6.2051 -4.2999 -4.1585 45 1 4.7768 -6.2086 -4.0903 46 1 3.8264 -4.9609 -4.9322 47 1 3.6491 -5.3554 -1.9241 48 1 2.6300 -6.2784 -3.0544 49 1 1.2119 -4.5194 -3.1021 50 1 2.4859 -3.5852 -3.9217 51 1 1.8732 -3.7368 -0.9491 52 1 1.9337 -2.2965 -1.9931 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001235662903.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:10:02 Heat of formation + Delta-G solvation = 15.713583 kcal Electronic energy + Delta-G solvation = -28420.296775 eV Core-core repulsion = 24997.610203 eV Total energy + Delta-G solvation = -3422.686571 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.10188 -40.06472 -37.50008 -35.39977 -34.53772 -33.61270 -33.10294 -31.43847 -30.12130 -29.20615 -27.16699 -26.68826 -25.40290 -23.55726 -23.11962 -22.26172 -21.86297 -21.19327 -19.63570 -18.74002 -17.70805 -17.56111 -17.21262 -16.76493 -16.48539 -16.10902 -15.42017 -15.14531 -15.07853 -14.94112 -14.84469 -14.54527 -14.40303 -14.18647 -14.03975 -13.84251 -13.62188 -13.34799 -13.17522 -12.94993 -12.50267 -12.41836 -12.28971 -12.14443 -11.97833 -11.94679 -11.85745 -11.66595 -11.57682 -11.54601 -11.33135 -11.25283 -10.94497 -10.71953 -10.52914 -10.43818 -9.58414 -8.78635 -8.32853 -8.18141 -6.13009 0.59441 0.84325 1.28465 1.29290 1.38336 2.36192 2.94365 3.10768 3.14961 3.49468 3.83242 3.95918 4.05976 4.08260 4.10631 4.29122 4.31705 4.36544 4.39065 4.42312 4.48117 4.52939 4.60249 4.64548 4.71502 4.80066 4.85861 4.92042 5.00733 5.07045 5.10126 5.14092 5.17852 5.20866 5.22106 5.24853 5.30015 5.37178 5.39988 5.47947 5.48481 5.60331 5.67588 5.70191 5.72680 5.79019 5.83736 5.94201 6.11200 6.16878 6.60492 6.66128 6.79352 6.91895 7.03585 7.45220 8.97767 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.010151 B = 0.005629 C = 0.004246 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2757.609787 B = 4972.709080 C = 6592.326339 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.950 5.950 2 C 0.007 3.993 3 Si 0.925 3.075 4 H -0.274 1.274 5 H -0.255 1.255 6 H -0.288 1.288 7 C -0.482 4.482 8 H 0.054 0.946 9 C 0.165 3.835 10 N -0.530 5.530 11 C 0.093 3.907 12 C -0.033 4.033 13 C -0.170 4.170 14 C -0.078 4.078 15 C -0.211 4.211 16 C 0.203 3.797 17 N -0.874 5.874 18 C -0.209 4.209 19 C 0.089 3.911 20 C -0.143 4.143 21 C -0.118 4.118 22 C -0.123 4.123 23 C -0.112 4.112 24 C -0.123 4.123 25 C -0.123 4.123 26 C -0.092 4.092 27 H 0.260 0.740 28 H -0.007 1.007 29 H 0.022 0.978 30 H 0.093 0.907 31 H 0.032 0.968 32 H 0.124 0.876 33 H 0.143 0.857 34 H 0.137 0.863 35 H 0.407 0.593 36 H 0.400 0.600 37 H 0.105 0.895 38 H 0.112 0.888 39 H 0.036 0.964 40 H 0.052 0.948 41 H 0.062 0.938 42 H 0.069 0.931 43 H 0.066 0.934 44 H 0.073 0.927 45 H 0.075 0.925 46 H 0.065 0.935 47 H 0.066 0.934 48 H 0.065 0.935 49 H 0.048 0.952 50 H 0.072 0.928 51 H 0.034 0.966 52 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.833 -7.326 -0.666 17.459 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.593 5.593 2 C -0.189 4.189 3 Si 0.751 3.249 4 H -0.200 1.200 5 H -0.179 1.179 6 H -0.214 1.214 7 C -0.520 4.520 8 H 0.072 0.928 9 C 0.038 3.962 10 N -0.252 5.252 11 C -0.035 4.035 12 C -0.034 4.034 13 C -0.190 4.190 14 C -0.096 4.096 15 C -0.234 4.234 16 C 0.098 3.902 17 N -0.414 5.414 18 C -0.233 4.233 19 C -0.018 4.018 20 C -0.182 4.182 21 C -0.156 4.156 22 C -0.160 4.160 23 C -0.149 4.149 24 C -0.160 4.160 25 C -0.161 4.161 26 C -0.130 4.130 27 H 0.069 0.931 28 H 0.011 0.989 29 H 0.040 0.960 30 H 0.112 0.888 31 H 0.050 0.950 32 H 0.142 0.858 33 H 0.160 0.840 34 H 0.155 0.845 35 H 0.236 0.764 36 H 0.228 0.772 37 H 0.123 0.877 38 H 0.129 0.871 39 H 0.054 0.946 40 H 0.071 0.929 41 H 0.081 0.919 42 H 0.088 0.912 43 H 0.084 0.916 44 H 0.091 0.909 45 H 0.093 0.907 46 H 0.084 0.916 47 H 0.084 0.916 48 H 0.084 0.916 49 H 0.067 0.933 50 H 0.090 0.910 51 H 0.053 0.947 52 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 15.404 -7.534 -0.364 17.151 hybrid contribution -0.031 2.346 -0.200 2.355 sum 15.373 -5.188 -0.564 16.234 Atomic orbital electron populations 1.70037 1.07654 1.27126 1.54506 1.25621 0.95332 1.02000 0.95937 0.86029 0.79638 0.80628 0.78574 1.19999 1.17872 1.21374 1.21446 0.91065 0.93293 1.46229 0.92769 1.20061 0.94379 0.86778 0.95001 1.62159 1.17736 1.22257 1.23059 1.21080 0.89862 1.01418 0.91117 1.19627 0.95288 0.93025 0.95468 1.20897 1.05492 0.99485 0.93160 1.21146 0.96310 0.96621 0.95569 1.20794 1.10349 0.93045 0.99162 1.17892 0.93220 0.86619 0.92497 1.42385 1.81001 1.07472 1.10583 1.20529 1.11397 0.97291 0.94052 1.22177 0.96168 0.98180 0.85320 1.22179 0.99438 0.99053 0.97572 1.21785 1.01384 0.96646 0.95786 1.21784 0.98597 0.93743 1.01856 1.21677 0.96039 0.99118 0.98095 1.21785 0.97051 0.97300 0.99879 1.21886 0.99151 0.96941 0.98091 1.21592 0.95814 0.99064 0.96490 0.93128 0.98938 0.95995 0.88845 0.94998 0.85818 0.83952 0.84476 0.76370 0.77173 0.87687 0.87079 0.94558 0.92902 0.91933 0.91235 0.91588 0.90873 0.90678 0.91607 0.91596 0.91640 0.93305 0.91009 0.94697 0.93867 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.49 13.96 21.45 0.30 -60.19 16 2 C 0.01 0.40 5.47 84.66 0.46 0.86 16 3 Si 0.93 45.79 27.55 68.60 1.89 47.68 16 4 H -0.27 -13.28 7.11 99.48 0.71 -12.57 16 5 H -0.25 -11.86 6.43 99.48 0.64 -11.22 16 6 H -0.29 -14.06 7.11 99.48 0.71 -13.35 16 7 C -0.48 -27.68 7.43 25.60 0.19 -27.49 16 8 H 0.05 3.44 5.94 -2.91 -0.02 3.42 16 9 C 0.16 7.93 3.46 85.55 0.30 8.22 16 10 N -0.53 -21.42 4.44 -880.01 -3.90 -25.33 16 11 C 0.09 3.10 4.75 85.56 0.41 3.51 16 12 C -0.03 -1.13 4.81 -19.88 -0.10 -1.23 16 13 C -0.17 -5.36 9.72 22.29 0.22 -5.15 16 14 C -0.08 -2.18 10.04 22.25 0.22 -1.95 16 15 C -0.21 -5.81 9.90 22.40 0.22 -5.59 16 16 C 0.20 6.09 6.75 38.21 0.26 6.34 16 17 N -0.87 -20.29 9.09 -51.37 -0.47 -20.76 16 18 C -0.21 -7.14 7.85 22.40 0.18 -6.97 16 19 C 0.09 3.14 1.58 44.92 0.07 3.21 16 20 C -0.14 -4.80 3.82 30.60 0.12 -4.68 16 21 C -0.12 -3.05 5.48 30.59 0.17 -2.88 16 22 C -0.12 -2.58 5.47 30.59 0.17 -2.41 16 23 C -0.11 -2.21 5.59 30.59 0.17 -2.04 16 24 C -0.12 -2.99 5.47 30.59 0.17 -2.83 16 25 C -0.12 -3.80 5.48 30.59 0.17 -3.64 16 26 C -0.09 -3.69 3.48 30.59 0.11 -3.58 16 27 H 0.26 15.65 8.31 -92.71 -0.77 14.88 16 28 H -0.01 -0.34 4.47 -2.39 -0.01 -0.35 16 29 H 0.02 1.09 5.06 -2.39 -0.01 1.08 16 30 H 0.09 2.66 7.86 -2.39 -0.02 2.64 16 31 H 0.03 1.05 6.77 -2.39 -0.02 1.04 16 32 H 0.12 3.60 8.06 -2.91 -0.02 3.57 16 33 H 0.14 3.09 8.06 -2.91 -0.02 3.07 16 34 H 0.14 2.99 8.06 -2.91 -0.02 2.97 16 35 H 0.41 7.22 8.84 -92.71 -0.82 6.40 16 36 H 0.40 8.55 8.84 -92.71 -0.82 7.73 16 37 H 0.11 3.60 7.93 -2.91 -0.02 3.58 16 38 H 0.11 3.38 2.56 -2.39 -0.01 3.37 16 39 H 0.04 1.46 6.67 -2.39 -0.02 1.44 16 40 H 0.05 1.72 6.56 -2.39 -0.02 1.70 16 41 H 0.06 1.45 8.14 -2.39 -0.02 1.44 16 42 H 0.07 1.86 4.69 -2.39 -0.01 1.85 16 43 H 0.07 1.48 5.47 -2.39 -0.01 1.47 16 44 H 0.07 1.28 8.14 -2.38 -0.02 1.26 16 45 H 0.07 1.21 8.14 -2.38 -0.02 1.19 16 46 H 0.07 1.26 7.47 -2.39 -0.02 1.24 16 47 H 0.07 1.73 5.47 -2.39 -0.01 1.71 16 48 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 49 H 0.05 1.52 8.14 -2.38 -0.02 1.50 16 50 H 0.07 2.11 4.69 -2.39 -0.01 2.10 16 51 H 0.03 1.59 7.19 -2.39 -0.02 1.58 16 52 H 0.04 2.12 6.06 -2.39 -0.01 2.10 16 Total: -1.00 -69.17 367.97 0.55 -68.62 By element: Atomic # 1 Polarization: 39.01 SS G_CDS: -0.76 Total: 38.25 kcal Atomic # 6 Polarization: -51.77 SS G_CDS: 3.49 Total: -48.28 kcal Atomic # 7 Polarization: -102.20 SS G_CDS: -4.07 Total: -106.27 kcal Atomic # 14 Polarization: 45.79 SS G_CDS: 1.89 Total: 47.68 kcal Total: -69.17 0.55 -68.62 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001235662903.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.333 kcal (2) G-P(sol) polarization free energy of solvation -69.170 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.163 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.551 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.620 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.714 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds