Wall clock time and date at job start Tue Mar 31 2020 10:50:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53006 * 109.47395 * 2 1 4 4 H 1.09003 * 109.46755 * 55.10400 * 3 2 1 5 5 C 1.50699 * 109.47077 * 175.10153 * 3 2 1 6 6 H 1.08000 * 119.99764 * 120.00053 * 5 3 2 7 7 C 1.37874 * 120.00324 * 300.00598 * 5 3 2 8 8 N 1.31514 * 120.00224 * 179.72577 * 7 5 3 9 9 Si 1.86807 * 119.99946 * 359.97438 * 7 5 3 10 10 H 1.48498 * 109.46900 * 90.00429 * 9 7 5 11 11 H 1.48506 * 109.46993 * 210.00539 * 9 7 5 12 12 H 1.48503 * 109.47003 * 330.00328 * 9 7 5 13 13 N 1.46890 * 109.47277 * 295.10569 * 3 2 1 14 14 C 1.46908 * 111.00264 * 106.31343 * 13 3 2 15 15 H 1.09002 * 110.63643 * 328.07894 * 14 13 3 16 16 C 1.54320 * 110.71846 * 91.41674 * 14 13 3 17 17 N 1.47019 * 107.27004 * 140.55817 * 16 14 13 18 18 C 1.34776 * 125.64717 * 181.02127 * 17 16 14 19 19 O 1.21511 * 120.00232 * 0.02562 * 18 17 16 20 20 O 1.34641 * 120.00055 * 180.02562 * 18 17 16 21 21 C 1.45192 * 117.00002 * 179.97438 * 20 18 17 22 22 C 1.53003 * 109.47261 * 60.00253 * 21 20 18 23 23 C 1.53005 * 109.47240 * 179.97438 * 21 20 18 24 24 C 1.53002 * 109.47594 * 300.00162 * 21 20 18 25 25 C 1.47419 * 108.70343 * 1.05971 * 17 16 14 26 26 C 1.54905 * 104.83281 * 335.86793 * 25 17 16 27 27 H 1.09006 * 111.03680 * 155.09653 * 26 25 17 28 28 F 1.39893 * 111.00795 * 278.93892 * 26 25 17 29 29 H 1.09000 * 109.47195 * 305.29646 * 1 2 3 30 30 H 1.09005 * 109.47152 * 65.29227 * 1 2 3 31 31 H 1.08994 * 109.47558 * 185.29441 * 1 2 3 32 32 H 1.09004 * 109.47364 * 240.00008 * 2 1 3 33 33 H 1.09001 * 109.46918 * 120.00381 * 2 1 3 34 34 H 0.97003 * 120.00415 * 179.97438 * 8 7 5 35 35 H 1.00906 * 111.00005 * 342.36282 * 13 3 2 36 36 H 1.09002 * 109.88094 * 259.97631 * 16 14 13 37 37 H 1.09001 * 109.88489 * 21.13942 * 16 14 13 38 38 H 1.09004 * 109.47358 * 59.99124 * 22 21 20 39 39 H 1.08993 * 109.47556 * 179.97438 * 22 21 20 40 40 H 1.08998 * 109.47027 * 299.99849 * 22 21 20 41 41 H 1.09001 * 109.46465 * 60.00586 * 23 21 20 42 42 H 1.09002 * 109.47369 * 179.97438 * 23 21 20 43 43 H 1.08993 * 109.47252 * 300.00443 * 23 21 20 44 44 H 1.08998 * 109.46982 * 59.99974 * 24 21 20 45 45 H 1.09005 * 109.47008 * 180.02562 * 24 21 20 46 46 H 1.09001 * 109.46854 * 299.99703 * 24 21 20 47 47 H 1.09001 * 110.36658 * 217.03299 * 25 17 16 48 48 H 1.09005 * 110.37134 * 94.70903 * 25 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6068 1.9810 0.8429 5 6 3.5421 1.4442 0.1213 6 1 4.1461 1.8892 -0.6556 7 6 4.1454 0.8775 1.2240 8 7 5.4564 0.8741 1.3273 9 14 3.1007 0.1083 2.5681 10 1 2.8783 -1.3276 2.2614 11 1 3.8007 0.2334 3.8718 12 1 1.7925 0.8076 2.6395 13 7 1.6493 2.1001 -1.2540 14 6 0.5580 3.0574 -1.0288 15 1 -0.0887 2.7192 -0.2191 16 6 1.1184 4.4646 -0.7338 17 7 0.2523 5.4326 -1.4226 18 6 0.4179 6.7701 -1.4277 19 8 1.3484 7.2695 -0.8266 20 8 -0.4476 7.5531 -2.0990 21 6 -0.2080 8.9846 -2.0605 22 6 1.1680 9.2876 -2.6569 23 6 -1.2856 9.7042 -2.8741 24 6 -0.2535 9.4706 -0.6104 25 6 -0.8277 4.6979 -2.1060 26 6 -0.2591 3.2745 -2.3298 27 1 -1.0614 2.5414 -2.4141 28 9 0.5709 3.2372 -3.4553 29 1 -0.3633 0.5938 0.8387 30 1 -0.3634 0.4296 -0.9336 31 1 -0.3634 -1.0232 0.0948 32 1 1.8933 -0.5138 -0.8900 33 1 1.8932 -0.5139 0.8900 34 1 5.8809 0.4758 2.1033 35 1 1.3949 1.4201 -1.9549 36 1 1.1032 4.6521 0.3399 37 1 2.1377 4.5445 -1.1117 38 1 1.2006 8.9413 -3.6900 39 1 1.3478 10.3622 -2.6284 40 1 1.9360 8.7750 -2.0777 41 1 -2.2660 9.4884 -2.4495 42 1 -1.1059 10.7789 -2.8448 43 1 -1.2527 9.3579 -3.9071 44 1 0.5144 8.9579 -0.0311 45 1 -0.0740 10.5453 -0.5816 46 1 -1.2338 9.2548 -0.1855 47 1 -1.0606 5.1679 -3.0615 48 1 -1.7163 4.6568 -1.4760 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255152008.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:50:45 Heat of formation + Delta-G solvation = -139.755995 kcal Electronic energy + Delta-G solvation = -28371.702688 eV Core-core repulsion = 24375.672131 eV Total energy + Delta-G solvation = -3996.030557 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.195 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -48.57843 -41.85954 -39.76776 -38.23268 -37.22210 -35.11555 -34.40040 -33.11409 -30.93287 -29.63703 -28.47597 -28.37786 -28.27288 -25.10227 -24.07361 -22.84833 -21.92135 -21.50669 -20.48747 -19.23420 -18.66818 -18.25424 -17.64835 -17.18989 -16.88650 -16.67145 -16.14162 -15.80366 -15.65758 -15.40329 -15.28438 -14.98416 -14.81206 -14.59237 -14.30059 -13.95038 -13.72952 -13.53172 -13.46292 -13.32313 -13.11778 -12.93951 -12.88662 -12.85731 -12.80496 -12.49443 -12.46171 -12.36771 -12.32544 -12.01410 -11.73612 -11.54372 -11.40983 -11.28871 -11.16840 -11.11068 -10.68208 -9.86962 -9.09882 -8.24054 -6.26176 0.95488 1.29723 1.35712 1.45755 1.69029 2.33528 2.79330 3.08795 3.10139 3.27494 3.29374 3.69451 3.75609 3.79414 3.94558 4.13195 4.15592 4.29260 4.34449 4.36329 4.45028 4.46301 4.50135 4.60598 4.66336 4.69155 4.75711 4.80326 4.83255 4.83782 4.88729 4.97879 5.06858 5.07747 5.15397 5.17549 5.20439 5.27939 5.34578 5.42794 5.50153 5.71725 6.01237 6.32245 6.63477 6.76376 6.82880 7.20021 7.38068 8.93959 Molecular weight = 316.19amu Principal moments of inertia in cm(-1) A = 0.018222 B = 0.003515 C = 0.003215 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1536.241439 B = 7962.898245 C = 8705.773929 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.157 4.157 3 C 0.199 3.801 4 H 0.027 0.973 5 C -0.500 4.500 6 H 0.027 0.973 7 C 0.002 3.998 8 N -0.956 5.956 9 Si 0.952 3.048 10 H -0.265 1.265 11 H -0.305 1.305 12 H -0.241 1.241 13 N -0.673 5.673 14 C 0.058 3.942 15 H 0.101 0.899 16 C 0.137 3.863 17 N -0.603 5.603 18 C 0.662 3.338 19 O -0.597 6.597 20 O -0.358 6.358 21 C 0.123 3.877 22 C -0.183 4.183 23 C -0.131 4.131 24 C -0.180 4.180 25 C 0.082 3.918 26 C 0.078 3.922 27 H 0.157 0.843 28 F -0.209 7.209 29 H 0.054 0.946 30 H 0.072 0.928 31 H 0.065 0.935 32 H 0.062 0.938 33 H 0.038 0.962 34 H 0.263 0.737 35 H 0.348 0.652 36 H 0.060 0.940 37 H 0.047 0.953 38 H 0.060 0.940 39 H 0.094 0.906 40 H 0.052 0.948 41 H 0.074 0.926 42 H 0.103 0.897 43 H 0.070 0.930 44 H 0.053 0.947 45 H 0.093 0.907 46 H 0.067 0.933 47 H 0.102 0.898 48 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.304 11.514 -7.876 27.161 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.196 4.196 3 C 0.090 3.910 4 H 0.045 0.955 5 C -0.539 4.539 6 H 0.046 0.954 7 C -0.194 4.194 8 N -0.597 5.597 9 Si 0.779 3.221 10 H -0.191 1.191 11 H -0.234 1.234 12 H -0.164 1.164 13 N -0.306 5.306 14 C -0.054 4.054 15 H 0.119 0.881 16 C 0.014 3.986 17 N -0.344 5.344 18 C 0.417 3.583 19 O -0.488 6.488 20 O -0.273 6.273 21 C 0.087 3.913 22 C -0.240 4.240 23 C -0.188 4.188 24 C -0.237 4.237 25 C -0.040 4.040 26 C 0.041 3.959 27 H 0.175 0.825 28 F -0.190 7.190 29 H 0.073 0.927 30 H 0.091 0.909 31 H 0.084 0.916 32 H 0.080 0.920 33 H 0.056 0.944 34 H 0.072 0.928 35 H 0.169 0.831 36 H 0.079 0.921 37 H 0.065 0.935 38 H 0.079 0.921 39 H 0.113 0.887 40 H 0.071 0.929 41 H 0.093 0.907 42 H 0.122 0.878 43 H 0.089 0.911 44 H 0.072 0.928 45 H 0.111 0.889 46 H 0.086 0.914 47 H 0.120 0.880 48 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -22.388 12.263 -7.630 26.642 hybrid contribution 0.529 -0.955 0.976 1.465 sum -21.858 11.307 -6.654 25.493 Atomic orbital electron populations 1.21867 0.93784 1.02575 1.02354 1.22463 0.97022 0.98999 1.01079 1.19502 0.93223 0.90251 0.88040 0.95510 1.21400 0.92122 1.35456 1.04921 0.95444 1.25903 0.95888 0.96850 1.00724 1.70078 1.10982 1.47783 1.30895 0.85811 0.79562 0.79508 0.77205 1.19093 1.23376 1.16408 1.60049 1.38288 1.21366 1.10875 1.23193 0.92337 0.91695 0.98170 0.88117 1.21875 0.93576 0.87121 0.95998 1.47114 1.31221 1.02040 1.54064 1.17640 0.80699 0.81591 0.78349 1.90917 1.34843 1.73555 1.49478 1.86291 1.51532 1.21305 1.68153 1.22480 0.97438 0.73990 0.97421 1.22494 0.96548 1.03933 1.00999 1.21863 0.96801 1.00523 0.99607 1.22473 1.02838 1.03257 0.95122 1.23215 0.90506 0.90319 0.99933 1.23219 0.92119 0.99207 0.81360 0.82534 1.92831 1.75161 1.97516 1.53511 0.92682 0.90905 0.91551 0.91966 0.94352 0.92836 0.83076 0.92146 0.93480 0.92052 0.88734 0.92941 0.90676 0.87843 0.91137 0.92779 0.88869 0.91430 0.88010 0.85789 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.75 8.89 71.98 0.64 -3.11 16 2 C -0.16 -5.78 4.72 30.59 0.14 -5.64 16 3 C 0.20 8.58 1.70 44.17 0.07 8.65 16 4 H 0.03 1.18 6.46 -2.39 -0.02 1.16 16 5 C -0.50 -28.79 9.42 25.60 0.24 -28.55 16 6 H 0.03 1.83 8.06 -2.91 -0.02 1.80 16 7 C 0.00 0.13 5.45 84.65 0.46 0.59 16 8 N -0.96 -61.58 13.96 21.45 0.30 -61.28 16 9 Si 0.95 44.48 24.41 68.60 1.67 46.15 16 10 H -0.26 -11.65 6.83 99.48 0.68 -10.97 16 11 H -0.31 -14.59 7.11 99.48 0.71 -13.88 16 12 H -0.24 -10.02 6.53 99.48 0.65 -9.37 16 13 N -0.67 -24.80 5.58 -467.24 -2.60 -27.41 16 14 C 0.06 1.62 2.37 46.10 0.11 1.73 16 15 H 0.10 2.39 6.99 -2.39 -0.02 2.37 16 16 C 0.14 4.76 6.62 86.73 0.57 5.34 16 17 N -0.60 -17.75 3.33 -942.12 -3.13 -20.89 16 18 C 0.66 21.50 7.93 129.79 1.03 22.53 16 19 O -0.60 -23.51 12.21 19.80 0.24 -23.27 16 20 O -0.36 -9.31 9.42 -55.50 -0.52 -9.83 16 21 C 0.12 2.58 1.13 -10.79 -0.01 2.57 16 22 C -0.18 -4.13 8.37 71.98 0.60 -3.53 16 23 C -0.13 -1.64 8.85 71.98 0.64 -1.01 16 24 C -0.18 -3.75 8.37 71.98 0.60 -3.15 16 25 C 0.08 1.56 6.73 86.85 0.58 2.15 16 26 C 0.08 1.58 4.45 31.98 0.14 1.72 16 27 H 0.16 1.68 8.14 -2.38 -0.02 1.66 16 28 F -0.21 -5.93 16.62 44.97 0.75 -5.19 16 29 H 0.05 1.33 8.12 -2.39 -0.02 1.31 16 30 H 0.07 1.44 7.19 -2.38 -0.02 1.43 16 31 H 0.07 1.45 8.14 -2.39 -0.02 1.44 16 32 H 0.06 2.31 8.06 -2.38 -0.02 2.29 16 33 H 0.04 1.56 3.22 -2.39 -0.01 1.55 16 34 H 0.26 15.88 8.31 -92.71 -0.77 15.11 16 35 H 0.35 11.47 7.19 -89.69 -0.64 10.82 16 36 H 0.06 2.19 8.14 -2.39 -0.02 2.17 16 37 H 0.05 2.06 8.03 -2.39 -0.02 2.04 16 38 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 39 H 0.09 1.59 8.14 -2.39 -0.02 1.57 16 40 H 0.05 1.61 5.88 -2.39 -0.01 1.60 16 41 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 42 H 0.10 0.83 8.14 -2.39 -0.02 0.81 16 43 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 44 H 0.05 1.55 5.88 -2.39 -0.01 1.53 16 45 H 0.09 1.45 8.14 -2.38 -0.02 1.43 16 46 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 47 H 0.10 1.77 8.04 -2.39 -0.02 1.75 16 48 H 0.12 1.50 8.14 -2.38 -0.02 1.48 16 Total: -1.00 -78.84 371.97 2.75 -76.09 By element: Atomic # 1 Polarization: 25.09 SS G_CDS: 0.22 Total: 25.31 kcal Atomic # 6 Polarization: -5.53 SS G_CDS: 5.83 Total: 0.30 kcal Atomic # 7 Polarization: -104.14 SS G_CDS: -5.44 Total: -109.58 kcal Atomic # 8 Polarization: -32.81 SS G_CDS: -0.28 Total: -33.10 kcal Atomic # 9 Polarization: -5.93 SS G_CDS: 0.75 Total: -5.19 kcal Atomic # 14 Polarization: 44.48 SS G_CDS: 1.67 Total: 46.15 kcal Total: -78.84 2.75 -76.09 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255152008.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.666 kcal (2) G-P(sol) polarization free energy of solvation -78.844 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.511 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.755 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.090 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.756 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds