Wall clock time and date at job start Tue Mar 31 2020 10:57:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 120.00112 * 2 1 4 4 H 1.48500 * 109.46986 * 270.00107 * 3 2 1 5 5 H 1.48496 * 109.47029 * 30.00124 * 3 2 1 6 6 H 1.48499 * 109.47352 * 149.99954 * 3 2 1 7 7 C 1.37885 * 120.00035 * 179.97438 * 2 1 3 8 8 H 1.07991 * 119.99806 * 0.02562 * 7 2 1 9 9 C 1.50697 * 119.99686 * 179.72339 * 7 2 1 10 10 N 1.46895 * 109.47429 * 300.00221 * 9 7 2 11 11 C 1.46901 * 111.00106 * 293.95424 * 10 9 7 12 12 C 1.50700 * 109.46928 * 66.04389 * 11 10 9 13 13 C 1.38672 * 120.41680 * 90.00074 * 12 11 10 14 14 C 1.38631 * 118.42047 * 180.02562 * 13 12 11 15 15 C 1.38228 * 119.15989 * 0.02562 * 14 13 12 16 16 N 1.31849 * 120.76289 * 359.97438 * 15 14 13 17 17 C 1.31881 * 121.72920 * 359.70872 * 16 15 14 18 18 C 1.46903 * 110.99958 * 170.00439 * 10 9 7 19 19 H 1.09001 * 109.53134 * 179.10670 * 18 10 9 20 20 C 1.53098 * 109.53622 * 58.95139 * 18 10 9 21 21 C 1.53002 * 109.46873 * 180.68650 * 20 18 10 22 22 N 1.46984 * 109.53061 * 60.99748 * 21 20 18 23 23 C 1.46456 * 111.06321 * 300.69568 * 22 21 20 24 24 C 1.53508 * 113.66814 * 286.07803 * 23 22 21 25 25 N 1.48046 * 86.06366 * 222.08394 * 24 23 22 26 26 C 1.48030 * 90.82364 * 24.39101 * 25 24 23 27 27 C 1.52693 * 113.20402 * 57.55660 * 23 22 21 28 28 H 0.97000 * 119.99706 * 359.97438 * 1 2 3 29 29 H 1.09001 * 109.47048 * 60.00389 * 9 7 2 30 30 H 1.09006 * 109.46970 * 179.97438 * 9 7 2 31 31 H 1.09001 * 109.47497 * 186.04831 * 11 10 9 32 32 H 1.09008 * 109.47226 * 306.04743 * 11 10 9 33 33 H 1.08001 * 120.78974 * 0.02704 * 13 12 11 34 34 H 1.07999 * 120.41555 * 180.02562 * 14 13 12 35 35 H 1.08000 * 119.61411 * 180.02562 * 15 14 13 36 36 H 1.07999 * 119.61997 * 180.30493 * 17 16 15 37 37 H 1.08993 * 109.47185 * 300.68809 * 20 18 10 38 38 H 1.09003 * 109.46939 * 60.69375 * 20 18 10 39 39 H 1.08995 * 109.46064 * 181.01365 * 21 20 18 40 40 H 1.09000 * 109.46220 * 300.98271 * 21 20 18 41 41 H 1.00895 * 110.99972 * 64.70207 * 22 21 20 42 42 H 1.09007 * 113.77584 * 336.36801 * 24 23 22 43 43 H 1.08995 * 113.78009 * 107.79256 * 24 23 22 44 44 H 1.00893 * 110.99819 * 137.31362 * 25 24 23 45 45 H 1.08997 * 113.77997 * 221.32623 * 26 25 24 46 46 H 1.08995 * 113.78166 * 89.89772 * 26 25 24 47 47 H 1.09000 * 109.53820 * 184.90870 * 27 23 22 48 48 H 1.09002 * 109.53059 * 64.67698 * 27 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6526 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1941 0.0005 8 1 1.4646 -2.1293 0.0005 9 6 3.5115 -1.1940 -0.0058 10 7 3.9962 -0.5049 -1.2091 11 6 3.6417 -1.2528 -2.4228 12 6 2.1441 -1.2571 -2.5907 13 6 1.5154 -0.2518 -3.3098 14 6 0.1357 -0.2961 -3.4378 15 6 -0.5625 -1.3332 -2.8482 16 7 0.0689 -2.2723 -2.1715 17 6 1.3805 -2.2655 -2.0344 18 6 5.4454 -0.2755 -1.1367 19 1 5.7815 0.2219 -2.0465 20 6 6.1693 -1.6164 -0.9889 21 6 7.6772 -1.3743 -0.8964 22 7 7.9710 -0.5495 0.2843 23 6 7.2799 0.7397 0.2109 24 6 7.8993 1.7142 -0.8006 25 7 7.6922 2.7560 0.2306 26 6 7.7121 1.7322 1.2995 27 6 5.7649 0.6034 0.0775 28 1 -0.4850 0.8401 0.0004 29 1 3.8785 -0.6777 0.8813 30 1 3.8749 -2.2217 -0.0039 31 1 4.1032 -0.7791 -3.2893 32 1 4.0004 -2.2784 -2.3354 33 1 2.0869 0.5467 -3.7594 34 1 -0.3870 0.4700 -3.9912 35 1 -1.6374 -1.3752 -2.9437 36 1 1.8630 -3.0547 -1.4769 37 1 5.8255 -2.1170 -0.0838 38 1 5.9543 -2.2427 -1.8547 39 1 8.1937 -2.3301 -0.8092 40 1 8.0179 -0.8580 -1.7939 41 1 7.7350 -1.0385 1.1347 42 1 8.9484 1.5137 -1.0184 43 1 7.2972 1.8579 -1.6978 44 1 8.4949 3.3637 0.2968 45 1 6.9610 1.8902 2.0734 46 1 8.7057 1.5370 1.7028 47 1 5.3209 1.5894 -0.0593 48 1 5.3599 0.1419 0.9781 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001246553511.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:57:52 Heat of formation + Delta-G solvation = 82.472141 kcal Electronic energy + Delta-G solvation = -28807.281297 eV Core-core repulsion = 25283.949250 eV Total energy + Delta-G solvation = -3523.332046 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.196 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.76233 -40.79145 -38.93263 -36.41397 -34.42122 -33.40796 -32.39651 -30.93482 -30.82409 -29.48084 -27.08334 -26.30965 -25.20325 -24.29986 -24.02148 -23.40627 -22.31535 -20.74888 -19.66453 -18.69499 -17.97593 -17.59676 -16.97225 -16.91588 -16.54272 -16.30140 -15.94106 -15.37807 -15.17358 -14.99346 -14.91443 -14.62064 -14.50085 -14.11024 -14.02375 -13.77151 -13.54049 -13.46490 -13.21822 -13.00359 -12.87877 -12.65811 -12.55356 -12.14697 -12.10021 -11.96172 -11.72506 -11.62825 -11.36448 -11.10688 -11.06818 -10.58609 -10.15294 -9.88849 -9.85589 -9.50826 -9.22076 -8.79593 -8.06368 -5.99354 0.77510 0.92836 1.53120 1.57517 1.67656 2.58309 3.00907 3.17171 3.24193 3.28327 3.40995 3.71501 3.92753 3.98728 4.05658 4.09420 4.19066 4.26147 4.31762 4.32997 4.42527 4.44157 4.53776 4.56719 4.58836 4.69564 4.74508 4.75583 4.81641 4.91415 4.93255 4.96627 5.02946 5.10092 5.15433 5.18284 5.21312 5.25866 5.30187 5.40216 5.62395 5.67318 5.81742 6.08217 6.16207 6.33525 6.35166 6.41890 6.45835 6.64083 6.88812 7.56357 7.63981 8.98553 Molecular weight = 316.20amu Principal moments of inertia in cm(-1) A = 0.019249 B = 0.005155 C = 0.004668 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1454.299595 B = 5429.807429 C = 5996.559013 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.067 3.933 3 Si 0.951 3.049 4 H -0.286 1.286 5 H -0.350 1.350 6 H -0.241 1.241 7 C -0.514 4.514 8 H 0.056 0.944 9 C 0.166 3.834 10 N -0.541 5.541 11 C 0.119 3.881 12 C -0.105 4.105 13 C -0.088 4.088 14 C -0.203 4.203 15 C 0.102 3.898 16 N -0.522 5.522 17 C 0.186 3.814 18 C 0.087 3.913 19 H 0.077 0.923 20 C -0.179 4.179 21 C 0.069 3.931 22 N -0.663 5.663 23 C 0.086 3.914 24 C 0.029 3.971 25 N -0.651 5.651 26 C 0.022 3.978 27 C -0.110 4.110 28 H 0.250 0.750 29 H 0.030 0.970 30 H 0.011 0.989 31 H 0.081 0.919 32 H 0.047 0.953 33 H 0.120 0.880 34 H 0.130 0.870 35 H 0.140 0.860 36 H 0.126 0.874 37 H 0.055 0.945 38 H 0.073 0.927 39 H 0.090 0.910 40 H 0.077 0.923 41 H 0.344 0.656 42 H 0.088 0.912 43 H 0.075 0.925 44 H 0.331 0.669 45 H 0.073 0.927 46 H 0.093 0.907 47 H 0.054 0.946 48 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.639 0.040 -4.480 18.199 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.136 4.136 3 Si 0.785 3.215 4 H -0.213 1.213 5 H -0.283 1.283 6 H -0.165 1.165 7 C -0.552 4.552 8 H 0.074 0.926 9 C 0.041 3.959 10 N -0.266 5.266 11 C -0.009 4.009 12 C -0.108 4.108 13 C -0.114 4.114 14 C -0.223 4.223 15 C -0.052 4.052 16 N -0.232 5.232 17 C 0.028 3.972 18 C -0.021 4.021 19 H 0.095 0.905 20 C -0.220 4.220 21 C -0.061 4.061 22 N -0.293 5.293 23 C -0.007 4.007 24 C -0.101 4.101 25 N -0.277 5.277 26 C -0.108 4.108 27 C -0.150 4.150 28 H 0.059 0.941 29 H 0.048 0.952 30 H 0.029 0.971 31 H 0.100 0.900 32 H 0.065 0.935 33 H 0.138 0.862 34 H 0.148 0.852 35 H 0.157 0.843 36 H 0.143 0.857 37 H 0.074 0.926 38 H 0.092 0.908 39 H 0.108 0.892 40 H 0.095 0.905 41 H 0.162 0.838 42 H 0.107 0.893 43 H 0.093 0.907 44 H 0.144 0.856 45 H 0.091 0.909 46 H 0.111 0.889 47 H 0.073 0.927 48 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 16.573 0.433 -4.466 17.170 hybrid contribution 0.167 0.549 0.376 0.686 sum 16.740 0.982 -4.090 17.260 Atomic orbital electron populations 1.70122 1.07672 1.26388 1.49718 1.25226 0.94418 1.00987 0.93006 0.85704 0.79027 0.79122 0.77652 1.21266 1.28270 1.16466 1.21222 0.90681 0.93088 1.50251 0.92591 1.20015 0.94123 0.92658 0.89153 1.62273 1.11763 1.49259 1.03266 1.20687 0.90666 0.96704 0.92821 1.20352 0.96978 0.95606 0.97831 1.21166 0.94623 0.97101 0.98482 1.21814 0.95169 1.00515 1.04824 1.22297 0.99354 0.90877 0.92719 1.67391 1.10790 1.29191 1.15867 1.21879 0.89242 0.96311 0.89783 1.21734 0.87152 0.95139 0.98084 0.90535 1.22827 0.98479 0.98186 1.02490 1.21951 0.92352 0.97913 0.93898 1.60993 1.58249 1.04265 1.05755 1.22347 0.91045 0.89894 0.97416 1.23682 1.00662 0.90116 0.95681 1.66854 1.44030 1.12522 1.04307 1.23750 1.01763 0.90510 0.94819 1.21960 0.95180 0.99911 0.97922 0.94076 0.95240 0.97063 0.90035 0.93534 0.86180 0.85242 0.84255 0.85681 0.92617 0.90843 0.89216 0.90474 0.83782 0.89341 0.90666 0.85577 0.90892 0.88897 0.92727 0.92860 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -52.84 13.67 21.45 0.29 -52.55 16 2 C 0.07 3.63 4.35 84.66 0.37 4.00 16 3 Si 0.95 47.51 25.48 68.60 1.75 49.26 16 4 H -0.29 -14.45 7.11 99.48 0.71 -13.74 16 5 H -0.35 -18.94 7.11 99.48 0.71 -18.23 16 6 H -0.24 -11.14 4.05 99.48 0.40 -10.74 16 7 C -0.51 -26.25 5.67 25.60 0.15 -26.10 16 8 H 0.06 3.21 5.77 -2.92 -0.02 3.19 16 9 C 0.17 6.91 3.46 85.56 0.30 7.21 16 10 N -0.54 -19.82 2.15 -879.34 -1.89 -21.72 16 11 C 0.12 4.05 4.58 85.56 0.39 4.44 16 12 C -0.11 -4.27 3.55 -19.77 -0.07 -4.34 16 13 C -0.09 -3.55 9.69 22.47 0.22 -3.33 16 14 C -0.20 -8.22 10.11 22.36 0.23 -7.99 16 15 C 0.10 4.47 10.90 84.69 0.92 5.39 16 16 N -0.52 -24.80 10.36 -195.85 -2.03 -26.83 16 17 C 0.19 8.28 6.55 84.67 0.56 8.83 16 18 C 0.09 2.54 2.21 45.04 0.10 2.64 16 19 H 0.08 2.15 7.50 -2.39 -0.02 2.13 16 20 C -0.18 -4.20 4.64 30.63 0.14 -4.05 16 21 C 0.07 1.25 6.46 86.29 0.56 1.81 16 22 N -0.66 -12.71 6.56 -478.33 -3.14 -15.85 16 23 C 0.09 1.95 0.97 5.03 0.00 1.95 16 24 C 0.03 0.61 7.63 86.25 0.66 1.26 16 25 N -0.65 -14.52 8.36 -529.40 -4.43 -18.95 16 26 C 0.02 0.47 8.26 86.26 0.71 1.18 16 27 C -0.11 -3.35 3.07 30.58 0.09 -3.26 16 28 H 0.25 14.63 8.31 -92.71 -0.77 13.86 16 29 H 0.03 1.29 4.84 -2.39 -0.01 1.28 16 30 H 0.01 0.45 6.78 -2.38 -0.02 0.43 16 31 H 0.08 2.43 7.96 -2.39 -0.02 2.41 16 32 H 0.05 1.46 6.85 -2.38 -0.02 1.44 16 33 H 0.12 4.44 8.06 -2.91 -0.02 4.42 16 34 H 0.13 4.50 8.06 -2.91 -0.02 4.48 16 35 H 0.14 5.50 8.06 -2.91 -0.02 5.48 16 36 H 0.13 5.52 7.09 -2.91 -0.02 5.50 16 37 H 0.06 1.47 6.59 -2.39 -0.02 1.45 16 38 H 0.07 1.65 6.79 -2.39 -0.02 1.63 16 39 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 40 H 0.08 1.34 7.80 -2.39 -0.02 1.33 16 41 H 0.34 6.46 8.89 -89.70 -0.80 5.66 16 42 H 0.09 1.54 8.14 -2.38 -0.02 1.52 16 43 H 0.07 1.73 7.55 -2.39 -0.02 1.71 16 44 H 0.33 5.75 8.91 -89.70 -0.80 4.95 16 45 H 0.07 1.75 8.09 -2.39 -0.02 1.73 16 46 H 0.09 1.59 8.14 -2.39 -0.02 1.57 16 47 H 0.05 2.00 6.57 -2.39 -0.02 1.98 16 48 H 0.05 1.82 5.87 -2.39 -0.01 1.80 16 Total: -1.00 -63.36 347.72 -5.04 -68.40 By element: Atomic # 1 Polarization: 29.50 SS G_CDS: -0.92 Total: 28.59 kcal Atomic # 6 Polarization: -15.68 SS G_CDS: 5.32 Total: -10.35 kcal Atomic # 7 Polarization: -124.70 SS G_CDS: -11.19 Total: -135.89 kcal Atomic # 14 Polarization: 47.51 SS G_CDS: 1.75 Total: 49.26 kcal Total: -63.36 -5.04 -68.40 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001246553511.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 150.868 kcal (2) G-P(sol) polarization free energy of solvation -63.360 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.507 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.035 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.396 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.472 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds