Wall clock time and date at job start Tue Mar 31 2020 12:09:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86800 * 120.00050 * 2 1 4 4 H 1.48491 * 109.47289 * 89.99845 * 3 2 1 5 5 H 1.48500 * 109.47088 * 210.00030 * 3 2 1 6 6 H 1.48507 * 109.46945 * 329.99737 * 3 2 1 7 7 C 1.37885 * 120.00488 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99066 * 0.02562 * 7 2 1 9 9 C 1.50692 * 120.00472 * 180.02562 * 7 2 1 10 10 N 1.46898 * 109.47151 * 183.85998 * 9 7 2 11 11 C 1.46905 * 110.99562 * 199.98804 * 10 9 7 12 12 C 1.50699 * 109.47533 * 66.55807 * 11 10 9 13 13 C 1.38284 * 119.91993 * 264.53186 * 12 11 10 14 14 C 1.38109 * 120.07101 * 179.72580 * 13 12 11 15 15 C 1.38912 * 119.92317 * 0.54096 * 14 13 12 16 16 N 1.39677 * 120.07356 * 179.75191 * 15 14 13 17 17 C 1.38909 * 119.85404 * 359.72965 * 15 14 13 18 18 C 1.38105 * 119.92098 * 359.97438 * 17 15 14 19 19 C 1.46896 * 111.00072 * 76.03634 * 10 9 7 20 20 C 1.53009 * 109.47213 * 51.26395 * 19 10 9 21 21 C 1.52994 * 109.45825 * 164.04965 * 20 19 10 22 22 C 1.52981 * 109.50794 * 315.98679 * 21 20 19 23 23 C 1.53011 * 109.46740 * 112.94049 * 22 21 20 24 24 C 1.53007 * 109.42922 * 284.03817 * 23 22 21 25 25 C 1.52987 * 109.48098 * 75.96409 * 24 23 22 26 26 C 1.52995 * 109.50436 * 247.06182 * 25 24 23 27 27 H 0.96995 * 119.99973 * 359.97438 * 1 2 3 28 28 H 1.09000 * 109.46898 * 303.86175 * 9 7 2 29 29 H 1.09009 * 109.46889 * 63.85762 * 9 7 2 30 30 H 1.09010 * 109.46841 * 186.55532 * 11 10 9 31 31 H 1.08996 * 109.47053 * 306.55156 * 11 10 9 32 32 H 1.07996 * 119.96424 * 359.96926 * 13 12 11 33 33 H 1.07999 * 120.03729 * 180.27314 * 14 13 12 34 34 H 0.96998 * 119.99689 * 179.97438 * 16 15 14 35 35 H 0.96997 * 119.99955 * 359.97438 * 16 15 14 36 36 H 1.07996 * 120.03821 * 179.97438 * 17 15 14 37 37 H 1.08003 * 119.96163 * 180.02562 * 18 17 15 38 38 H 1.08995 * 109.47360 * 171.26862 * 19 10 9 39 39 H 1.08999 * 109.47414 * 284.04461 * 20 19 10 40 40 H 1.08995 * 109.47478 * 44.05619 * 20 19 10 41 41 H 1.09004 * 109.46165 * 195.97941 * 21 20 19 42 42 H 1.08994 * 109.45971 * 75.99488 * 21 20 19 43 43 H 1.08994 * 109.47350 * 352.93900 * 22 21 20 44 44 H 1.09001 * 109.47113 * 232.93664 * 22 21 20 45 45 H 1.09007 * 109.47829 * 164.05692 * 23 22 21 46 46 H 1.08991 * 109.48143 * 44.02776 * 23 22 21 47 47 H 1.08999 * 109.47050 * 315.95829 * 24 23 22 48 48 H 1.08999 * 109.46339 * 195.96561 * 24 23 22 49 49 H 1.09002 * 109.46580 * 127.05462 * 25 24 23 50 50 H 1.08997 * 109.46919 * 7.07151 * 25 24 23 51 51 H 1.09004 * 109.47482 * 284.01664 * 26 25 24 52 52 H 1.09003 * 109.47497 * 164.01141 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 1.4000 5 1 3.5467 1.4401 -0.7000 6 1 1.4465 2.6527 -0.7001 7 6 2.0046 -1.1941 0.0005 8 1 1.4646 -2.1293 0.0005 9 6 3.5116 -1.1941 0.0011 10 7 4.0013 -2.5759 -0.0916 11 6 5.3917 -2.6738 0.3722 12 6 5.4502 -2.3826 1.8497 13 6 5.7500 -1.1065 2.2898 14 6 5.7989 -0.8348 3.6431 15 6 5.5575 -1.8479 4.5623 16 7 5.6113 -1.5779 5.9317 17 6 5.2622 -3.1300 4.1168 18 6 5.2090 -3.3933 2.7621 19 6 3.8653 -3.0919 -1.4602 20 6 4.4933 -2.1018 -2.4434 21 6 4.7134 -2.7919 -3.7910 22 6 5.3018 -4.1853 -3.5613 23 6 4.2810 -5.2453 -3.9803 24 6 3.1914 -5.3531 -2.9115 25 6 2.2411 -4.1600 -3.0295 26 6 2.3825 -3.2701 -1.7931 27 1 -0.4850 0.8400 0.0004 28 1 3.8752 -0.6216 -0.8522 29 1 3.8745 -0.7410 0.9238 30 1 5.7672 -3.6800 0.1851 31 1 6.0057 -1.9511 -0.1652 32 1 5.9422 -0.3205 1.5746 33 1 6.0287 0.1631 3.9862 34 1 5.4422 -2.2860 6.5726 35 1 5.8176 -0.6822 6.2417 36 1 5.0745 -3.9200 4.8289 37 1 4.9790 -4.3899 2.4149 38 1 4.3732 -4.0531 -1.5383 39 1 3.8270 -1.2495 -2.5762 40 1 5.4501 -1.7575 -2.0509 41 1 5.4036 -2.2010 -4.3932 42 1 3.7608 -2.8814 -4.3129 43 1 5.5414 -4.3090 -2.5053 44 1 6.2085 -4.2992 -4.1554 45 1 4.7804 -6.2081 -4.0885 46 1 3.8305 -4.9604 -4.9310 47 1 3.6510 -5.3552 -1.9231 48 1 2.6328 -6.2781 -3.0543 49 1 1.2145 -4.5192 -3.1030 50 1 2.4892 -3.5848 -3.9214 51 1 1.8741 -3.7368 -0.9493 52 1 1.9354 -2.2963 -1.9932 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001235664884.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:09:52 Heat of formation + Delta-G solvation = 34.104976 kcal Electronic energy + Delta-G solvation = -28289.300326 eV Core-core repulsion = 24867.411266 eV Total energy + Delta-G solvation = -3421.889061 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -39.70711 -38.87509 -36.20169 -34.22542 -32.53406 -32.19264 -31.26773 -30.50884 -29.11562 -27.58575 -25.62623 -25.21822 -23.49190 -22.52135 -21.84223 -20.92174 -20.63190 -19.82751 -18.17279 -16.79925 -16.70151 -16.52663 -15.82801 -15.28331 -14.84694 -14.34697 -13.93209 -13.80284 -13.72906 -13.62576 -13.50324 -13.03534 -12.98388 -12.83974 -12.73272 -12.63475 -12.34338 -11.82801 -11.64592 -11.38463 -11.23541 -10.95579 -10.83275 -10.68223 -10.55996 -10.42456 -10.37615 -10.32935 -10.13186 -10.04063 -9.91106 -9.78884 -9.26975 -9.21450 -8.84995 -8.51173 -8.37295 -7.24322 -7.05998 -5.93009 -3.85099 1.85995 1.99737 3.33487 3.40558 3.42222 4.04242 4.23663 4.51324 4.88987 5.06282 5.14974 5.18463 5.23353 5.34852 5.38196 5.44026 5.51068 5.59689 5.66431 5.67372 5.71048 5.79900 5.85715 5.89279 5.98606 6.03295 6.07509 6.18396 6.22508 6.24906 6.31813 6.36716 6.40535 6.44839 6.49550 6.57739 6.63780 6.66975 6.71322 6.80160 6.83014 6.91472 7.05964 7.10526 7.21485 7.24439 7.29301 7.53081 7.72916 7.82251 7.90435 8.06951 8.25279 8.81669 9.19705 9.70276 11.19742 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.010023 B = 0.005416 C = 0.004062 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2792.924360 B = 5168.363318 C = 6891.601974 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.066 3.934 3 Si 0.863 3.137 4 H -0.278 1.278 5 H -0.268 1.268 6 H -0.289 1.289 7 C -0.492 4.492 8 H 0.090 0.910 9 C 0.149 3.851 10 N -0.517 5.517 11 C 0.097 3.903 12 C -0.115 4.115 13 C -0.061 4.061 14 C -0.199 4.199 15 C 0.205 3.795 16 N -0.885 5.885 17 C -0.200 4.200 18 C -0.049 4.049 19 C 0.085 3.915 20 C -0.149 4.149 21 C -0.123 4.123 22 C -0.126 4.126 23 C -0.116 4.116 24 C -0.128 4.128 25 C -0.129 4.129 26 C -0.102 4.102 27 H 0.260 0.740 28 H -0.003 1.003 29 H 0.026 0.974 30 H 0.066 0.934 31 H 0.027 0.973 32 H 0.114 0.886 33 H 0.112 0.888 34 H 0.394 0.606 35 H 0.394 0.606 36 H 0.113 0.887 37 H 0.119 0.881 38 H 0.084 0.916 39 H 0.072 0.928 40 H 0.049 0.951 41 H 0.048 0.952 42 H 0.073 0.927 43 H 0.071 0.929 44 H 0.050 0.950 45 H 0.051 0.949 46 H 0.059 0.941 47 H 0.074 0.926 48 H 0.050 0.950 49 H 0.052 0.948 50 H 0.063 0.937 51 H 0.067 0.933 52 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.850 -7.538 0.648 14.911 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.134 4.134 3 Si 0.691 3.309 4 H -0.204 1.204 5 H -0.193 1.193 6 H -0.216 1.216 7 C -0.530 4.530 8 H 0.107 0.893 9 C 0.023 3.977 10 N -0.239 5.239 11 C -0.031 4.031 12 C -0.117 4.117 13 C -0.081 4.081 14 C -0.221 4.221 15 C 0.102 3.898 16 N -0.424 5.424 17 C -0.222 4.222 18 C -0.068 4.068 19 C -0.023 4.023 20 C -0.188 4.188 21 C -0.160 4.160 22 C -0.163 4.163 23 C -0.154 4.154 24 C -0.165 4.165 25 C -0.166 4.166 26 C -0.139 4.139 27 H 0.070 0.930 28 H 0.015 0.985 29 H 0.044 0.956 30 H 0.084 0.916 31 H 0.045 0.955 32 H 0.132 0.868 33 H 0.131 0.869 34 H 0.221 0.779 35 H 0.221 0.779 36 H 0.131 0.869 37 H 0.137 0.863 38 H 0.102 0.898 39 H 0.090 0.910 40 H 0.067 0.933 41 H 0.067 0.933 42 H 0.092 0.908 43 H 0.090 0.910 44 H 0.069 0.931 45 H 0.070 0.930 46 H 0.078 0.922 47 H 0.092 0.908 48 H 0.069 0.931 49 H 0.071 0.929 50 H 0.082 0.918 51 H 0.086 0.914 52 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 12.398 -7.713 0.904 14.630 hybrid contribution 0.789 1.818 -0.042 1.983 sum 13.188 -5.895 0.862 14.471 Atomic orbital electron populations 1.69883 1.05938 1.26341 1.52282 1.24858 0.94592 0.98321 0.95645 0.87050 0.80467 0.84977 0.78444 1.20446 1.19329 1.21557 1.21243 0.88922 0.94706 1.48147 0.89260 1.20383 0.97136 0.84597 0.95581 1.62308 1.15900 1.24565 1.21127 1.20914 0.91456 0.99689 0.91050 1.19510 1.03434 0.93434 0.95326 1.20768 0.96680 0.95993 0.94632 1.20449 1.10778 0.97947 0.92940 1.17714 0.94423 0.93601 0.84037 1.42387 1.82483 1.13926 1.03650 1.20473 1.10577 0.95043 0.96139 1.20661 0.95518 0.98854 0.91757 1.22092 0.97101 0.96790 0.86295 1.22290 1.00474 1.00301 0.95765 1.21806 1.00959 0.95378 0.97888 1.21809 0.97644 0.95093 1.01779 1.21697 0.96819 0.98126 0.98748 1.21839 0.96931 0.98185 0.99552 1.21944 0.98299 0.96409 0.99998 1.21837 0.95194 1.01086 0.95816 0.93017 0.98526 0.95620 0.91589 0.95465 0.86838 0.86946 0.77882 0.77897 0.86864 0.86309 0.89840 0.90981 0.93250 0.93329 0.90834 0.91021 0.93136 0.92986 0.92249 0.90773 0.93123 0.92907 0.91827 0.91444 0.89154 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.55 13.96 55.43 0.77 -26.78 16 2 C 0.07 1.89 5.47 -17.82 -0.10 1.79 16 3 Si 0.86 21.70 27.55 -169.99 -4.68 17.02 16 4 H -0.28 -7.01 7.11 56.52 0.40 -6.61 16 5 H -0.27 -6.48 6.43 56.52 0.36 -6.12 16 6 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 7 C -0.49 -13.47 7.43 -34.44 -0.26 -13.73 16 8 H 0.09 2.64 5.94 -52.49 -0.31 2.33 16 9 C 0.15 3.50 3.46 -4.98 -0.02 3.49 16 10 N -0.52 -10.31 4.44 -229.51 -1.02 -11.33 16 11 C 0.10 1.66 4.75 -4.97 -0.02 1.63 16 12 C -0.11 -1.99 4.82 -104.59 -0.50 -2.49 16 13 C -0.06 -1.06 7.99 -39.61 -0.32 -1.37 16 14 C -0.20 -3.13 9.90 -39.38 -0.39 -3.52 16 15 C 0.21 3.01 6.75 -83.79 -0.57 2.44 16 16 N -0.88 -9.65 9.09 32.41 0.29 -9.35 16 17 C -0.20 -2.97 9.90 -39.38 -0.39 -3.36 16 18 C -0.05 -0.78 9.71 -39.61 -0.38 -1.17 16 19 C 0.09 1.50 1.58 -67.70 -0.11 1.39 16 20 C -0.15 -2.53 3.82 -26.73 -0.10 -2.63 16 21 C -0.12 -1.71 5.48 -26.74 -0.15 -1.85 16 22 C -0.13 -1.55 5.47 -26.74 -0.15 -1.70 16 23 C -0.12 -1.36 5.59 -26.72 -0.15 -1.51 16 24 C -0.13 -1.69 5.47 -26.73 -0.15 -1.84 16 25 C -0.13 -1.99 5.48 -26.74 -0.15 -2.14 16 26 C -0.10 -1.95 3.48 -26.73 -0.09 -2.04 16 27 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 28 H 0.00 -0.07 4.47 -51.93 -0.23 -0.30 16 29 H 0.03 0.63 5.06 -51.92 -0.26 0.37 16 30 H 0.07 1.00 7.86 -51.92 -0.41 0.59 16 31 H 0.03 0.46 6.77 -51.93 -0.35 0.11 16 32 H 0.11 1.91 7.93 -52.49 -0.42 1.49 16 33 H 0.11 1.56 8.06 -52.49 -0.42 1.14 16 34 H 0.39 3.48 8.84 -40.82 -0.36 3.12 16 35 H 0.39 3.61 8.84 -40.82 -0.36 3.25 16 36 H 0.11 1.42 8.06 -52.49 -0.42 1.00 16 37 H 0.12 1.74 8.06 -52.48 -0.42 1.32 16 38 H 0.08 1.33 2.56 -51.93 -0.13 1.20 16 39 H 0.07 1.42 6.67 -51.93 -0.35 1.07 16 40 H 0.05 0.83 6.56 -51.93 -0.34 0.49 16 41 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 42 H 0.07 1.04 4.69 -51.93 -0.24 0.80 16 43 H 0.07 0.93 5.47 -51.93 -0.28 0.65 16 44 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 45 H 0.05 0.54 8.14 -51.92 -0.42 0.12 16 46 H 0.06 0.68 7.47 -51.93 -0.39 0.29 16 47 H 0.07 1.05 5.47 -51.93 -0.28 0.76 16 48 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 49 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 50 H 0.06 0.95 4.69 -51.93 -0.24 0.71 16 51 H 0.07 1.44 7.19 -51.93 -0.37 1.07 16 52 H 0.09 2.06 6.06 -51.93 -0.31 1.75 16 LS Contribution 367.97 15.07 5.55 5.55 Total: -1.00 -30.38 367.97 -11.28 -41.66 By element: Atomic # 1 Polarization: 20.06 SS G_CDS: -8.21 Total: 11.85 kcal Atomic # 6 Polarization: -24.62 SS G_CDS: -3.98 Total: -28.60 kcal Atomic # 7 Polarization: -47.51 SS G_CDS: 0.05 Total: -47.46 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -4.68 Total: 17.02 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -30.38 -11.28 -41.66 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001235664884.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.761 kcal (2) G-P(sol) polarization free energy of solvation -30.375 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.386 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.281 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.656 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.105 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds