Wall clock time and date at job start Tue Mar 31 2020 10:50:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47443 * 2 1 4 4 H 1.09005 * 109.46932 * 54.39890 * 3 2 1 5 5 C 1.50695 * 109.47457 * 174.40291 * 3 2 1 6 6 H 1.08000 * 119.99820 * 116.42757 * 5 3 2 7 7 C 1.37876 * 119.99944 * 296.43736 * 5 3 2 8 8 N 1.31515 * 119.99813 * 352.78440 * 7 5 3 9 9 Si 1.86805 * 120.00096 * 172.78611 * 7 5 3 10 10 H 1.48493 * 109.47122 * 179.97438 * 9 7 5 11 11 H 1.48501 * 109.46895 * 299.99851 * 9 7 5 12 12 H 1.48496 * 109.46785 * 59.99487 * 9 7 5 13 13 N 1.46907 * 109.46883 * 294.40500 * 3 2 1 14 14 C 1.46899 * 110.99867 * 154.53108 * 13 3 2 15 15 H 1.08998 * 110.88637 * 33.29606 * 14 13 3 16 16 C 1.54916 * 111.00322 * 269.37366 * 14 13 3 17 17 N 1.47427 * 104.83150 * 204.91839 * 16 14 13 18 18 C 1.34771 * 125.64838 * 204.17572 * 17 16 14 19 19 O 1.21511 * 120.00080 * 359.97021 * 18 17 16 20 20 O 1.34641 * 120.00084 * 179.97438 * 18 17 16 21 21 C 1.45200 * 117.00146 * 179.97438 * 20 18 17 22 22 C 1.53003 * 109.46912 * 59.99813 * 21 20 18 23 23 C 1.52997 * 109.47377 * 179.97438 * 21 20 18 24 24 C 1.53000 * 109.47049 * 300.00197 * 21 20 18 25 25 C 1.47021 * 108.70162 * 24.12476 * 17 16 14 26 26 C 1.54325 * 107.27463 * 358.94251 * 25 17 16 27 27 H 1.09006 * 110.71770 * 96.17003 * 26 25 17 28 28 F 1.39896 * 110.87298 * 219.36989 * 26 25 17 29 29 H 1.08995 * 109.47636 * 186.10426 * 1 2 3 30 30 H 1.09000 * 109.47435 * 306.10659 * 1 2 3 31 31 H 1.09006 * 109.47501 * 66.10235 * 1 2 3 32 32 H 1.09005 * 109.46880 * 239.99827 * 2 1 3 33 33 H 1.08996 * 109.47119 * 119.99902 * 2 1 3 34 34 H 0.96998 * 120.00447 * 355.64706 * 8 7 5 35 35 H 1.00904 * 111.00091 * 30.57776 * 13 3 2 36 36 H 1.09002 * 110.36229 * 323.75285 * 16 14 13 37 37 H 1.09001 * 110.36742 * 86.07710 * 16 14 13 38 38 H 1.08999 * 109.47011 * 60.00229 * 22 21 20 39 39 H 1.09003 * 109.46947 * 180.02562 * 22 21 20 40 40 H 1.09005 * 109.47193 * 299.99945 * 22 21 20 41 41 H 1.08998 * 109.47246 * 59.99596 * 23 21 20 42 42 H 1.08994 * 109.47179 * 179.97438 * 23 21 20 43 43 H 1.09010 * 109.46764 * 299.99808 * 23 21 20 44 44 H 1.08998 * 109.47706 * 59.99460 * 24 21 20 45 45 H 1.08994 * 109.47232 * 179.97438 * 24 21 20 46 46 H 1.09007 * 109.46530 * 299.99599 * 24 21 20 47 47 H 1.09000 * 109.88424 * 239.52247 * 25 17 16 48 48 H 1.09001 * 109.87845 * 118.36148 * 25 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.5971 1.9844 0.8356 5 6 3.5406 1.4447 0.1386 6 1 4.1559 1.8343 -0.6589 7 6 4.1280 0.9492 1.2833 8 7 3.3811 0.6065 2.3102 9 14 5.9846 0.7645 1.3758 10 1 6.3618 0.2151 2.7028 11 1 6.4438 -0.1597 0.3080 12 1 6.6238 2.0920 1.1902 13 7 1.6637 2.0949 -1.2613 14 6 1.5725 3.5514 -1.0938 15 1 2.3017 3.9052 -0.3650 16 6 0.1369 3.9756 -0.6950 17 7 0.0170 5.3735 -1.1478 18 6 -0.8309 6.2922 -0.6444 19 8 -1.5830 5.9928 0.2619 20 8 -0.8447 7.5418 -1.1456 21 6 -1.7840 8.4785 -0.5553 22 6 -1.4777 8.6368 0.9354 23 6 -1.6547 9.8360 -1.2490 24 6 -3.2092 7.9498 -0.7297 25 6 0.9764 5.5997 -2.2386 26 6 1.7463 4.2795 -2.4528 27 1 1.3001 3.6996 -3.2609 28 9 3.0985 4.5274 -2.7122 29 1 -0.3634 -1.0218 0.1093 30 1 -0.3634 0.6056 0.8303 31 1 -0.3634 0.4163 -0.9396 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 2.4238 0.7610 2.2866 35 1 0.7995 1.7173 -1.6200 36 1 -0.5979 3.3489 -1.2003 37 1 0.0098 3.9147 0.3858 38 1 -0.4624 9.0134 1.0596 39 1 -2.1831 9.3397 1.3786 40 1 -1.5696 7.6698 1.4299 41 1 -1.8725 9.7236 -2.3111 42 1 -2.3601 10.5390 -0.8062 43 1 -0.6392 10.2124 -1.1243 44 1 -3.3011 6.9828 -0.2352 45 1 -3.9143 8.6527 -0.2862 46 1 -3.4274 7.8370 -1.7917 47 1 1.6709 6.3933 -1.9629 48 1 0.4439 5.8704 -3.1504 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255152007.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:50:43 Heat of formation + Delta-G solvation = -132.553069 kcal Electronic energy + Delta-G solvation = -28239.399535 eV Core-core repulsion = 24243.681320 eV Total energy + Delta-G solvation = -3995.718215 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.195 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -47.32544 -40.86402 -38.75187 -36.87396 -35.92139 -34.20420 -32.71517 -31.42217 -29.54860 -28.07527 -27.61964 -27.55751 -25.76417 -23.84136 -22.87783 -21.68727 -20.82780 -20.00785 -19.48917 -18.00477 -17.15136 -16.73512 -16.51918 -16.01311 -15.61906 -15.20771 -14.72748 -14.50919 -14.46642 -14.15303 -13.92924 -13.71714 -13.45214 -13.27114 -12.80827 -12.72637 -12.52825 -12.44819 -12.34323 -12.23666 -12.09078 -12.02871 -11.69029 -11.51510 -11.49402 -11.27364 -10.99750 -10.73697 -10.71227 -10.53282 -10.51191 -10.11069 -10.06126 -10.01426 -9.89321 -8.90323 -8.72654 -8.37038 -7.54330 -6.31905 -4.04099 1.95135 2.77271 3.47708 3.48587 3.67478 3.68804 4.18963 4.47242 4.51374 4.55336 4.56047 4.67489 4.70325 4.97786 5.16980 5.22901 5.24167 5.31842 5.32956 5.38423 5.42237 5.46573 5.50270 5.56289 5.66201 5.75705 5.77625 5.84867 5.90075 5.92559 5.99803 6.09760 6.10370 6.17817 6.30832 6.36687 6.54590 6.69865 6.78605 7.04256 7.29393 7.36444 7.81763 7.96323 8.25525 8.33404 8.63195 8.89047 9.64988 11.02737 Molecular weight = 316.19amu Principal moments of inertia in cm(-1) A = 0.016624 B = 0.003362 C = 0.003267 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1683.859176 B = 8326.433191 C = 8567.761372 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.130 4.130 3 C 0.208 3.792 4 H -0.002 1.002 5 C -0.580 4.580 6 H 0.058 0.942 7 C 0.019 3.981 8 N -0.914 5.914 9 Si 1.066 2.934 10 H -0.285 1.285 11 H -0.288 1.288 12 H -0.289 1.289 13 N -0.658 5.658 14 C 0.066 3.934 15 H 0.113 0.887 16 C 0.097 3.903 17 N -0.598 5.598 18 C 0.669 3.331 19 O -0.565 6.565 20 O -0.361 6.361 21 C 0.135 3.865 22 C -0.185 4.185 23 C -0.140 4.140 24 C -0.183 4.183 25 C 0.082 3.918 26 C 0.091 3.909 27 H 0.101 0.899 28 F -0.193 7.193 29 H 0.043 0.957 30 H 0.045 0.955 31 H 0.040 0.960 32 H 0.054 0.946 33 H 0.077 0.923 34 H 0.269 0.731 35 H 0.322 0.678 36 H 0.072 0.928 37 H 0.087 0.913 38 H 0.060 0.940 39 H 0.069 0.931 40 H 0.088 0.912 41 H 0.066 0.934 42 H 0.079 0.921 43 H 0.067 0.933 44 H 0.088 0.912 45 H 0.069 0.931 46 H 0.059 0.941 47 H 0.083 0.917 48 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.168 14.206 -8.760 20.082 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.169 4.169 3 C 0.101 3.899 4 H 0.015 0.985 5 C -0.619 4.619 6 H 0.077 0.923 7 C -0.185 4.185 8 N -0.550 5.550 9 Si 0.894 3.106 10 H -0.210 1.210 11 H -0.214 1.214 12 H -0.215 1.215 13 N -0.288 5.288 14 C -0.047 4.047 15 H 0.131 0.869 16 C -0.026 4.026 17 N -0.339 5.339 18 C 0.424 3.576 19 O -0.454 6.454 20 O -0.276 6.276 21 C 0.098 3.902 22 C -0.242 4.242 23 C -0.197 4.197 24 C -0.240 4.240 25 C -0.042 4.042 26 C 0.054 3.946 27 H 0.119 0.881 28 F -0.173 7.173 29 H 0.062 0.938 30 H 0.064 0.936 31 H 0.059 0.941 32 H 0.073 0.927 33 H 0.095 0.905 34 H 0.080 0.920 35 H 0.141 0.859 36 H 0.090 0.910 37 H 0.106 0.894 38 H 0.079 0.921 39 H 0.088 0.912 40 H 0.107 0.893 41 H 0.085 0.915 42 H 0.098 0.902 43 H 0.086 0.914 44 H 0.106 0.894 45 H 0.088 0.912 46 H 0.078 0.922 47 H 0.102 0.898 48 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -9.565 13.701 -7.704 18.400 hybrid contribution -2.104 0.702 -0.501 2.274 sum -11.669 14.403 -8.205 20.272 Atomic orbital electron populations 1.21912 0.98784 1.00446 1.00032 1.21850 0.92018 1.00316 1.02695 1.19370 0.96759 0.89504 0.84300 0.98494 1.21963 0.90575 1.44730 1.04589 0.92336 1.25754 1.06742 0.93838 0.92162 1.70816 1.07832 1.45169 1.31225 0.83592 0.74583 0.76536 0.75887 1.21008 1.21415 1.21529 1.60709 1.35790 0.99695 1.32588 1.23330 0.94371 0.91390 0.95605 0.86934 1.23244 0.98711 0.78715 1.01959 1.46912 1.38305 1.10890 1.37826 1.17472 0.79846 0.80015 0.80270 1.90909 1.42717 1.80395 1.31382 1.86311 1.60212 1.19834 1.61268 1.22075 0.87572 0.87060 0.93482 1.22527 1.02121 1.04787 0.94736 1.21849 1.03254 0.93384 1.01180 1.22514 0.94724 1.04151 1.02630 1.22598 0.92341 0.98618 0.90605 1.22519 0.77796 0.94472 0.99855 0.88071 1.92844 1.33997 1.95142 1.95341 0.93769 0.93630 0.94066 0.92690 0.90492 0.92007 0.85904 0.91001 0.89443 0.92072 0.91169 0.89314 0.91523 0.90174 0.91414 0.89367 0.91170 0.92238 0.89826 0.90113 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.68 9.64 37.16 0.36 -2.32 16 2 C -0.13 -2.82 5.19 -26.73 -0.14 -2.96 16 3 C 0.21 4.81 1.54 -68.86 -0.11 4.70 16 4 H 0.00 -0.06 7.26 -51.93 -0.38 -0.44 16 5 C -0.58 -15.66 8.52 -34.44 -0.29 -15.95 16 6 H 0.06 1.65 7.82 -52.49 -0.41 1.24 16 7 C 0.02 0.52 5.19 -17.82 -0.09 0.43 16 8 N -0.91 -26.52 12.78 55.43 0.71 -25.81 16 9 Si 1.07 25.05 29.91 -169.99 -5.08 19.97 16 10 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 11 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 12 H -0.29 -6.59 7.11 56.52 0.40 -6.18 16 13 N -0.66 -12.62 6.19 -98.71 -0.61 -13.23 16 14 C 0.07 1.14 2.90 -65.56 -0.19 0.95 16 15 H 0.11 2.32 7.75 -51.93 -0.40 1.91 16 16 C 0.10 1.51 6.52 -2.52 -0.02 1.49 16 17 N -0.60 -8.78 3.33 -176.29 -0.59 -9.36 16 18 C 0.67 10.33 7.93 54.05 0.43 10.76 16 19 O -0.56 -9.81 12.14 -19.28 -0.23 -10.04 16 20 O -0.36 -4.85 9.49 -40.33 -0.38 -5.23 16 21 C 0.13 1.46 1.13 -90.62 -0.10 1.36 16 22 C -0.18 -2.03 8.37 37.16 0.31 -1.72 16 23 C -0.14 -1.09 8.85 37.16 0.33 -0.76 16 24 C -0.18 -1.89 8.37 37.16 0.31 -1.58 16 25 C 0.08 1.05 6.72 -3.06 -0.02 1.03 16 26 C 0.09 1.32 4.45 -24.90 -0.11 1.21 16 27 H 0.10 1.28 8.14 -51.93 -0.42 0.85 16 28 F -0.19 -3.30 17.19 2.25 0.04 -3.26 16 29 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 31 H 0.04 0.63 6.67 -51.93 -0.35 0.28 16 32 H 0.05 1.19 8.14 -51.93 -0.42 0.77 16 33 H 0.08 1.89 6.16 -51.93 -0.32 1.57 16 34 H 0.27 7.72 6.17 -40.82 -0.25 7.47 16 35 H 0.32 5.40 6.09 -39.29 -0.24 5.16 16 36 H 0.07 1.01 7.76 -51.93 -0.40 0.61 16 37 H 0.09 1.52 8.04 -51.93 -0.42 1.10 16 38 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 39 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 40 H 0.09 1.23 5.88 -51.93 -0.31 0.92 16 41 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 42 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 43 H 0.07 0.52 8.14 -51.92 -0.42 0.10 16 44 H 0.09 1.15 5.88 -51.93 -0.31 0.84 16 45 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 46 H 0.06 0.57 8.14 -51.92 -0.42 0.15 16 47 H 0.08 1.06 8.11 -51.93 -0.42 0.64 16 48 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 LS Contribution 378.94 15.07 5.71 5.71 Total: -1.00 -30.48 378.94 -7.84 -38.32 By element: Atomic # 1 Polarization: 14.37 SS G_CDS: -8.07 Total: 6.30 kcal Atomic # 6 Polarization: -4.04 SS G_CDS: 0.67 Total: -3.37 kcal Atomic # 7 Polarization: -47.91 SS G_CDS: -0.49 Total: -48.40 kcal Atomic # 8 Polarization: -14.66 SS G_CDS: -0.62 Total: -15.27 kcal Atomic # 9 Polarization: -3.30 SS G_CDS: 0.04 Total: -3.26 kcal Atomic # 14 Polarization: 25.05 SS G_CDS: -5.08 Total: 19.97 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -30.48 -7.84 -38.32 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255152007.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.232 kcal (2) G-P(sol) polarization free energy of solvation -30.478 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.710 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.843 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.321 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.553 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds