Wall clock time and date at job start Tue Mar 31 2020 10:50:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47443 * 2 1 4 4 H 1.09005 * 109.46932 * 54.39890 * 3 2 1 5 5 C 1.50695 * 109.47457 * 174.40291 * 3 2 1 6 6 H 1.08000 * 119.99820 * 116.42757 * 5 3 2 7 7 C 1.37876 * 119.99944 * 296.43736 * 5 3 2 8 8 N 1.31515 * 119.99813 * 352.78440 * 7 5 3 9 9 Si 1.86805 * 120.00096 * 172.78611 * 7 5 3 10 10 H 1.48493 * 109.47122 * 179.97438 * 9 7 5 11 11 H 1.48501 * 109.46895 * 299.99851 * 9 7 5 12 12 H 1.48496 * 109.46785 * 59.99487 * 9 7 5 13 13 N 1.46907 * 109.46883 * 294.40500 * 3 2 1 14 14 C 1.46899 * 110.99867 * 154.53108 * 13 3 2 15 15 H 1.08998 * 110.88637 * 33.29606 * 14 13 3 16 16 C 1.54916 * 111.00322 * 269.37366 * 14 13 3 17 17 N 1.47427 * 104.83150 * 204.91839 * 16 14 13 18 18 C 1.34771 * 125.64838 * 204.17572 * 17 16 14 19 19 O 1.21511 * 120.00080 * 359.97021 * 18 17 16 20 20 O 1.34641 * 120.00084 * 179.97438 * 18 17 16 21 21 C 1.45200 * 117.00146 * 179.97438 * 20 18 17 22 22 C 1.53003 * 109.46912 * 59.99813 * 21 20 18 23 23 C 1.52997 * 109.47377 * 179.97438 * 21 20 18 24 24 C 1.53000 * 109.47049 * 300.00197 * 21 20 18 25 25 C 1.47021 * 108.70162 * 24.12476 * 17 16 14 26 26 C 1.54325 * 107.27463 * 358.94251 * 25 17 16 27 27 H 1.09006 * 110.71770 * 96.17003 * 26 25 17 28 28 F 1.39896 * 110.87298 * 219.36989 * 26 25 17 29 29 H 1.08995 * 109.47636 * 186.10426 * 1 2 3 30 30 H 1.09000 * 109.47435 * 306.10659 * 1 2 3 31 31 H 1.09006 * 109.47501 * 66.10235 * 1 2 3 32 32 H 1.09005 * 109.46880 * 239.99827 * 2 1 3 33 33 H 1.08996 * 109.47119 * 119.99902 * 2 1 3 34 34 H 0.96998 * 120.00447 * 355.64706 * 8 7 5 35 35 H 1.00904 * 111.00091 * 30.57776 * 13 3 2 36 36 H 1.09002 * 110.36229 * 323.75285 * 16 14 13 37 37 H 1.09001 * 110.36742 * 86.07710 * 16 14 13 38 38 H 1.08999 * 109.47011 * 60.00229 * 22 21 20 39 39 H 1.09003 * 109.46947 * 180.02562 * 22 21 20 40 40 H 1.09005 * 109.47193 * 299.99945 * 22 21 20 41 41 H 1.08998 * 109.47246 * 59.99596 * 23 21 20 42 42 H 1.08994 * 109.47179 * 179.97438 * 23 21 20 43 43 H 1.09010 * 109.46764 * 299.99808 * 23 21 20 44 44 H 1.08998 * 109.47706 * 59.99460 * 24 21 20 45 45 H 1.08994 * 109.47232 * 179.97438 * 24 21 20 46 46 H 1.09007 * 109.46530 * 299.99599 * 24 21 20 47 47 H 1.09000 * 109.88424 * 239.52247 * 25 17 16 48 48 H 1.09001 * 109.87845 * 118.36148 * 25 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.5971 1.9844 0.8356 5 6 3.5406 1.4447 0.1386 6 1 4.1559 1.8343 -0.6589 7 6 4.1280 0.9492 1.2833 8 7 3.3811 0.6065 2.3102 9 14 5.9846 0.7645 1.3758 10 1 6.3618 0.2151 2.7028 11 1 6.4438 -0.1597 0.3080 12 1 6.6238 2.0920 1.1902 13 7 1.6637 2.0949 -1.2613 14 6 1.5725 3.5514 -1.0938 15 1 2.3017 3.9052 -0.3650 16 6 0.1369 3.9756 -0.6950 17 7 0.0170 5.3735 -1.1478 18 6 -0.8309 6.2922 -0.6444 19 8 -1.5830 5.9928 0.2619 20 8 -0.8447 7.5418 -1.1456 21 6 -1.7840 8.4785 -0.5553 22 6 -1.4777 8.6368 0.9354 23 6 -1.6547 9.8360 -1.2490 24 6 -3.2092 7.9498 -0.7297 25 6 0.9764 5.5997 -2.2386 26 6 1.7463 4.2795 -2.4528 27 1 1.3001 3.6996 -3.2609 28 9 3.0985 4.5274 -2.7122 29 1 -0.3634 -1.0218 0.1093 30 1 -0.3634 0.6056 0.8303 31 1 -0.3634 0.4163 -0.9396 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 2.4238 0.7610 2.2866 35 1 0.7995 1.7173 -1.6200 36 1 -0.5979 3.3489 -1.2003 37 1 0.0098 3.9147 0.3858 38 1 -0.4624 9.0134 1.0596 39 1 -2.1831 9.3397 1.3786 40 1 -1.5696 7.6698 1.4299 41 1 -1.8725 9.7236 -2.3111 42 1 -2.3601 10.5390 -0.8062 43 1 -0.6392 10.2124 -1.1243 44 1 -3.3011 6.9828 -0.2352 45 1 -3.9143 8.6527 -0.2862 46 1 -3.4274 7.8370 -1.7917 47 1 1.6709 6.3933 -1.9629 48 1 0.4439 5.8704 -3.1504 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255152007.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:50:42 Heat of formation + Delta-G solvation = -151.788425 kcal Electronic energy + Delta-G solvation = -28240.233642 eV Core-core repulsion = 24243.681320 eV Total energy + Delta-G solvation = -3996.552323 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.195 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -48.62658 -41.97402 -40.00206 -38.25239 -37.34765 -35.22119 -34.43201 -33.08637 -30.81213 -29.47222 -28.39929 -28.30741 -27.57898 -25.30028 -24.51560 -22.74108 -22.18536 -21.76832 -20.54505 -19.16682 -18.88538 -18.13557 -17.68320 -17.22442 -16.89765 -16.57545 -16.02728 -15.82788 -15.65593 -15.59389 -15.33276 -15.03367 -14.60926 -14.54870 -14.20839 -14.06596 -13.99443 -13.62228 -13.36020 -13.31665 -13.13777 -12.97434 -12.90252 -12.89701 -12.60290 -12.50750 -12.47971 -12.39343 -12.28881 -11.99797 -11.94193 -11.71887 -11.47721 -11.44626 -11.20561 -10.70914 -10.46339 -10.03216 -9.25139 -8.51671 -6.24861 0.85246 1.54193 1.59184 1.60524 1.80210 2.58045 2.64519 2.95997 3.19383 3.21069 3.37601 3.71936 3.76549 3.80410 3.85483 3.91741 3.98100 4.23441 4.31617 4.35204 4.36724 4.47372 4.47904 4.54024 4.58789 4.63494 4.67398 4.73720 4.81068 4.84336 4.85061 4.85934 4.99509 5.06163 5.11837 5.15477 5.25100 5.30349 5.33271 5.37706 5.52659 5.94473 6.13216 6.19959 6.41313 6.58321 6.85677 7.09726 7.50956 8.82207 Molecular weight = 316.19amu Principal moments of inertia in cm(-1) A = 0.016624 B = 0.003362 C = 0.003267 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1683.859176 B = 8326.433191 C = 8567.761372 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.123 4.123 3 C 0.214 3.786 4 H -0.031 1.031 5 C -0.589 4.589 6 H 0.042 0.958 7 C -0.028 4.028 8 N -0.936 5.936 9 Si 1.106 2.894 10 H -0.286 1.286 11 H -0.272 1.272 12 H -0.278 1.278 13 N -0.656 5.656 14 C 0.064 3.936 15 H 0.070 0.930 16 C 0.110 3.890 17 N -0.601 5.601 18 C 0.666 3.334 19 O -0.590 6.590 20 O -0.360 6.360 21 C 0.122 3.878 22 C -0.183 4.183 23 C -0.133 4.133 24 C -0.178 4.178 25 C 0.090 3.910 26 C 0.098 3.902 27 H 0.132 0.868 28 F -0.208 7.208 29 H 0.062 0.938 30 H 0.037 0.963 31 H 0.069 0.931 32 H 0.053 0.947 33 H 0.042 0.958 34 H 0.259 0.741 35 H 0.339 0.661 36 H 0.095 0.905 37 H 0.060 0.940 38 H 0.058 0.942 39 H 0.095 0.905 40 H 0.055 0.945 41 H 0.073 0.927 42 H 0.105 0.895 43 H 0.067 0.933 44 H 0.057 0.943 45 H 0.093 0.907 46 H 0.066 0.934 47 H 0.083 0.917 48 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.273 15.576 -11.020 22.687 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.162 4.162 3 C 0.106 3.894 4 H -0.014 1.014 5 C -0.628 4.628 6 H 0.061 0.939 7 C -0.227 4.227 8 N -0.574 5.574 9 Si 0.930 3.070 10 H -0.212 1.212 11 H -0.198 1.198 12 H -0.204 1.204 13 N -0.288 5.288 14 C -0.049 4.049 15 H 0.088 0.912 16 C -0.014 4.014 17 N -0.342 5.342 18 C 0.421 3.579 19 O -0.481 6.481 20 O -0.275 6.275 21 C 0.086 3.914 22 C -0.240 4.240 23 C -0.190 4.190 24 C -0.235 4.235 25 C -0.034 4.034 26 C 0.061 3.939 27 H 0.150 0.850 28 F -0.189 7.189 29 H 0.081 0.919 30 H 0.057 0.943 31 H 0.087 0.913 32 H 0.072 0.928 33 H 0.061 0.939 34 H 0.069 0.931 35 H 0.160 0.840 36 H 0.113 0.887 37 H 0.078 0.922 38 H 0.077 0.923 39 H 0.114 0.886 40 H 0.074 0.926 41 H 0.092 0.908 42 H 0.123 0.877 43 H 0.086 0.914 44 H 0.076 0.924 45 H 0.112 0.888 46 H 0.085 0.915 47 H 0.101 0.899 48 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -10.684 15.098 -10.002 21.027 hybrid contribution -1.795 0.356 0.211 1.843 sum -12.480 15.454 -9.790 22.146 Atomic orbital electron populations 1.21798 0.95191 1.01842 1.01266 1.21660 0.95198 0.98437 1.00870 1.19109 0.94631 0.90571 0.85109 1.01385 1.22268 0.92755 1.43913 1.03848 0.93920 1.26965 1.10122 0.93549 0.92027 1.70913 1.07472 1.46977 1.32086 0.83056 0.70579 0.77246 0.76153 1.21162 1.19755 1.20421 1.60558 1.37094 1.00715 1.30395 1.23177 0.94466 0.90421 0.96846 0.91194 1.22963 0.97902 0.79977 1.00583 1.46918 1.38598 1.10444 1.38258 1.17600 0.79619 0.80654 0.79982 1.90908 1.43772 1.80960 1.32431 1.86328 1.60952 1.18977 1.61230 1.22514 0.87393 0.87927 0.93587 1.22501 1.02822 1.03539 0.95109 1.21877 1.04092 0.91547 1.01483 1.22464 0.94998 1.03142 1.02941 1.22675 0.92031 0.97400 0.91252 1.22649 0.77261 0.95354 0.98683 0.85049 1.92815 1.35500 1.95278 1.95295 0.91890 0.94336 0.91260 0.92799 0.93921 0.93088 0.83988 0.88686 0.92189 0.92273 0.88614 0.92611 0.90755 0.87689 0.91384 0.92404 0.88796 0.91464 0.89890 0.86610 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.82 9.64 71.98 0.69 -4.13 16 2 C -0.12 -5.38 5.19 30.59 0.16 -5.22 16 3 C 0.21 10.19 1.54 44.17 0.07 10.26 16 4 H -0.03 -1.66 7.26 -2.38 -0.02 -1.68 16 5 C -0.59 -32.78 8.52 25.60 0.22 -32.57 16 6 H 0.04 2.46 7.82 -2.91 -0.02 2.44 16 7 C -0.03 -1.61 5.19 84.65 0.44 -1.17 16 8 N -0.94 -56.27 12.78 21.45 0.27 -56.00 16 9 Si 1.11 51.24 29.91 68.60 2.05 53.29 16 10 H -0.29 -13.25 7.11 99.48 0.71 -12.54 16 11 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 12 H -0.28 -12.31 7.11 99.48 0.71 -11.61 16 13 N -0.66 -25.03 6.19 -466.20 -2.89 -27.92 16 14 C 0.06 2.22 2.90 46.31 0.13 2.35 16 15 H 0.07 3.04 7.75 -2.39 -0.02 3.02 16 16 C 0.11 3.39 6.52 86.86 0.57 3.96 16 17 N -0.60 -17.13 3.33 -942.08 -3.13 -20.26 16 18 C 0.67 20.29 7.93 129.79 1.03 21.32 16 19 O -0.59 -20.89 12.14 19.81 0.24 -20.65 16 20 O -0.36 -9.18 9.49 -55.50 -0.53 -9.70 16 21 C 0.12 2.44 1.13 -10.79 -0.01 2.42 16 22 C -0.18 -3.88 8.37 71.98 0.60 -3.28 16 23 C -0.13 -1.67 8.85 71.98 0.64 -1.03 16 24 C -0.18 -3.38 8.37 71.98 0.60 -2.78 16 25 C 0.09 2.08 6.72 86.73 0.58 2.67 16 26 C 0.10 2.66 4.45 31.78 0.14 2.80 16 27 H 0.13 2.85 8.14 -2.38 -0.02 2.83 16 28 F -0.21 -6.92 17.19 44.97 0.77 -6.15 16 29 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 30 H 0.04 1.34 8.14 -2.39 -0.02 1.32 16 31 H 0.07 1.92 6.67 -2.38 -0.02 1.91 16 32 H 0.05 2.33 8.14 -2.38 -0.02 2.31 16 33 H 0.04 2.15 6.16 -2.39 -0.01 2.14 16 34 H 0.26 15.62 6.17 -92.71 -0.57 15.05 16 35 H 0.34 10.78 6.09 -89.69 -0.55 10.23 16 36 H 0.10 2.51 7.76 -2.39 -0.02 2.49 16 37 H 0.06 2.19 8.04 -2.39 -0.02 2.17 16 38 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 39 H 0.10 1.48 8.14 -2.39 -0.02 1.46 16 40 H 0.05 1.58 5.88 -2.38 -0.01 1.56 16 41 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 42 H 0.10 0.81 8.14 -2.39 -0.02 0.79 16 43 H 0.07 0.87 8.14 -2.38 -0.02 0.85 16 44 H 0.06 1.48 5.88 -2.39 -0.01 1.47 16 45 H 0.09 1.29 8.14 -2.39 -0.02 1.27 16 46 H 0.07 1.15 8.14 -2.38 -0.02 1.13 16 47 H 0.08 1.97 8.11 -2.39 -0.02 1.95 16 48 H 0.12 1.98 8.14 -2.39 -0.02 1.96 16 Total: -1.00 -69.71 378.94 3.25 -66.47 By element: Atomic # 1 Polarization: 24.71 SS G_CDS: 0.60 Total: 25.31 kcal Atomic # 6 Polarization: -10.25 SS G_CDS: 5.86 Total: -4.39 kcal Atomic # 7 Polarization: -98.43 SS G_CDS: -5.75 Total: -104.18 kcal Atomic # 8 Polarization: -30.07 SS G_CDS: -0.29 Total: -30.35 kcal Atomic # 9 Polarization: -6.92 SS G_CDS: 0.77 Total: -6.15 kcal Atomic # 14 Polarization: 51.24 SS G_CDS: 2.05 Total: 53.29 kcal Total: -69.71 3.25 -66.47 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255152007.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.322 kcal (2) G-P(sol) polarization free energy of solvation -69.715 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -155.036 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.248 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.467 kcal (6) G-S(sol) free energy of system = (1) + (5) -151.788 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds