Wall clock time and date at job start Tue Mar 31 2020 10:50:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53006 * 109.47395 * 2 1 4 4 H 1.09003 * 109.46755 * 55.10400 * 3 2 1 5 5 C 1.50699 * 109.47077 * 175.10153 * 3 2 1 6 6 H 1.08000 * 119.99764 * 120.00053 * 5 3 2 7 7 C 1.37874 * 120.00324 * 300.00598 * 5 3 2 8 8 N 1.31514 * 120.00224 * 179.72577 * 7 5 3 9 9 Si 1.86807 * 119.99946 * 359.97438 * 7 5 3 10 10 H 1.48498 * 109.46900 * 90.00429 * 9 7 5 11 11 H 1.48506 * 109.46993 * 210.00539 * 9 7 5 12 12 H 1.48503 * 109.47003 * 330.00328 * 9 7 5 13 13 N 1.46890 * 109.47277 * 295.10569 * 3 2 1 14 14 C 1.46908 * 111.00264 * 106.31343 * 13 3 2 15 15 H 1.09002 * 110.63643 * 328.07894 * 14 13 3 16 16 C 1.54320 * 110.71846 * 91.41674 * 14 13 3 17 17 N 1.47019 * 107.27004 * 140.55817 * 16 14 13 18 18 C 1.34776 * 125.64717 * 181.02127 * 17 16 14 19 19 O 1.21511 * 120.00232 * 0.02562 * 18 17 16 20 20 O 1.34641 * 120.00055 * 180.02562 * 18 17 16 21 21 C 1.45192 * 117.00002 * 179.97438 * 20 18 17 22 22 C 1.53003 * 109.47261 * 60.00253 * 21 20 18 23 23 C 1.53005 * 109.47240 * 179.97438 * 21 20 18 24 24 C 1.53002 * 109.47594 * 300.00162 * 21 20 18 25 25 C 1.47419 * 108.70343 * 1.05971 * 17 16 14 26 26 C 1.54905 * 104.83281 * 335.86793 * 25 17 16 27 27 H 1.09006 * 111.03680 * 155.09653 * 26 25 17 28 28 F 1.39893 * 111.00795 * 278.93892 * 26 25 17 29 29 H 1.09000 * 109.47195 * 305.29646 * 1 2 3 30 30 H 1.09005 * 109.47152 * 65.29227 * 1 2 3 31 31 H 1.08994 * 109.47558 * 185.29441 * 1 2 3 32 32 H 1.09004 * 109.47364 * 240.00008 * 2 1 3 33 33 H 1.09001 * 109.46918 * 120.00381 * 2 1 3 34 34 H 0.97003 * 120.00415 * 179.97438 * 8 7 5 35 35 H 1.00906 * 111.00005 * 342.36282 * 13 3 2 36 36 H 1.09002 * 109.88094 * 259.97631 * 16 14 13 37 37 H 1.09001 * 109.88489 * 21.13942 * 16 14 13 38 38 H 1.09004 * 109.47358 * 59.99124 * 22 21 20 39 39 H 1.08993 * 109.47556 * 179.97438 * 22 21 20 40 40 H 1.08998 * 109.47027 * 299.99849 * 22 21 20 41 41 H 1.09001 * 109.46465 * 60.00586 * 23 21 20 42 42 H 1.09002 * 109.47369 * 179.97438 * 23 21 20 43 43 H 1.08993 * 109.47252 * 300.00443 * 23 21 20 44 44 H 1.08998 * 109.46982 * 59.99974 * 24 21 20 45 45 H 1.09005 * 109.47008 * 180.02562 * 24 21 20 46 46 H 1.09001 * 109.46854 * 299.99703 * 24 21 20 47 47 H 1.09001 * 110.36658 * 217.03299 * 25 17 16 48 48 H 1.09005 * 110.37134 * 94.70903 * 25 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6068 1.9810 0.8429 5 6 3.5421 1.4442 0.1213 6 1 4.1461 1.8892 -0.6556 7 6 4.1454 0.8775 1.2240 8 7 5.4564 0.8741 1.3273 9 14 3.1007 0.1083 2.5681 10 1 2.8783 -1.3276 2.2614 11 1 3.8007 0.2334 3.8718 12 1 1.7925 0.8076 2.6395 13 7 1.6493 2.1001 -1.2540 14 6 0.5580 3.0574 -1.0288 15 1 -0.0887 2.7192 -0.2191 16 6 1.1184 4.4646 -0.7338 17 7 0.2523 5.4326 -1.4226 18 6 0.4179 6.7701 -1.4277 19 8 1.3484 7.2695 -0.8266 20 8 -0.4476 7.5531 -2.0990 21 6 -0.2080 8.9846 -2.0605 22 6 1.1680 9.2876 -2.6569 23 6 -1.2856 9.7042 -2.8741 24 6 -0.2535 9.4706 -0.6104 25 6 -0.8277 4.6979 -2.1060 26 6 -0.2591 3.2745 -2.3298 27 1 -1.0614 2.5414 -2.4141 28 9 0.5709 3.2372 -3.4553 29 1 -0.3633 0.5938 0.8387 30 1 -0.3634 0.4296 -0.9336 31 1 -0.3634 -1.0232 0.0948 32 1 1.8933 -0.5138 -0.8900 33 1 1.8932 -0.5139 0.8900 34 1 5.8809 0.4758 2.1033 35 1 1.3949 1.4201 -1.9549 36 1 1.1032 4.6521 0.3399 37 1 2.1377 4.5445 -1.1117 38 1 1.2006 8.9413 -3.6900 39 1 1.3478 10.3622 -2.6284 40 1 1.9360 8.7750 -2.0777 41 1 -2.2660 9.4884 -2.4495 42 1 -1.1059 10.7789 -2.8448 43 1 -1.2527 9.3579 -3.9071 44 1 0.5144 8.9579 -0.0311 45 1 -0.0740 10.5453 -0.5816 46 1 -1.2338 9.2548 -0.1855 47 1 -1.0606 5.1679 -3.0615 48 1 -1.7163 4.6568 -1.4760 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255152008.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:50:45 Heat of formation + Delta-G solvation = -116.498569 kcal Electronic energy + Delta-G solvation = -28370.694170 eV Core-core repulsion = 24375.672131 eV Total energy + Delta-G solvation = -3995.022040 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.195 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -47.50006 -40.73081 -38.57327 -36.89774 -35.88765 -34.10961 -32.50497 -31.63292 -29.76806 -28.27505 -27.56627 -27.48252 -26.78191 -23.81775 -22.54337 -21.81282 -20.49577 -20.10527 -19.38326 -18.03525 -17.12458 -16.70345 -16.58938 -16.03016 -15.60201 -15.25480 -14.85143 -14.62843 -14.47010 -14.18352 -13.93491 -13.78330 -13.61579 -13.12003 -12.98268 -12.69571 -12.67708 -12.50268 -12.30092 -12.04241 -12.01242 -11.93661 -11.92583 -11.68842 -11.49966 -11.38928 -11.22069 -10.99722 -10.85619 -10.62144 -10.42992 -10.32859 -9.98607 -9.95847 -9.47196 -9.26206 -8.66512 -8.55566 -7.58891 -6.03941 -4.01295 2.06682 2.91206 3.22669 3.31590 3.36491 3.78772 4.10636 4.34014 4.38388 4.56626 4.58256 4.61911 4.67709 4.76585 5.06652 5.18884 5.26245 5.29170 5.34303 5.38157 5.43948 5.52812 5.53758 5.57956 5.60966 5.70106 5.73602 5.80944 5.82078 5.89401 5.99924 6.16624 6.19546 6.23097 6.30821 6.36621 6.42344 6.47327 6.55980 6.64687 7.00929 7.49193 7.67036 7.79178 8.12640 8.39357 8.67683 9.11391 9.57717 11.09515 Molecular weight = 316.19amu Principal moments of inertia in cm(-1) A = 0.018222 B = 0.003515 C = 0.003215 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1536.241439 B = 7962.898245 C = 8705.773929 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.159 4.159 3 C 0.190 3.810 4 H 0.029 0.971 5 C -0.495 4.495 6 H 0.084 0.916 7 C 0.067 3.933 8 N -0.898 5.898 9 Si 0.881 3.119 10 H -0.280 1.280 11 H -0.297 1.297 12 H -0.269 1.269 13 N -0.653 5.653 14 C 0.056 3.944 15 H 0.074 0.926 16 C 0.134 3.866 17 N -0.600 5.600 18 C 0.668 3.332 19 O -0.560 6.560 20 O -0.365 6.365 21 C 0.136 3.864 22 C -0.185 4.185 23 C -0.139 4.139 24 C -0.184 4.184 25 C 0.083 3.917 26 C 0.072 3.928 27 H 0.105 0.895 28 F -0.188 7.188 29 H 0.047 0.953 30 H 0.045 0.955 31 H 0.045 0.955 32 H 0.066 0.934 33 H 0.057 0.943 34 H 0.263 0.737 35 H 0.338 0.662 36 H 0.073 0.927 37 H 0.096 0.904 38 H 0.059 0.941 39 H 0.069 0.931 40 H 0.090 0.910 41 H 0.065 0.935 42 H 0.079 0.921 43 H 0.066 0.934 44 H 0.089 0.911 45 H 0.069 0.931 46 H 0.058 0.942 47 H 0.090 0.910 48 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.176 11.613 -7.435 22.814 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.197 4.197 3 C 0.081 3.919 4 H 0.046 0.954 5 C -0.534 4.534 6 H 0.102 0.898 7 C -0.134 4.134 8 N -0.537 5.537 9 Si 0.712 3.288 10 H -0.207 1.207 11 H -0.224 1.224 12 H -0.194 1.194 13 N -0.285 5.285 14 C -0.057 4.057 15 H 0.092 0.908 16 C 0.013 3.987 17 N -0.342 5.342 18 C 0.423 3.577 19 O -0.449 6.449 20 O -0.280 6.280 21 C 0.099 3.901 22 C -0.242 4.242 23 C -0.196 4.196 24 C -0.241 4.241 25 C -0.041 4.041 26 C 0.035 3.965 27 H 0.122 0.878 28 F -0.169 7.169 29 H 0.066 0.934 30 H 0.064 0.936 31 H 0.064 0.936 32 H 0.084 0.916 33 H 0.075 0.925 34 H 0.073 0.927 35 H 0.158 0.842 36 H 0.091 0.909 37 H 0.114 0.886 38 H 0.078 0.922 39 H 0.087 0.913 40 H 0.108 0.892 41 H 0.084 0.916 42 H 0.098 0.902 43 H 0.085 0.915 44 H 0.108 0.892 45 H 0.088 0.912 46 H 0.077 0.923 47 H 0.109 0.891 48 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -17.196 12.358 -7.136 22.346 hybrid contribution -1.175 -1.137 0.957 1.894 sum -18.371 11.221 -6.180 22.396 Atomic orbital electron populations 1.21931 0.98148 1.00729 1.00527 1.22626 0.93168 1.01802 1.02138 1.19808 0.97268 0.88080 0.86707 0.95378 1.21024 0.88764 1.36968 1.06611 0.89773 1.24961 0.94728 0.96005 0.97726 1.69879 1.08488 1.45594 1.29719 0.86971 0.80586 0.79649 0.81631 1.20713 1.22412 1.19404 1.60421 1.35413 1.20784 1.11882 1.23171 0.92951 0.94445 0.95101 0.90795 1.22106 0.95110 0.84743 0.96774 1.47069 1.30610 1.02364 1.54131 1.17396 0.80773 0.81052 0.78473 1.90926 1.33303 1.72663 1.48017 1.86275 1.52554 1.20151 1.68995 1.22044 0.96401 0.75032 0.96627 1.22525 0.97172 1.02736 1.01738 1.21845 0.97869 0.99705 1.00193 1.22521 1.03670 1.02190 0.95698 1.22873 0.90789 0.91508 0.98952 1.22881 0.92215 0.97348 0.84077 0.87772 1.92863 1.74172 1.97346 1.52479 0.93397 0.93604 0.93551 0.91556 0.92506 0.92684 0.84235 0.90866 0.88607 0.92159 0.91253 0.89159 0.91607 0.90229 0.91511 0.89219 0.91232 0.92305 0.89121 0.89592 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.37 8.89 37.15 0.33 -2.04 16 2 C -0.16 -3.12 4.72 -26.73 -0.13 -3.24 16 3 C 0.19 4.13 1.70 -68.87 -0.12 4.01 16 4 H 0.03 0.64 6.46 -51.93 -0.34 0.30 16 5 C -0.50 -13.58 9.42 -34.44 -0.32 -13.90 16 6 H 0.08 2.59 8.06 -52.49 -0.42 2.17 16 7 C 0.07 1.90 5.45 -17.82 -0.10 1.81 16 8 N -0.90 -27.40 13.96 55.43 0.77 -26.62 16 9 Si 0.88 21.32 24.41 -169.99 -4.15 17.17 16 10 H -0.28 -6.59 6.83 56.52 0.39 -6.20 16 11 H -0.30 -7.31 7.11 56.52 0.40 -6.91 16 12 H -0.27 -6.13 6.53 56.52 0.37 -5.76 16 13 N -0.65 -12.19 5.58 -99.03 -0.55 -12.74 16 14 C 0.06 0.84 2.37 -65.88 -0.16 0.68 16 15 H 0.07 1.04 6.99 -51.93 -0.36 0.67 16 16 C 0.13 2.27 6.62 -3.07 -0.02 2.25 16 17 N -0.60 -8.98 3.33 -176.31 -0.59 -9.57 16 18 C 0.67 10.69 7.93 54.05 0.43 11.12 16 19 O -0.56 -10.37 12.21 -19.28 -0.24 -10.61 16 20 O -0.36 -4.93 9.42 -40.33 -0.38 -5.30 16 21 C 0.14 1.51 1.13 -90.61 -0.10 1.41 16 22 C -0.18 -2.10 8.37 37.16 0.31 -1.79 16 23 C -0.14 -1.09 8.85 37.16 0.33 -0.76 16 24 C -0.18 -2.00 8.37 37.16 0.31 -1.69 16 25 C 0.08 0.93 6.73 -2.53 -0.02 0.91 16 26 C 0.07 0.87 4.45 -24.58 -0.11 0.76 16 27 H 0.10 0.91 8.14 -51.93 -0.42 0.48 16 28 F -0.19 -2.84 16.62 2.25 0.04 -2.80 16 29 H 0.05 0.72 8.12 -51.93 -0.42 0.30 16 30 H 0.04 0.59 7.19 -51.93 -0.37 0.22 16 31 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 32 H 0.07 1.28 8.06 -51.93 -0.42 0.87 16 33 H 0.06 1.23 3.22 -51.93 -0.17 1.06 16 34 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 35 H 0.34 5.83 7.19 -39.29 -0.28 5.55 16 36 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 37 H 0.10 1.93 8.03 -51.93 -0.42 1.51 16 38 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 39 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 40 H 0.09 1.31 5.88 -51.93 -0.31 1.00 16 41 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 42 H 0.08 0.48 8.14 -51.93 -0.42 0.05 16 43 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 44 H 0.09 1.24 5.88 -51.93 -0.31 0.93 16 45 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 46 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 47 H 0.09 0.95 8.04 -51.93 -0.42 0.54 16 48 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 LS Contribution 371.97 15.07 5.61 5.61 Total: -1.00 -32.10 371.97 -6.91 -39.01 By element: Atomic # 1 Polarization: 14.39 SS G_CDS: -8.06 Total: 6.32 kcal Atomic # 6 Polarization: -1.11 SS G_CDS: 0.64 Total: -0.47 kcal Atomic # 7 Polarization: -48.57 SS G_CDS: -0.36 Total: -48.94 kcal Atomic # 8 Polarization: -15.30 SS G_CDS: -0.62 Total: -15.91 kcal Atomic # 9 Polarization: -2.84 SS G_CDS: 0.04 Total: -2.80 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -4.15 Total: 17.17 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -32.10 -6.91 -39.01 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255152008.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.486 kcal (2) G-P(sol) polarization free energy of solvation -32.102 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.589 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.910 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.012 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.499 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds