Wall clock time and date at job start Tue Mar 31 2020 12:09:52
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31513 * 1
3 3 Si 1.86800 * 120.00050 * 2 1
4 4 H 1.48491 * 109.47289 * 89.99845 * 3 2 1
5 5 H 1.48500 * 109.47088 * 210.00030 * 3 2 1
6 6 H 1.48507 * 109.46945 * 329.99737 * 3 2 1
7 7 C 1.37885 * 120.00488 * 179.97438 * 2 1 3
8 8 H 1.08002 * 119.99066 * 0.02562 * 7 2 1
9 9 C 1.50692 * 120.00472 * 180.02562 * 7 2 1
10 10 N 1.46898 * 109.47151 * 183.85998 * 9 7 2
11 11 C 1.46905 * 110.99562 * 199.98804 * 10 9 7
12 12 C 1.50699 * 109.47533 * 66.55807 * 11 10 9
13 13 C 1.38284 * 119.91993 * 264.53186 * 12 11 10
14 14 C 1.38109 * 120.07101 * 179.72580 * 13 12 11
15 15 C 1.38912 * 119.92317 * 0.54096 * 14 13 12
16 16 N 1.39677 * 120.07356 * 179.75191 * 15 14 13
17 17 C 1.38909 * 119.85404 * 359.72965 * 15 14 13
18 18 C 1.38105 * 119.92098 * 359.97438 * 17 15 14
19 19 C 1.46896 * 111.00072 * 76.03634 * 10 9 7
20 20 C 1.53009 * 109.47213 * 51.26395 * 19 10 9
21 21 C 1.52994 * 109.45825 * 164.04965 * 20 19 10
22 22 C 1.52981 * 109.50794 * 315.98679 * 21 20 19
23 23 C 1.53011 * 109.46740 * 112.94049 * 22 21 20
24 24 C 1.53007 * 109.42922 * 284.03817 * 23 22 21
25 25 C 1.52987 * 109.48098 * 75.96409 * 24 23 22
26 26 C 1.52995 * 109.50436 * 247.06182 * 25 24 23
27 27 H 0.96995 * 119.99973 * 359.97438 * 1 2 3
28 28 H 1.09000 * 109.46898 * 303.86175 * 9 7 2
29 29 H 1.09009 * 109.46889 * 63.85762 * 9 7 2
30 30 H 1.09010 * 109.46841 * 186.55532 * 11 10 9
31 31 H 1.08996 * 109.47053 * 306.55156 * 11 10 9
32 32 H 1.07996 * 119.96424 * 359.96926 * 13 12 11
33 33 H 1.07999 * 120.03729 * 180.27314 * 14 13 12
34 34 H 0.96998 * 119.99689 * 179.97438 * 16 15 14
35 35 H 0.96997 * 119.99955 * 359.97438 * 16 15 14
36 36 H 1.07996 * 120.03821 * 179.97438 * 17 15 14
37 37 H 1.08003 * 119.96163 * 180.02562 * 18 17 15
38 38 H 1.08995 * 109.47360 * 171.26862 * 19 10 9
39 39 H 1.08999 * 109.47414 * 284.04461 * 20 19 10
40 40 H 1.08995 * 109.47478 * 44.05619 * 20 19 10
41 41 H 1.09004 * 109.46165 * 195.97941 * 21 20 19
42 42 H 1.08994 * 109.45971 * 75.99488 * 21 20 19
43 43 H 1.08994 * 109.47350 * 352.93900 * 22 21 20
44 44 H 1.09001 * 109.47113 * 232.93664 * 22 21 20
45 45 H 1.09007 * 109.47829 * 164.05692 * 23 22 21
46 46 H 1.08991 * 109.48143 * 44.02776 * 23 22 21
47 47 H 1.08999 * 109.47050 * 315.95829 * 24 23 22
48 48 H 1.08999 * 109.46339 * 195.96561 * 24 23 22
49 49 H 1.09002 * 109.46580 * 127.05462 * 25 24 23
50 50 H 1.08997 * 109.46919 * 7.07151 * 25 24 23
51 51 H 1.09004 * 109.47482 * 284.01664 * 26 25 24
52 52 H 1.09003 * 109.47497 * 164.01141 * 26 25 24
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3151 0.0000 0.0000
3 14 2.2491 1.6177 0.0000
4 1 2.4966 2.0464 1.4000
5 1 3.5467 1.4401 -0.7000
6 1 1.4465 2.6527 -0.7001
7 6 2.0046 -1.1941 0.0005
8 1 1.4646 -2.1293 0.0005
9 6 3.5116 -1.1941 0.0011
10 7 4.0013 -2.5759 -0.0916
11 6 5.3917 -2.6738 0.3722
12 6 5.4502 -2.3826 1.8497
13 6 5.7500 -1.1065 2.2898
14 6 5.7989 -0.8348 3.6431
15 6 5.5575 -1.8479 4.5623
16 7 5.6113 -1.5779 5.9317
17 6 5.2622 -3.1300 4.1168
18 6 5.2090 -3.3933 2.7621
19 6 3.8653 -3.0919 -1.4602
20 6 4.4933 -2.1018 -2.4434
21 6 4.7134 -2.7919 -3.7910
22 6 5.3018 -4.1853 -3.5613
23 6 4.2810 -5.2453 -3.9803
24 6 3.1914 -5.3531 -2.9115
25 6 2.2411 -4.1600 -3.0295
26 6 2.3825 -3.2701 -1.7931
27 1 -0.4850 0.8400 0.0004
28 1 3.8752 -0.6216 -0.8522
29 1 3.8745 -0.7410 0.9238
30 1 5.7672 -3.6800 0.1851
31 1 6.0057 -1.9511 -0.1652
32 1 5.9422 -0.3205 1.5746
33 1 6.0287 0.1631 3.9862
34 1 5.4422 -2.2860 6.5726
35 1 5.8176 -0.6822 6.2417
36 1 5.0745 -3.9200 4.8289
37 1 4.9790 -4.3899 2.4149
38 1 4.3732 -4.0531 -1.5383
39 1 3.8270 -1.2495 -2.5762
40 1 5.4501 -1.7575 -2.0509
41 1 5.4036 -2.2010 -4.3932
42 1 3.7608 -2.8814 -4.3129
43 1 5.5414 -4.3090 -2.5053
44 1 6.2085 -4.2992 -4.1554
45 1 4.7804 -6.2081 -4.0885
46 1 3.8305 -4.9604 -4.9310
47 1 3.6510 -5.3552 -1.9231
48 1 2.6328 -6.2781 -3.0543
49 1 1.2145 -4.5192 -3.1030
50 1 2.4892 -3.5848 -3.9214
51 1 1.8741 -3.7368 -0.9493
52 1 1.9354 -2.2963 -1.9932
RHF calculation, no. of doubly occupied orbitals= 61
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001235664884.mol2 52
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 12:09:52
Heat of formation + Delta-G solvation = 34.104976 kcal
Electronic energy + Delta-G solvation = -28289.300326 eV
Core-core repulsion = 24867.411266 eV
Total energy + Delta-G solvation = -3421.889061 eV
No. of doubly occupied orbitals = 61
Molecular weight
(most abundant/longest-lived isotopes) = 316.221 amu
Computer time = 0.71 seconds
Orbital eigenvalues (eV)
-39.70711 -38.87509 -36.20169 -34.22542 -32.53406 -32.19264 -31.26773 -30.50884
-29.11562 -27.58575 -25.62623 -25.21822 -23.49190 -22.52135 -21.84223 -20.92174
-20.63190 -19.82751 -18.17279 -16.79925 -16.70151 -16.52663 -15.82801 -15.28331
-14.84694 -14.34697 -13.93209 -13.80284 -13.72906 -13.62576 -13.50324 -13.03534
-12.98388 -12.83974 -12.73272 -12.63475 -12.34338 -11.82801 -11.64592 -11.38463
-11.23541 -10.95579 -10.83275 -10.68223 -10.55996 -10.42456 -10.37615 -10.32935
-10.13186 -10.04063 -9.91106 -9.78884 -9.26975 -9.21450 -8.84995 -8.51173
-8.37295 -7.24322 -7.05998 -5.93009 -3.85099 1.85995 1.99737 3.33487
3.40558 3.42222 4.04242 4.23663 4.51324 4.88987 5.06282 5.14974
5.18463 5.23353 5.34852 5.38196 5.44026 5.51068 5.59689 5.66431
5.67372 5.71048 5.79900 5.85715 5.89279 5.98606 6.03295 6.07509
6.18396 6.22508 6.24906 6.31813 6.36716 6.40535 6.44839 6.49550
6.57739 6.63780 6.66975 6.71322 6.80160 6.83014 6.91472 7.05964
7.10526 7.21485 7.24439 7.29301 7.53081 7.72916 7.82251 7.90435
8.06951 8.25279 8.81669 9.19705 9.70276 11.19742
Molecular weight = 316.22amu
Principal moments of inertia in cm(-1)
A = 0.010023 B = 0.005416 C = 0.004062
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2792.924360 B = 5168.363318 C = 6891.601974
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.904 5.904
2 C 0.066 3.934
3 Si 0.863 3.137
4 H -0.278 1.278
5 H -0.268 1.268
6 H -0.289 1.289
7 C -0.492 4.492
8 H 0.090 0.910
9 C 0.149 3.851
10 N -0.517 5.517
11 C 0.097 3.903
12 C -0.115 4.115
13 C -0.061 4.061
14 C -0.199 4.199
15 C 0.205 3.795
16 N -0.885 5.885
17 C -0.200 4.200
18 C -0.049 4.049
19 C 0.085 3.915
20 C -0.149 4.149
21 C -0.123 4.123
22 C -0.126 4.126
23 C -0.116 4.116
24 C -0.128 4.128
25 C -0.129 4.129
26 C -0.102 4.102
27 H 0.260 0.740
28 H -0.003 1.003
29 H 0.026 0.974
30 H 0.066 0.934
31 H 0.027 0.973
32 H 0.114 0.886
33 H 0.112 0.888
34 H 0.394 0.606
35 H 0.394 0.606
36 H 0.113 0.887
37 H 0.119 0.881
38 H 0.084 0.916
39 H 0.072 0.928
40 H 0.049 0.951
41 H 0.048 0.952
42 H 0.073 0.927
43 H 0.071 0.929
44 H 0.050 0.950
45 H 0.051 0.949
46 H 0.059 0.941
47 H 0.074 0.926
48 H 0.050 0.950
49 H 0.052 0.948
50 H 0.063 0.937
51 H 0.067 0.933
52 H 0.090 0.910
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 12.850 -7.538 0.648 14.911
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.544 5.544
2 C -0.134 4.134
3 Si 0.691 3.309
4 H -0.204 1.204
5 H -0.193 1.193
6 H -0.216 1.216
7 C -0.530 4.530
8 H 0.107 0.893
9 C 0.023 3.977
10 N -0.239 5.239
11 C -0.031 4.031
12 C -0.117 4.117
13 C -0.081 4.081
14 C -0.221 4.221
15 C 0.102 3.898
16 N -0.424 5.424
17 C -0.222 4.222
18 C -0.068 4.068
19 C -0.023 4.023
20 C -0.188 4.188
21 C -0.160 4.160
22 C -0.163 4.163
23 C -0.154 4.154
24 C -0.165 4.165
25 C -0.166 4.166
26 C -0.139 4.139
27 H 0.070 0.930
28 H 0.015 0.985
29 H 0.044 0.956
30 H 0.084 0.916
31 H 0.045 0.955
32 H 0.132 0.868
33 H 0.131 0.869
34 H 0.221 0.779
35 H 0.221 0.779
36 H 0.131 0.869
37 H 0.137 0.863
38 H 0.102 0.898
39 H 0.090 0.910
40 H 0.067 0.933
41 H 0.067 0.933
42 H 0.092 0.908
43 H 0.090 0.910
44 H 0.069 0.931
45 H 0.070 0.930
46 H 0.078 0.922
47 H 0.092 0.908
48 H 0.069 0.931
49 H 0.071 0.929
50 H 0.082 0.918
51 H 0.086 0.914
52 H 0.108 0.892
Dipole moment (debyes) X Y Z Total
from point charges 12.398 -7.713 0.904 14.630
hybrid contribution 0.789 1.818 -0.042 1.983
sum 13.188 -5.895 0.862 14.471
Atomic orbital electron populations
1.69883 1.05938 1.26341 1.52282 1.24858 0.94592 0.98321 0.95645
0.87050 0.80467 0.84977 0.78444 1.20446 1.19329 1.21557 1.21243
0.88922 0.94706 1.48147 0.89260 1.20383 0.97136 0.84597 0.95581
1.62308 1.15900 1.24565 1.21127 1.20914 0.91456 0.99689 0.91050
1.19510 1.03434 0.93434 0.95326 1.20768 0.96680 0.95993 0.94632
1.20449 1.10778 0.97947 0.92940 1.17714 0.94423 0.93601 0.84037
1.42387 1.82483 1.13926 1.03650 1.20473 1.10577 0.95043 0.96139
1.20661 0.95518 0.98854 0.91757 1.22092 0.97101 0.96790 0.86295
1.22290 1.00474 1.00301 0.95765 1.21806 1.00959 0.95378 0.97888
1.21809 0.97644 0.95093 1.01779 1.21697 0.96819 0.98126 0.98748
1.21839 0.96931 0.98185 0.99552 1.21944 0.98299 0.96409 0.99998
1.21837 0.95194 1.01086 0.95816 0.93017 0.98526 0.95620 0.91589
0.95465 0.86838 0.86946 0.77882 0.77897 0.86864 0.86309 0.89840
0.90981 0.93250 0.93329 0.90834 0.91021 0.93136 0.92986 0.92249
0.90773 0.93123 0.92907 0.91827 0.91444 0.89154
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.90 -27.55 13.96 55.43 0.77 -26.78 16
2 C 0.07 1.89 5.47 -17.82 -0.10 1.79 16
3 Si 0.86 21.70 27.55 -169.99 -4.68 17.02 16
4 H -0.28 -7.01 7.11 56.52 0.40 -6.61 16
5 H -0.27 -6.48 6.43 56.52 0.36 -6.12 16
6 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16
7 C -0.49 -13.47 7.43 -34.44 -0.26 -13.73 16
8 H 0.09 2.64 5.94 -52.49 -0.31 2.33 16
9 C 0.15 3.50 3.46 -4.98 -0.02 3.49 16
10 N -0.52 -10.31 4.44 -229.51 -1.02 -11.33 16
11 C 0.10 1.66 4.75 -4.97 -0.02 1.63 16
12 C -0.11 -1.99 4.82 -104.59 -0.50 -2.49 16
13 C -0.06 -1.06 7.99 -39.61 -0.32 -1.37 16
14 C -0.20 -3.13 9.90 -39.38 -0.39 -3.52 16
15 C 0.21 3.01 6.75 -83.79 -0.57 2.44 16
16 N -0.88 -9.65 9.09 32.41 0.29 -9.35 16
17 C -0.20 -2.97 9.90 -39.38 -0.39 -3.36 16
18 C -0.05 -0.78 9.71 -39.61 -0.38 -1.17 16
19 C 0.09 1.50 1.58 -67.70 -0.11 1.39 16
20 C -0.15 -2.53 3.82 -26.73 -0.10 -2.63 16
21 C -0.12 -1.71 5.48 -26.74 -0.15 -1.85 16
22 C -0.13 -1.55 5.47 -26.74 -0.15 -1.70 16
23 C -0.12 -1.36 5.59 -26.72 -0.15 -1.51 16
24 C -0.13 -1.69 5.47 -26.73 -0.15 -1.84 16
25 C -0.13 -1.99 5.48 -26.74 -0.15 -2.14 16
26 C -0.10 -1.95 3.48 -26.73 -0.09 -2.04 16
27 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16
28 H 0.00 -0.07 4.47 -51.93 -0.23 -0.30 16
29 H 0.03 0.63 5.06 -51.92 -0.26 0.37 16
30 H 0.07 1.00 7.86 -51.92 -0.41 0.59 16
31 H 0.03 0.46 6.77 -51.93 -0.35 0.11 16
32 H 0.11 1.91 7.93 -52.49 -0.42 1.49 16
33 H 0.11 1.56 8.06 -52.49 -0.42 1.14 16
34 H 0.39 3.48 8.84 -40.82 -0.36 3.12 16
35 H 0.39 3.61 8.84 -40.82 -0.36 3.25 16
36 H 0.11 1.42 8.06 -52.49 -0.42 1.00 16
37 H 0.12 1.74 8.06 -52.48 -0.42 1.32 16
38 H 0.08 1.33 2.56 -51.93 -0.13 1.20 16
39 H 0.07 1.42 6.67 -51.93 -0.35 1.07 16
40 H 0.05 0.83 6.56 -51.93 -0.34 0.49 16
41 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16
42 H 0.07 1.04 4.69 -51.93 -0.24 0.80 16
43 H 0.07 0.93 5.47 -51.93 -0.28 0.65 16
44 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16
45 H 0.05 0.54 8.14 -51.92 -0.42 0.12 16
46 H 0.06 0.68 7.47 -51.93 -0.39 0.29 16
47 H 0.07 1.05 5.47 -51.93 -0.28 0.76 16
48 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16
49 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16
50 H 0.06 0.95 4.69 -51.93 -0.24 0.71 16
51 H 0.07 1.44 7.19 -51.93 -0.37 1.07 16
52 H 0.09 2.06 6.06 -51.93 -0.31 1.75 16
LS Contribution 367.97 15.07 5.55 5.55
Total: -1.00 -30.38 367.97 -11.28 -41.66
By element:
Atomic # 1 Polarization: 20.06 SS G_CDS: -8.21 Total: 11.85 kcal
Atomic # 6 Polarization: -24.62 SS G_CDS: -3.98 Total: -28.60 kcal
Atomic # 7 Polarization: -47.51 SS G_CDS: 0.05 Total: -47.46 kcal
Atomic # 14 Polarization: 21.70 SS G_CDS: -4.68 Total: 17.02 kcal
Total LS contribution 5.55 Total: 5.55 kcal
Total: -30.38 -11.28 -41.66 kcal
The number of atoms in the molecule is 52
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001235664884.mol2 52
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 75.761 kcal
(2) G-P(sol) polarization free energy of solvation -30.375 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.386 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.281 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.656 kcal
(6) G-S(sol) free energy of system = (1) + (5) 34.105 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.71 seconds