Wall clock time and date at job start Tue Mar 31 2020 10:57:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 120.00112 * 2 1 4 4 H 1.48500 * 109.46986 * 270.00107 * 3 2 1 5 5 H 1.48496 * 109.47029 * 30.00124 * 3 2 1 6 6 H 1.48499 * 109.47352 * 149.99954 * 3 2 1 7 7 C 1.37885 * 120.00035 * 179.97438 * 2 1 3 8 8 H 1.07991 * 119.99806 * 0.02562 * 7 2 1 9 9 C 1.50697 * 119.99686 * 179.72339 * 7 2 1 10 10 N 1.46895 * 109.47429 * 300.00221 * 9 7 2 11 11 C 1.46901 * 111.00106 * 293.95424 * 10 9 7 12 12 C 1.50700 * 109.46928 * 66.04389 * 11 10 9 13 13 C 1.38672 * 120.41680 * 90.00074 * 12 11 10 14 14 C 1.38631 * 118.42047 * 180.02562 * 13 12 11 15 15 C 1.38228 * 119.15989 * 0.02562 * 14 13 12 16 16 N 1.31849 * 120.76289 * 359.97438 * 15 14 13 17 17 C 1.31881 * 121.72920 * 359.70872 * 16 15 14 18 18 C 1.46903 * 110.99958 * 170.00439 * 10 9 7 19 19 H 1.09001 * 109.53134 * 179.10670 * 18 10 9 20 20 C 1.53098 * 109.53622 * 58.95139 * 18 10 9 21 21 C 1.53002 * 109.46873 * 180.68650 * 20 18 10 22 22 N 1.46984 * 109.53061 * 60.99748 * 21 20 18 23 23 C 1.46456 * 111.06321 * 300.69568 * 22 21 20 24 24 C 1.53508 * 113.66814 * 286.07803 * 23 22 21 25 25 N 1.48046 * 86.06366 * 222.08394 * 24 23 22 26 26 C 1.48030 * 90.82364 * 24.39101 * 25 24 23 27 27 C 1.52693 * 113.20402 * 57.55660 * 23 22 21 28 28 H 0.97000 * 119.99706 * 359.97438 * 1 2 3 29 29 H 1.09001 * 109.47048 * 60.00389 * 9 7 2 30 30 H 1.09006 * 109.46970 * 179.97438 * 9 7 2 31 31 H 1.09001 * 109.47497 * 186.04831 * 11 10 9 32 32 H 1.09008 * 109.47226 * 306.04743 * 11 10 9 33 33 H 1.08001 * 120.78974 * 0.02704 * 13 12 11 34 34 H 1.07999 * 120.41555 * 180.02562 * 14 13 12 35 35 H 1.08000 * 119.61411 * 180.02562 * 15 14 13 36 36 H 1.07999 * 119.61997 * 180.30493 * 17 16 15 37 37 H 1.08993 * 109.47185 * 300.68809 * 20 18 10 38 38 H 1.09003 * 109.46939 * 60.69375 * 20 18 10 39 39 H 1.08995 * 109.46064 * 181.01365 * 21 20 18 40 40 H 1.09000 * 109.46220 * 300.98271 * 21 20 18 41 41 H 1.00895 * 110.99972 * 64.70207 * 22 21 20 42 42 H 1.09007 * 113.77584 * 336.36801 * 24 23 22 43 43 H 1.08995 * 113.78009 * 107.79256 * 24 23 22 44 44 H 1.00893 * 110.99819 * 137.31362 * 25 24 23 45 45 H 1.08997 * 113.77997 * 221.32623 * 26 25 24 46 46 H 1.08995 * 113.78166 * 89.89772 * 26 25 24 47 47 H 1.09000 * 109.53820 * 184.90870 * 27 23 22 48 48 H 1.09002 * 109.53059 * 64.67698 * 27 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6526 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1941 0.0005 8 1 1.4646 -2.1293 0.0005 9 6 3.5115 -1.1940 -0.0058 10 7 3.9962 -0.5049 -1.2091 11 6 3.6417 -1.2528 -2.4228 12 6 2.1441 -1.2571 -2.5907 13 6 1.5154 -0.2518 -3.3098 14 6 0.1357 -0.2961 -3.4378 15 6 -0.5625 -1.3332 -2.8482 16 7 0.0689 -2.2723 -2.1715 17 6 1.3805 -2.2655 -2.0344 18 6 5.4454 -0.2755 -1.1367 19 1 5.7815 0.2219 -2.0465 20 6 6.1693 -1.6164 -0.9889 21 6 7.6772 -1.3743 -0.8964 22 7 7.9710 -0.5495 0.2843 23 6 7.2799 0.7397 0.2109 24 6 7.8993 1.7142 -0.8006 25 7 7.6922 2.7560 0.2306 26 6 7.7121 1.7322 1.2995 27 6 5.7649 0.6034 0.0775 28 1 -0.4850 0.8401 0.0004 29 1 3.8785 -0.6777 0.8813 30 1 3.8749 -2.2217 -0.0039 31 1 4.1032 -0.7791 -3.2893 32 1 4.0004 -2.2784 -2.3354 33 1 2.0869 0.5467 -3.7594 34 1 -0.3870 0.4700 -3.9912 35 1 -1.6374 -1.3752 -2.9437 36 1 1.8630 -3.0547 -1.4769 37 1 5.8255 -2.1170 -0.0838 38 1 5.9543 -2.2427 -1.8547 39 1 8.1937 -2.3301 -0.8092 40 1 8.0179 -0.8580 -1.7939 41 1 7.7350 -1.0385 1.1347 42 1 8.9484 1.5137 -1.0184 43 1 7.2972 1.8579 -1.6978 44 1 8.4949 3.3637 0.2968 45 1 6.9610 1.8902 2.0734 46 1 8.7057 1.5370 1.7028 47 1 5.3209 1.5894 -0.0593 48 1 5.3599 0.1419 0.9781 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001246553511.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:57:52 Heat of formation + Delta-G solvation = 105.277289 kcal Electronic energy + Delta-G solvation = -28806.292391 eV Core-core repulsion = 25283.949250 eV Total energy + Delta-G solvation = -3522.343141 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.196 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.67251 -39.20725 -37.59114 -35.23001 -32.50457 -31.88744 -30.75329 -29.84436 -29.30193 -27.82395 -26.16331 -24.97034 -23.97522 -22.79221 -22.29328 -22.10840 -20.79908 -19.36222 -18.57573 -17.13217 -16.76913 -15.97497 -15.67887 -15.33468 -15.07894 -14.89008 -14.49387 -13.98407 -13.82689 -13.82136 -13.38086 -13.18449 -13.15762 -12.91229 -12.34029 -12.29599 -12.21996 -12.09232 -11.86977 -11.53467 -11.49372 -11.38055 -10.94185 -10.82849 -10.57341 -10.50537 -10.25458 -10.03557 -9.88783 -9.65729 -9.19836 -8.99970 -8.65161 -8.45221 -8.38966 -8.14160 -7.54156 -7.27699 -5.98644 -3.93700 2.44378 2.61350 3.57164 3.61456 3.71337 4.00063 4.18428 4.32099 4.62366 4.68823 4.98931 5.06513 5.11895 5.19626 5.30367 5.33473 5.36580 5.50470 5.56800 5.57646 5.65258 5.72314 5.74286 5.77535 5.83510 5.89923 5.99675 6.02682 6.03907 6.12358 6.14281 6.19590 6.25084 6.40483 6.45581 6.53200 6.71518 6.80034 6.90732 6.95155 7.05126 7.15832 7.29540 7.31468 7.46500 7.58719 7.86394 7.99091 8.10943 8.49140 8.89977 9.34072 9.61644 11.04734 Molecular weight = 316.20amu Principal moments of inertia in cm(-1) A = 0.019249 B = 0.005155 C = 0.004668 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1454.299595 B = 5429.807429 C = 5996.559013 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.865 5.865 2 C 0.097 3.903 3 Si 0.911 3.089 4 H -0.280 1.280 5 H -0.324 1.324 6 H -0.259 1.259 7 C -0.528 4.528 8 H 0.087 0.913 9 C 0.150 3.850 10 N -0.526 5.526 11 C 0.117 3.883 12 C -0.105 4.105 13 C -0.078 4.078 14 C -0.206 4.206 15 C 0.122 3.878 16 N -0.499 5.499 17 C 0.201 3.799 18 C 0.086 3.914 19 H 0.068 0.932 20 C -0.189 4.189 21 C 0.063 3.937 22 N -0.673 5.673 23 C 0.084 3.916 24 C 0.021 3.979 25 N -0.631 5.631 26 C 0.017 3.983 27 C -0.116 4.116 28 H 0.260 0.740 29 H 0.037 0.963 30 H 0.002 0.998 31 H 0.058 0.942 32 H 0.031 0.969 33 H 0.105 0.895 34 H 0.105 0.895 35 H 0.127 0.873 36 H 0.130 0.870 37 H 0.068 0.932 38 H 0.066 0.934 39 H 0.070 0.930 40 H 0.069 0.931 41 H 0.341 0.659 42 H 0.070 0.930 43 H 0.085 0.915 44 H 0.317 0.683 45 H 0.086 0.914 46 H 0.072 0.928 47 H 0.085 0.915 48 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.431 -0.014 -3.480 14.845 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.499 5.499 2 C -0.111 4.111 3 Si 0.744 3.256 4 H -0.206 1.206 5 H -0.254 1.254 6 H -0.184 1.184 7 C -0.565 4.565 8 H 0.104 0.896 9 C 0.026 3.974 10 N -0.250 5.250 11 C -0.011 4.011 12 C -0.107 4.107 13 C -0.104 4.104 14 C -0.227 4.227 15 C -0.033 4.033 16 N -0.208 5.208 17 C 0.043 3.957 18 C -0.023 4.023 19 H 0.086 0.914 20 C -0.230 4.230 21 C -0.067 4.067 22 N -0.302 5.302 23 C -0.009 4.009 24 C -0.110 4.110 25 N -0.256 5.256 26 C -0.114 4.114 27 C -0.155 4.155 28 H 0.069 0.931 29 H 0.054 0.946 30 H 0.020 0.980 31 H 0.077 0.923 32 H 0.049 0.951 33 H 0.123 0.877 34 H 0.123 0.877 35 H 0.144 0.856 36 H 0.147 0.853 37 H 0.086 0.914 38 H 0.085 0.915 39 H 0.088 0.912 40 H 0.087 0.913 41 H 0.158 0.842 42 H 0.088 0.912 43 H 0.103 0.897 44 H 0.129 0.871 45 H 0.105 0.895 46 H 0.090 0.910 47 H 0.103 0.897 48 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 13.315 0.393 -3.465 13.764 hybrid contribution 1.174 0.605 0.112 1.325 sum 14.489 0.998 -3.353 14.905 Atomic orbital electron populations 1.69997 1.06566 1.26891 1.46404 1.24880 0.94371 0.99400 0.92488 0.86320 0.79359 0.81614 0.78350 1.20573 1.25431 1.18407 1.21134 0.88624 0.94762 1.52009 0.89562 1.20325 0.96833 0.91925 0.88309 1.62602 1.09011 1.49438 1.03953 1.20623 0.92338 0.95556 0.92553 1.20105 0.95468 0.96401 0.98723 1.20845 0.94259 0.96747 0.98511 1.21494 0.94865 1.00638 1.05664 1.21989 0.98464 0.90526 0.92355 1.67464 1.09876 1.28116 1.15385 1.21828 0.89310 0.95583 0.88962 1.21688 0.89260 0.93590 0.97791 0.91427 1.22934 0.97083 1.00146 1.02832 1.21924 0.94108 0.96915 0.93755 1.60960 1.59173 1.04724 1.05364 1.22487 0.93282 0.88778 0.96309 1.23730 0.99949 0.90863 0.96463 1.66896 1.42804 1.11871 1.04005 1.23775 1.01117 0.91106 0.95412 1.22089 0.92677 1.01950 0.98787 0.93093 0.94556 0.97971 0.92310 0.95067 0.87704 0.87679 0.85592 0.85299 0.91361 0.91533 0.91172 0.91261 0.84153 0.91207 0.89668 0.87071 0.89531 0.90983 0.89680 0.90897 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -24.72 13.67 55.43 0.76 -23.97 16 2 C 0.10 2.59 4.35 -17.82 -0.08 2.51 16 3 Si 0.91 22.82 25.48 -169.99 -4.33 18.49 16 4 H -0.28 -7.20 7.11 56.52 0.40 -6.80 16 5 H -0.32 -8.64 7.11 56.52 0.40 -8.24 16 6 H -0.26 -6.08 4.05 56.52 0.23 -5.85 16 7 C -0.53 -13.37 5.67 -34.44 -0.20 -13.56 16 8 H 0.09 2.41 5.77 -52.49 -0.30 2.11 16 9 C 0.15 3.20 3.46 -4.98 -0.02 3.18 16 10 N -0.53 -10.10 2.15 -229.29 -0.49 -10.59 16 11 C 0.12 2.13 4.58 -4.98 -0.02 2.11 16 12 C -0.10 -2.18 3.55 -104.48 -0.37 -2.55 16 13 C -0.08 -1.62 9.69 -39.28 -0.38 -2.00 16 14 C -0.21 -4.26 10.11 -39.44 -0.40 -4.66 16 15 C 0.12 2.65 10.90 -17.55 -0.19 2.45 16 16 N -0.50 -11.66 10.36 -13.25 -0.14 -11.80 16 17 C 0.20 4.46 6.55 -17.55 -0.12 4.34 16 18 C 0.09 1.36 2.21 -67.53 -0.15 1.21 16 19 H 0.07 1.06 7.50 -51.93 -0.39 0.67 16 20 C -0.19 -2.52 4.64 -26.68 -0.12 -2.64 16 21 C 0.06 0.70 6.46 -3.78 -0.02 0.68 16 22 N -0.67 -7.63 6.56 -102.54 -0.67 -8.31 16 23 C 0.08 1.06 0.97 -134.81 -0.13 0.93 16 24 C 0.02 0.25 7.63 -2.94 -0.02 0.22 16 25 N -0.63 -7.77 8.36 -118.68 -0.99 -8.76 16 26 C 0.02 0.19 8.26 -2.93 -0.02 0.17 16 27 C -0.12 -1.86 3.07 -26.75 -0.08 -1.94 16 28 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 29 H 0.04 0.81 4.84 -51.93 -0.25 0.55 16 30 H 0.00 0.04 6.78 -51.93 -0.35 -0.31 16 31 H 0.06 0.98 7.96 -51.93 -0.41 0.56 16 32 H 0.03 0.53 6.85 -51.92 -0.36 0.18 16 33 H 0.10 2.06 8.06 -52.49 -0.42 1.63 16 34 H 0.11 1.91 8.06 -52.49 -0.42 1.49 16 35 H 0.13 2.47 8.06 -52.49 -0.42 2.05 16 36 H 0.13 2.80 7.09 -52.49 -0.37 2.43 16 37 H 0.07 0.99 6.59 -51.93 -0.34 0.65 16 38 H 0.07 0.88 6.79 -51.93 -0.35 0.52 16 39 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 40 H 0.07 0.77 7.80 -51.93 -0.40 0.36 16 41 H 0.34 3.75 8.89 -39.29 -0.35 3.40 16 42 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 43 H 0.08 1.10 7.55 -51.93 -0.39 0.71 16 44 H 0.32 3.17 8.91 -39.30 -0.35 2.82 16 45 H 0.09 1.09 8.09 -51.93 -0.42 0.67 16 46 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 47 H 0.08 1.61 6.57 -51.93 -0.34 1.27 16 48 H 0.07 1.28 5.87 -51.93 -0.31 0.98 16 LS Contribution 347.72 15.07 5.24 5.24 Total: -1.00 -28.95 347.72 -10.49 -39.44 By element: Atomic # 1 Polarization: 17.33 SS G_CDS: -7.54 Total: 9.79 kcal Atomic # 6 Polarization: -7.22 SS G_CDS: -2.33 Total: -9.54 kcal Atomic # 7 Polarization: -61.88 SS G_CDS: -1.54 Total: -63.42 kcal Atomic # 14 Polarization: 22.82 SS G_CDS: -4.33 Total: 18.49 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -28.95 -10.49 -39.44 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001246553511.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 144.716 kcal (2) G-P(sol) polarization free energy of solvation -28.946 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 115.770 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.492 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.438 kcal (6) G-S(sol) free energy of system = (1) + (5) 105.277 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds