Wall clock time and date at job start Tue Mar 31 2020 12:09:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86800 * 120.00050 * 2 1 4 4 H 1.48491 * 109.47289 * 89.99845 * 3 2 1 5 5 H 1.48500 * 109.47088 * 210.00030 * 3 2 1 6 6 H 1.48507 * 109.46945 * 329.99737 * 3 2 1 7 7 C 1.37885 * 120.00488 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99066 * 0.02562 * 7 2 1 9 9 C 1.50692 * 120.00472 * 180.02562 * 7 2 1 10 10 N 1.46898 * 109.47151 * 183.85998 * 9 7 2 11 11 C 1.46905 * 110.99562 * 199.98804 * 10 9 7 12 12 C 1.50699 * 109.47533 * 66.55807 * 11 10 9 13 13 C 1.38284 * 119.91993 * 264.53186 * 12 11 10 14 14 C 1.38109 * 120.07101 * 179.72580 * 13 12 11 15 15 C 1.38912 * 119.92317 * 0.54096 * 14 13 12 16 16 N 1.39677 * 120.07356 * 179.75191 * 15 14 13 17 17 C 1.38909 * 119.85404 * 359.72965 * 15 14 13 18 18 C 1.38105 * 119.92098 * 359.97438 * 17 15 14 19 19 C 1.46896 * 111.00072 * 76.03634 * 10 9 7 20 20 C 1.53009 * 109.47213 * 51.26395 * 19 10 9 21 21 C 1.52994 * 109.45825 * 164.04965 * 20 19 10 22 22 C 1.52981 * 109.50794 * 315.98679 * 21 20 19 23 23 C 1.53011 * 109.46740 * 112.94049 * 22 21 20 24 24 C 1.53007 * 109.42922 * 284.03817 * 23 22 21 25 25 C 1.52987 * 109.48098 * 75.96409 * 24 23 22 26 26 C 1.52995 * 109.50436 * 247.06182 * 25 24 23 27 27 H 0.96995 * 119.99973 * 359.97438 * 1 2 3 28 28 H 1.09000 * 109.46898 * 303.86175 * 9 7 2 29 29 H 1.09009 * 109.46889 * 63.85762 * 9 7 2 30 30 H 1.09010 * 109.46841 * 186.55532 * 11 10 9 31 31 H 1.08996 * 109.47053 * 306.55156 * 11 10 9 32 32 H 1.07996 * 119.96424 * 359.96926 * 13 12 11 33 33 H 1.07999 * 120.03729 * 180.27314 * 14 13 12 34 34 H 0.96998 * 119.99689 * 179.97438 * 16 15 14 35 35 H 0.96997 * 119.99955 * 359.97438 * 16 15 14 36 36 H 1.07996 * 120.03821 * 179.97438 * 17 15 14 37 37 H 1.08003 * 119.96163 * 180.02562 * 18 17 15 38 38 H 1.08995 * 109.47360 * 171.26862 * 19 10 9 39 39 H 1.08999 * 109.47414 * 284.04461 * 20 19 10 40 40 H 1.08995 * 109.47478 * 44.05619 * 20 19 10 41 41 H 1.09004 * 109.46165 * 195.97941 * 21 20 19 42 42 H 1.08994 * 109.45971 * 75.99488 * 21 20 19 43 43 H 1.08994 * 109.47350 * 352.93900 * 22 21 20 44 44 H 1.09001 * 109.47113 * 232.93664 * 22 21 20 45 45 H 1.09007 * 109.47829 * 164.05692 * 23 22 21 46 46 H 1.08991 * 109.48143 * 44.02776 * 23 22 21 47 47 H 1.08999 * 109.47050 * 315.95829 * 24 23 22 48 48 H 1.08999 * 109.46339 * 195.96561 * 24 23 22 49 49 H 1.09002 * 109.46580 * 127.05462 * 25 24 23 50 50 H 1.08997 * 109.46919 * 7.07151 * 25 24 23 51 51 H 1.09004 * 109.47482 * 284.01664 * 26 25 24 52 52 H 1.09003 * 109.47497 * 164.01141 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 1.4000 5 1 3.5467 1.4401 -0.7000 6 1 1.4465 2.6527 -0.7001 7 6 2.0046 -1.1941 0.0005 8 1 1.4646 -2.1293 0.0005 9 6 3.5116 -1.1941 0.0011 10 7 4.0013 -2.5759 -0.0916 11 6 5.3917 -2.6738 0.3722 12 6 5.4502 -2.3826 1.8497 13 6 5.7500 -1.1065 2.2898 14 6 5.7989 -0.8348 3.6431 15 6 5.5575 -1.8479 4.5623 16 7 5.6113 -1.5779 5.9317 17 6 5.2622 -3.1300 4.1168 18 6 5.2090 -3.3933 2.7621 19 6 3.8653 -3.0919 -1.4602 20 6 4.4933 -2.1018 -2.4434 21 6 4.7134 -2.7919 -3.7910 22 6 5.3018 -4.1853 -3.5613 23 6 4.2810 -5.2453 -3.9803 24 6 3.1914 -5.3531 -2.9115 25 6 2.2411 -4.1600 -3.0295 26 6 2.3825 -3.2701 -1.7931 27 1 -0.4850 0.8400 0.0004 28 1 3.8752 -0.6216 -0.8522 29 1 3.8745 -0.7410 0.9238 30 1 5.7672 -3.6800 0.1851 31 1 6.0057 -1.9511 -0.1652 32 1 5.9422 -0.3205 1.5746 33 1 6.0287 0.1631 3.9862 34 1 5.4422 -2.2860 6.5726 35 1 5.8176 -0.6822 6.2417 36 1 5.0745 -3.9200 4.8289 37 1 4.9790 -4.3899 2.4149 38 1 4.3732 -4.0531 -1.5383 39 1 3.8270 -1.2495 -2.5762 40 1 5.4501 -1.7575 -2.0509 41 1 5.4036 -2.2010 -4.3932 42 1 3.7608 -2.8814 -4.3129 43 1 5.5414 -4.3090 -2.5053 44 1 6.2085 -4.2992 -4.1554 45 1 4.7804 -6.2081 -4.0885 46 1 3.8305 -4.9604 -4.9310 47 1 3.6510 -5.3552 -1.9231 48 1 2.6328 -6.2781 -3.0543 49 1 1.2145 -4.5192 -3.1030 50 1 2.4892 -3.5848 -3.9214 51 1 1.8741 -3.7368 -0.9493 52 1 1.9354 -2.2963 -1.9932 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001235664884.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:09:51 Heat of formation + Delta-G solvation = 15.761491 kcal Electronic energy + Delta-G solvation = -28290.095760 eV Core-core repulsion = 24867.411266 eV Total energy + Delta-G solvation = -3422.684494 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.06793 -40.05851 -37.53457 -35.42538 -34.47975 -33.59881 -32.51206 -31.71128 -30.66812 -29.22977 -26.91109 -26.46223 -25.13468 -23.76277 -23.26168 -22.18146 -21.87788 -21.20106 -19.61645 -18.72169 -17.90686 -17.63220 -17.24168 -16.68869 -16.23962 -15.99597 -15.37148 -15.05535 -15.00672 -14.86172 -14.83604 -14.50340 -14.30618 -14.20634 -14.03202 -13.98566 -13.85623 -13.37981 -13.14898 -12.93679 -12.52063 -12.43625 -12.34388 -12.04470 -11.97212 -11.92767 -11.74249 -11.65020 -11.56700 -11.52195 -11.29602 -11.20432 -10.92308 -10.70630 -10.49875 -10.42256 -9.70185 -8.76451 -8.24461 -8.16765 -6.11578 0.64328 0.77899 1.30610 1.31418 1.40267 2.37872 2.96297 3.12053 3.16482 3.52883 3.85042 4.01524 4.04043 4.11035 4.15172 4.24995 4.32536 4.35536 4.39966 4.43593 4.46112 4.54194 4.62516 4.63574 4.71802 4.86671 4.87728 4.95650 5.03072 5.08186 5.11953 5.13672 5.18919 5.22845 5.24798 5.26727 5.31451 5.38557 5.40809 5.48877 5.49682 5.59363 5.62895 5.68585 5.72508 5.80287 5.85300 5.96197 6.09775 6.19664 6.64309 6.69291 6.83434 6.93441 7.08367 7.46960 8.99094 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.010023 B = 0.005416 C = 0.004062 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2792.924360 B = 5168.363318 C = 6891.601974 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.951 5.951 2 C 0.007 3.993 3 Si 0.923 3.077 4 H -0.274 1.274 5 H -0.254 1.254 6 H -0.287 1.287 7 C -0.481 4.481 8 H 0.054 0.946 9 C 0.165 3.835 10 N -0.532 5.532 11 C 0.101 3.899 12 C -0.140 4.140 13 C -0.079 4.079 14 C -0.214 4.214 15 C 0.206 3.794 16 N -0.870 5.870 17 C -0.207 4.207 18 C -0.058 4.058 19 C 0.088 3.912 20 C -0.143 4.143 21 C -0.118 4.118 22 C -0.122 4.122 23 C -0.112 4.112 24 C -0.123 4.123 25 C -0.123 4.123 26 C -0.091 4.091 27 H 0.260 0.740 28 H -0.007 1.007 29 H 0.021 0.979 30 H 0.089 0.911 31 H 0.029 0.971 32 H 0.108 0.892 33 H 0.127 0.873 34 H 0.406 0.594 35 H 0.404 0.596 36 H 0.137 0.863 37 H 0.129 0.871 38 H 0.111 0.889 39 H 0.035 0.965 40 H 0.053 0.947 41 H 0.062 0.938 42 H 0.069 0.931 43 H 0.066 0.934 44 H 0.072 0.928 45 H 0.074 0.926 46 H 0.065 0.935 47 H 0.066 0.934 48 H 0.065 0.935 49 H 0.048 0.952 50 H 0.071 0.929 51 H 0.034 0.966 52 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.594 -8.696 0.596 17.865 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.594 5.594 2 C -0.188 4.188 3 Si 0.748 3.252 4 H -0.199 1.199 5 H -0.178 1.178 6 H -0.214 1.214 7 C -0.520 4.520 8 H 0.072 0.928 9 C 0.038 3.962 10 N -0.254 5.254 11 C -0.026 4.026 12 C -0.142 4.142 13 C -0.099 4.099 14 C -0.236 4.236 15 C 0.101 3.899 16 N -0.411 5.411 17 C -0.230 4.230 18 C -0.077 4.077 19 C -0.019 4.019 20 C -0.182 4.182 21 C -0.156 4.156 22 C -0.160 4.160 23 C -0.149 4.149 24 C -0.160 4.160 25 C -0.161 4.161 26 C -0.129 4.129 27 H 0.069 0.931 28 H 0.010 0.990 29 H 0.039 0.961 30 H 0.107 0.893 31 H 0.047 0.953 32 H 0.126 0.874 33 H 0.145 0.855 34 H 0.236 0.764 35 H 0.233 0.767 36 H 0.155 0.845 37 H 0.147 0.853 38 H 0.129 0.871 39 H 0.054 0.946 40 H 0.071 0.929 41 H 0.080 0.920 42 H 0.087 0.913 43 H 0.084 0.916 44 H 0.091 0.909 45 H 0.093 0.907 46 H 0.084 0.916 47 H 0.084 0.916 48 H 0.083 0.917 49 H 0.066 0.934 50 H 0.090 0.910 51 H 0.053 0.947 52 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 15.172 -8.881 0.880 17.602 hybrid contribution -0.103 2.095 0.064 2.099 sum 15.069 -6.786 0.945 16.553 Atomic orbital electron populations 1.70035 1.07668 1.27114 1.54614 1.25614 0.95309 1.01974 0.95941 0.86068 0.79712 0.80679 0.78691 1.19919 1.17777 1.21352 1.21461 0.91135 0.93250 1.46129 0.92801 1.20043 0.94297 0.86926 0.94932 1.62186 1.18339 1.22128 1.22783 1.20945 0.89379 1.01046 0.91204 1.19617 1.05093 0.94023 0.95508 1.20881 0.97557 0.96016 0.95422 1.20676 1.11121 0.99104 0.92737 1.17853 0.93339 0.93325 0.85419 1.42354 1.81250 1.15046 1.02441 1.20774 1.10089 0.95884 0.96210 1.20875 0.95360 0.99111 0.92346 1.22161 0.96048 0.98155 0.85515 1.22174 0.99458 0.99053 0.97545 1.21784 1.01342 0.96652 0.95837 1.21783 0.98575 0.93738 1.01867 1.21679 0.96045 0.99114 0.98091 1.21785 0.97038 0.97276 0.99892 1.21889 0.99116 0.96959 0.98132 1.21590 0.95909 0.98996 0.96418 0.93144 0.98952 0.96059 0.89279 0.95271 0.87353 0.85492 0.76442 0.76712 0.84516 0.85325 0.87140 0.94609 0.92875 0.91968 0.91280 0.91558 0.90898 0.90686 0.91636 0.91574 0.91668 0.93351 0.91040 0.94743 0.93930 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.73 13.96 21.45 0.30 -60.43 16 2 C 0.01 0.43 5.47 84.66 0.46 0.89 16 3 Si 0.92 45.96 27.55 68.60 1.89 47.85 16 4 H -0.27 -13.34 7.11 99.48 0.71 -12.63 16 5 H -0.25 -11.90 6.43 99.48 0.64 -11.26 16 6 H -0.29 -14.14 7.11 99.48 0.71 -13.43 16 7 C -0.48 -27.70 7.43 25.60 0.19 -27.51 16 8 H 0.05 3.43 5.94 -2.91 -0.02 3.41 16 9 C 0.17 7.96 3.46 85.55 0.30 8.26 16 10 N -0.53 -21.52 4.44 -880.02 -3.90 -25.43 16 11 C 0.10 3.39 4.75 85.56 0.41 3.80 16 12 C -0.14 -4.76 4.82 -19.84 -0.10 -4.86 16 13 C -0.08 -2.70 7.99 22.25 0.18 -2.52 16 14 C -0.21 -6.49 9.90 22.40 0.22 -6.27 16 15 C 0.21 5.65 6.75 38.21 0.26 5.91 16 16 N -0.87 -16.77 9.09 -51.37 -0.47 -17.24 16 17 C -0.21 -5.77 9.90 22.40 0.22 -5.55 16 18 C -0.06 -1.79 9.71 22.25 0.22 -1.58 16 19 C 0.09 3.14 1.58 44.92 0.07 3.21 16 20 C -0.14 -4.83 3.82 30.60 0.12 -4.71 16 21 C -0.12 -3.08 5.48 30.59 0.17 -2.91 16 22 C -0.12 -2.59 5.47 30.59 0.17 -2.43 16 23 C -0.11 -2.22 5.59 30.60 0.17 -2.05 16 24 C -0.12 -3.00 5.47 30.59 0.17 -2.83 16 25 C -0.12 -3.83 5.48 30.59 0.17 -3.66 16 26 C -0.09 -3.68 3.48 30.60 0.11 -3.57 16 27 H 0.26 15.69 8.31 -92.71 -0.77 14.92 16 28 H -0.01 -0.35 4.47 -2.39 -0.01 -0.36 16 29 H 0.02 1.06 5.06 -2.38 -0.01 1.05 16 30 H 0.09 2.52 7.86 -2.38 -0.02 2.51 16 31 H 0.03 0.96 6.77 -2.39 -0.02 0.95 16 32 H 0.11 3.66 7.93 -2.91 -0.02 3.64 16 33 H 0.13 3.34 8.06 -2.91 -0.02 3.32 16 34 H 0.41 6.01 8.84 -92.71 -0.82 5.19 16 35 H 0.40 6.37 8.84 -92.71 -0.82 5.55 16 36 H 0.14 3.07 8.06 -2.91 -0.02 3.04 16 37 H 0.13 3.61 8.06 -2.91 -0.02 3.58 16 38 H 0.11 3.37 2.56 -2.39 -0.01 3.36 16 39 H 0.04 1.45 6.67 -2.39 -0.02 1.43 16 40 H 0.05 1.74 6.56 -2.39 -0.02 1.72 16 41 H 0.06 1.46 8.14 -2.38 -0.02 1.44 16 42 H 0.07 1.86 4.69 -2.39 -0.01 1.85 16 43 H 0.07 1.49 5.47 -2.39 -0.01 1.48 16 44 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 45 H 0.07 1.22 8.14 -2.38 -0.02 1.20 16 46 H 0.06 1.26 7.47 -2.39 -0.02 1.25 16 47 H 0.07 1.74 5.47 -2.39 -0.01 1.72 16 48 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 49 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 50 H 0.07 2.12 4.69 -2.39 -0.01 2.11 16 51 H 0.03 1.58 7.19 -2.38 -0.02 1.56 16 52 H 0.04 2.09 6.06 -2.39 -0.01 2.08 16 Total: -1.00 -69.34 367.97 0.55 -68.79 By element: Atomic # 1 Polarization: 35.60 SS G_CDS: -0.76 Total: 34.84 kcal Atomic # 6 Polarization: -51.89 SS G_CDS: 3.49 Total: -48.40 kcal Atomic # 7 Polarization: -99.02 SS G_CDS: -4.07 Total: -103.09 kcal Atomic # 14 Polarization: 45.96 SS G_CDS: 1.89 Total: 47.85 kcal Total: -69.34 0.55 -68.79 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001235664884.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.553 kcal (2) G-P(sol) polarization free energy of solvation -69.342 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.211 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.550 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.792 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.761 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds