Wall clock time and date at job start Tue Mar 31 2020 10:50:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52995 * 109.47333 * 2 1 4 4 H 1.09001 * 109.46975 * 304.16611 * 3 2 1 5 5 C 1.50706 * 109.47172 * 184.16848 * 3 2 1 6 6 H 1.07992 * 119.99377 * 239.99569 * 5 3 2 7 7 C 1.37874 * 119.99898 * 59.99600 * 5 3 2 8 8 N 1.31516 * 120.00021 * 0.02562 * 7 5 3 9 9 Si 1.86793 * 119.99746 * 179.97438 * 7 5 3 10 10 H 1.48497 * 109.47057 * 60.00235 * 9 7 5 11 11 H 1.48506 * 109.47303 * 179.97438 * 9 7 5 12 12 H 1.48500 * 109.47560 * 299.99940 * 9 7 5 13 13 N 1.46897 * 109.47419 * 64.16381 * 3 2 1 14 14 C 1.46904 * 111.00290 * 207.22696 * 13 3 2 15 15 H 1.09001 * 110.88338 * 36.97638 * 14 13 3 16 16 C 1.54902 * 111.00318 * 273.09751 * 14 13 3 17 17 N 1.47431 * 104.83244 * 204.87757 * 16 14 13 18 18 C 1.34773 * 125.65011 * 204.09721 * 17 16 14 19 19 O 1.21508 * 119.99846 * 359.97438 * 18 17 16 20 20 O 1.34637 * 119.99961 * 179.97438 * 18 17 16 21 21 C 1.45195 * 117.00277 * 179.97438 * 20 18 17 22 22 C 1.52994 * 109.47276 * 59.99637 * 21 20 18 23 23 C 1.53004 * 109.46980 * 299.99858 * 21 20 18 24 24 C 1.52995 * 109.47677 * 179.97438 * 21 20 18 25 25 C 1.47025 * 108.69766 * 24.35514 * 17 16 14 26 26 C 1.54332 * 107.27061 * 358.58592 * 25 17 16 27 27 H 1.09003 * 110.66478 * 96.52304 * 26 25 17 28 28 F 1.39895 * 110.85528 * 219.67354 * 26 25 17 29 29 H 1.08999 * 109.46614 * 54.89869 * 1 2 3 30 30 H 1.09000 * 109.47329 * 174.89837 * 1 2 3 31 31 H 1.09002 * 109.46902 * 294.89631 * 1 2 3 32 32 H 1.08997 * 109.46982 * 239.99625 * 2 1 3 33 33 H 1.09008 * 109.46717 * 119.99734 * 2 1 3 34 34 H 0.97004 * 119.99511 * 180.02562 * 8 7 5 35 35 H 1.00906 * 111.00018 * 83.27739 * 13 3 2 36 36 H 1.08998 * 110.37323 * 86.04375 * 16 14 13 37 37 H 1.08998 * 110.37233 * 323.71186 * 16 14 13 38 38 H 1.09001 * 109.47490 * 300.00263 * 22 21 20 39 39 H 1.09000 * 109.47438 * 180.02562 * 22 21 20 40 40 H 1.08999 * 109.47304 * 60.00082 * 22 21 20 41 41 H 1.09000 * 109.47454 * 180.02562 * 23 21 20 42 42 H 1.08999 * 109.47307 * 299.99929 * 23 21 20 43 43 H 1.09002 * 109.47185 * 59.99479 * 23 21 20 44 44 H 1.08998 * 109.47168 * 300.00536 * 24 21 20 45 45 H 1.09008 * 109.47191 * 59.99459 * 24 21 20 46 46 H 1.09000 * 109.47487 * 179.97438 * 24 21 20 47 47 H 1.08999 * 109.87928 * 118.13571 * 25 17 16 48 48 H 1.09006 * 109.88192 * 239.29489 * 25 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6171 1.9774 -0.8503 5 6 3.5436 1.4436 -0.1033 6 1 4.1381 1.8920 0.6789 7 6 4.1599 0.8723 -1.1963 8 7 3.4358 0.3268 -2.1490 9 14 6.0235 0.8745 -1.3246 10 1 6.6002 0.1462 -0.1661 11 1 6.4337 0.2037 -2.5844 12 1 6.5181 2.2747 -1.3251 13 7 1.6343 2.1054 1.2465 14 6 1.5068 3.5561 1.0539 15 1 1.0980 3.7829 0.0693 16 6 2.8668 4.2662 1.2675 17 7 2.5160 5.6456 1.6520 18 6 3.3044 6.7280 1.4999 19 8 4.4097 6.6104 1.0090 20 8 2.8674 7.9397 1.8920 21 6 3.7700 9.0604 1.6985 22 6 4.0950 9.2024 0.2103 23 6 5.0616 8.8161 2.4815 24 6 3.1045 10.3437 2.1994 25 6 1.1660 5.6438 2.2343 26 6 0.6433 4.1929 2.1747 27 1 0.8090 3.6850 3.1249 28 9 -0.7125 4.1657 1.8309 29 1 -0.3632 0.5909 -0.8408 30 1 -0.3634 -1.0236 -0.0914 31 1 -0.3633 0.4326 0.9322 32 1 1.8933 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8901 34 1 3.8695 -0.0755 -2.9178 35 1 2.2785 1.8952 1.9942 36 1 3.4445 4.2654 0.3433 37 1 3.4270 3.7807 2.0665 38 1 4.5691 8.2882 -0.1470 39 1 4.7730 10.0435 0.0650 40 1 3.1749 9.3764 -0.3476 41 1 5.7391 9.6576 2.3367 42 1 4.8301 8.7149 3.5419 43 1 5.5356 7.9018 2.1244 44 1 2.1845 10.5176 1.6413 45 1 2.8725 10.2428 3.2597 46 1 3.7822 11.1850 2.0545 47 1 1.2084 5.9825 3.2695 48 1 0.5116 6.2957 1.6554 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255152006.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:50:40 Heat of formation + Delta-G solvation = -133.038315 kcal Electronic energy + Delta-G solvation = -28334.433446 eV Core-core repulsion = 24338.694189 eV Total energy + Delta-G solvation = -3995.739257 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.195 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -47.37094 -40.72421 -38.58773 -36.64703 -35.57827 -34.07790 -32.54036 -31.29726 -29.50754 -27.82654 -27.53971 -27.47173 -26.11011 -23.70064 -22.61605 -21.55463 -20.76240 -19.67582 -19.34022 -17.85691 -16.93958 -16.65647 -16.49936 -15.90782 -15.50242 -14.86049 -14.65107 -14.52053 -14.44025 -14.05310 -13.90045 -13.60941 -13.29155 -13.02920 -12.73474 -12.64997 -12.55169 -12.28107 -12.09838 -12.00339 -11.92580 -11.68191 -11.45764 -11.41171 -11.29342 -11.19993 -11.02669 -10.86279 -10.73528 -10.52513 -10.40265 -10.24629 -9.96161 -9.63780 -9.53933 -9.14332 -8.66527 -8.43147 -7.55107 -6.06493 -4.19790 2.10621 2.93027 3.28090 3.32757 3.36955 3.81862 4.28267 4.36542 4.57489 4.60062 4.63603 4.77965 4.84246 5.02745 5.19773 5.30814 5.36125 5.37222 5.39876 5.50347 5.52384 5.54246 5.60975 5.63839 5.74819 5.82936 6.00858 6.14566 6.20533 6.22337 6.30915 6.32534 6.38973 6.47975 6.51028 6.67573 7.02896 7.13646 7.31143 7.48521 7.53254 7.70635 7.90839 8.00026 8.17137 8.41554 8.46301 8.89293 9.49036 10.94419 Molecular weight = 316.19amu Principal moments of inertia in cm(-1) A = 0.012659 B = 0.004259 C = 0.003344 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2211.336038 B = 6572.028071 C = 8372.161487 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.106 4.106 3 C 0.215 3.785 4 H 0.035 0.965 5 C -0.551 4.551 6 H 0.056 0.944 7 C 0.072 3.928 8 N -0.882 5.882 9 Si 0.886 3.114 10 H -0.277 1.277 11 H -0.287 1.287 12 H -0.276 1.276 13 N -0.668 5.668 14 C 0.071 3.929 15 H 0.100 0.900 16 C 0.103 3.897 17 N -0.600 5.600 18 C 0.666 3.334 19 O -0.561 6.561 20 O -0.364 6.364 21 C 0.135 3.865 22 C -0.185 4.185 23 C -0.184 4.184 24 C -0.139 4.139 25 C 0.084 3.916 26 C 0.086 3.914 27 H 0.102 0.898 28 F -0.198 7.198 29 H 0.037 0.963 30 H 0.025 0.975 31 H 0.047 0.953 32 H 0.092 0.908 33 H 0.032 0.968 34 H 0.263 0.737 35 H 0.334 0.666 36 H 0.099 0.901 37 H 0.073 0.927 38 H 0.089 0.911 39 H 0.068 0.932 40 H 0.059 0.941 41 H 0.068 0.932 42 H 0.058 0.942 43 H 0.089 0.911 44 H 0.066 0.934 45 H 0.065 0.935 46 H 0.079 0.921 47 H 0.078 0.922 48 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.970 15.147 9.285 18.013 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.144 4.144 3 C 0.108 3.892 4 H 0.053 0.947 5 C -0.590 4.590 6 H 0.074 0.926 7 C -0.131 4.131 8 N -0.520 5.520 9 Si 0.714 3.286 10 H -0.202 1.202 11 H -0.212 1.212 12 H -0.201 1.201 13 N -0.297 5.297 14 C -0.042 4.042 15 H 0.118 0.882 16 C -0.019 4.019 17 N -0.342 5.342 18 C 0.421 3.579 19 O -0.450 6.450 20 O -0.279 6.279 21 C 0.099 3.901 22 C -0.242 4.242 23 C -0.241 4.241 24 C -0.196 4.196 25 C -0.041 4.041 26 C 0.048 3.952 27 H 0.120 0.880 28 F -0.179 7.179 29 H 0.056 0.944 30 H 0.044 0.956 31 H 0.066 0.934 32 H 0.110 0.890 33 H 0.051 0.949 34 H 0.073 0.927 35 H 0.152 0.848 36 H 0.117 0.883 37 H 0.091 0.909 38 H 0.108 0.892 39 H 0.087 0.913 40 H 0.078 0.922 41 H 0.087 0.913 42 H 0.077 0.923 43 H 0.107 0.893 44 H 0.085 0.915 45 H 0.084 0.916 46 H 0.097 0.903 47 H 0.097 0.903 48 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -3.253 15.006 8.818 17.707 hybrid contribution 2.030 0.312 -0.224 2.066 sum -1.223 15.318 8.595 17.607 Atomic orbital electron populations 1.21702 0.98851 0.98412 1.00502 1.21503 0.92161 0.98883 1.01895 1.19271 0.93088 0.91368 0.85453 0.94703 1.21783 0.92209 1.38794 1.06213 0.92586 1.24886 0.97968 0.94717 0.95557 1.69862 1.35105 1.37523 1.09484 0.86743 0.85997 0.78438 0.77418 1.20236 1.21232 1.20136 1.60991 1.54203 1.03472 1.11015 1.23239 0.92186 0.90501 0.98308 0.88153 1.23320 0.99237 0.77060 1.02321 1.47088 1.16439 1.06529 1.64177 1.17499 0.82631 0.80093 0.77647 1.90927 1.19823 1.85287 1.48987 1.86296 1.47799 1.15327 1.78471 1.22035 0.88739 0.83070 0.96300 1.22525 1.02512 1.04630 0.94505 1.22519 0.96840 1.04654 1.00059 1.21844 1.01456 0.94205 1.02115 1.22536 0.84219 0.97669 0.99647 1.22623 0.77093 0.94681 1.00760 0.87980 1.92815 1.33859 1.97244 1.93951 0.94395 0.95596 0.93407 0.89004 0.94931 0.92709 0.84790 0.88272 0.90877 0.89209 0.91272 0.92163 0.91265 0.92278 0.89259 0.91497 0.91573 0.90260 0.90330 0.90126 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.73 9.73 37.16 0.36 -2.37 16 2 C -0.11 -2.40 5.45 -26.73 -0.15 -2.55 16 3 C 0.22 4.92 1.99 -68.87 -0.14 4.79 16 4 H 0.04 0.90 7.45 -51.93 -0.39 0.51 16 5 C -0.55 -13.80 7.79 -34.44 -0.27 -14.07 16 6 H 0.06 1.38 7.23 -52.49 -0.38 1.00 16 7 C 0.07 1.90 5.29 -17.82 -0.09 1.80 16 8 N -0.88 -24.11 11.30 55.43 0.63 -23.48 16 9 Si 0.89 20.83 29.54 -169.99 -5.02 15.81 16 10 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 11 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 12 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 13 N -0.67 -12.49 5.67 -98.71 -0.56 -13.05 16 14 C 0.07 1.19 3.12 -65.56 -0.20 0.99 16 15 H 0.10 1.87 7.53 -51.93 -0.39 1.48 16 16 C 0.10 1.76 5.38 -2.53 -0.01 1.74 16 17 N -0.60 -9.32 3.33 -176.29 -0.59 -9.90 16 18 C 0.67 10.99 7.93 54.05 0.43 11.42 16 19 O -0.56 -10.65 12.14 -19.28 -0.23 -10.88 16 20 O -0.36 -5.14 9.49 -40.32 -0.38 -5.52 16 21 C 0.14 1.57 1.13 -90.62 -0.10 1.47 16 22 C -0.18 -2.18 8.37 37.15 0.31 -1.87 16 23 C -0.18 -2.08 8.37 37.16 0.31 -1.77 16 24 C -0.14 -1.16 8.85 37.16 0.33 -0.83 16 25 C 0.08 1.07 6.72 -3.06 -0.02 1.05 16 26 C 0.09 1.18 4.45 -24.89 -0.11 1.07 16 27 H 0.10 1.24 8.14 -51.93 -0.42 0.82 16 28 F -0.20 -3.05 17.19 2.25 0.04 -3.01 16 29 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 30 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.05 0.91 7.87 -51.93 -0.41 0.50 16 32 H 0.09 2.35 5.97 -51.93 -0.31 2.04 16 33 H 0.03 0.72 8.14 -51.92 -0.42 0.30 16 34 H 0.26 6.95 8.31 -40.82 -0.34 6.61 16 35 H 0.33 6.01 7.93 -39.29 -0.31 5.70 16 36 H 0.10 2.01 7.92 -51.93 -0.41 1.59 16 37 H 0.07 1.21 7.80 -51.93 -0.40 0.81 16 38 H 0.09 1.34 5.88 -51.93 -0.31 1.03 16 39 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 40 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 41 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 42 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 43 H 0.09 1.28 5.88 -51.93 -0.31 0.97 16 44 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 45 H 0.07 0.52 8.14 -51.92 -0.42 0.10 16 46 H 0.08 0.51 8.14 -51.93 -0.42 0.08 16 47 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 48 H 0.08 1.00 8.10 -51.93 -0.42 0.58 16 LS Contribution 380.12 15.07 5.73 5.73 Total: -1.00 -28.07 380.12 -7.99 -36.06 By element: Atomic # 1 Polarization: 15.61 SS G_CDS: -8.24 Total: 7.37 kcal Atomic # 6 Polarization: 0.23 SS G_CDS: 0.64 Total: 0.88 kcal Atomic # 7 Polarization: -45.91 SS G_CDS: -0.52 Total: -46.43 kcal Atomic # 8 Polarization: -15.78 SS G_CDS: -0.62 Total: -16.40 kcal Atomic # 9 Polarization: -3.05 SS G_CDS: 0.04 Total: -3.01 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -5.02 Total: 15.81 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -28.07 -7.99 -36.06 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255152006.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -96.978 kcal (2) G-P(sol) polarization free energy of solvation -28.070 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.048 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.990 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.060 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.038 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds