Wall clock time and date at job start Tue Mar 31 2020 10:50:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52999 * 109.47169 * 2 1 4 4 H 1.09003 * 109.46938 * 305.61975 * 3 2 1 5 5 C 1.50708 * 109.47119 * 185.62282 * 3 2 1 6 6 H 1.07992 * 119.99417 * 239.99867 * 5 3 2 7 7 C 1.37867 * 119.99960 * 59.99608 * 5 3 2 8 8 N 1.31512 * 120.00472 * 0.02562 * 7 5 3 9 9 Si 1.86801 * 119.99834 * 180.02562 * 7 5 3 10 10 H 1.48500 * 109.47068 * 59.99929 * 9 7 5 11 11 H 1.48502 * 109.47300 * 180.02562 * 9 7 5 12 12 H 1.48503 * 109.47147 * 299.99931 * 9 7 5 13 13 N 1.46892 * 109.47207 * 65.61989 * 3 2 1 14 14 C 1.46903 * 110.99703 * 204.11299 * 13 3 2 15 15 H 1.08991 * 110.64630 * 327.76118 * 14 13 3 16 16 C 1.54331 * 110.72065 * 91.10047 * 14 13 3 17 17 N 1.47018 * 107.27291 * 140.55440 * 16 14 13 18 18 C 1.34779 * 125.65101 * 181.02870 * 17 16 14 19 19 O 1.21512 * 119.99625 * 0.02562 * 18 17 16 20 20 O 1.34631 * 120.00227 * 180.02562 * 18 17 16 21 21 C 1.45199 * 116.99923 * 179.97438 * 20 18 17 22 22 C 1.52994 * 109.47335 * 59.99685 * 21 20 18 23 23 C 1.53007 * 109.47036 * 179.97438 * 21 20 18 24 24 C 1.53001 * 109.47093 * 299.99615 * 21 20 18 25 25 C 1.47424 * 108.70484 * 1.05603 * 17 16 14 26 26 C 1.54912 * 104.83175 * 335.87659 * 25 17 16 27 27 H 1.09005 * 111.00586 * 155.08037 * 26 25 17 28 28 F 1.39905 * 111.00261 * 278.92990 * 26 25 17 29 29 H 1.09000 * 109.46577 * 54.33402 * 1 2 3 30 30 H 1.08998 * 109.46646 * 174.32488 * 1 2 3 31 31 H 1.08999 * 109.46976 * 294.32731 * 1 2 3 32 32 H 1.09000 * 109.47522 * 239.99806 * 2 1 3 33 33 H 1.09005 * 109.46899 * 119.99724 * 2 1 3 34 34 H 0.96999 * 120.00136 * 180.02562 * 8 7 5 35 35 H 1.00894 * 111.00252 * 328.06572 * 13 3 2 36 36 H 1.08994 * 109.87866 * 259.97578 * 16 14 13 37 37 H 1.09003 * 109.88116 * 21.13924 * 16 14 13 38 38 H 1.09003 * 109.47480 * 60.00031 * 22 21 20 39 39 H 1.09007 * 109.47361 * 179.97438 * 22 21 20 40 40 H 1.08996 * 109.47139 * 300.00118 * 22 21 20 41 41 H 1.09003 * 109.47322 * 60.00052 * 23 21 20 42 42 H 1.09004 * 109.46661 * 179.97438 * 23 21 20 43 43 H 1.08997 * 109.47141 * 299.99841 * 23 21 20 44 44 H 1.08996 * 109.46975 * 60.00131 * 24 21 20 45 45 H 1.08996 * 109.47118 * 180.02562 * 24 21 20 46 46 H 1.09003 * 109.47228 * 299.99925 * 24 21 20 47 47 H 1.08995 * 110.37300 * 217.03353 * 25 17 16 48 48 H 1.09006 * 110.36768 * 94.70958 * 25 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5968 1.9845 -0.8354 5 6 3.5407 1.4448 -0.1392 6 1 4.1538 1.8865 0.6323 7 6 4.1306 0.8828 -1.2514 8 7 3.3840 0.3452 -2.1911 9 14 5.9907 0.8850 -1.4236 10 1 6.5940 0.1462 -0.2855 11 1 6.3706 0.2263 -2.6991 12 1 6.4862 2.2849 -1.4233 13 7 1.6643 2.0947 1.2614 14 6 1.6043 3.5538 1.1021 15 1 2.3366 3.8907 0.3685 16 6 0.1818 4.0017 0.7047 17 7 -0.1037 5.2460 1.4339 18 6 -1.2545 5.9450 1.3744 19 8 -2.1664 5.5552 0.6722 20 8 -1.3937 7.0750 2.0928 21 6 -2.6600 7.7764 1.9795 22 6 -3.7948 6.8571 2.4352 23 6 -2.6314 9.0263 2.8615 24 6 -2.8882 8.1848 0.5228 25 6 1.0775 5.6029 2.2407 26 6 1.8246 4.2643 2.4637 27 1 2.8853 4.4348 2.6483 28 9 1.2466 3.5356 3.5088 29 1 -0.3632 0.5992 -0.8349 30 1 -0.3632 -1.0226 -0.1016 31 1 -0.3633 0.4233 0.9364 32 1 1.8934 -0.5138 -0.8899 33 1 1.8933 -0.5138 0.8901 34 1 3.7991 -0.0504 -2.9734 35 1 0.7890 1.7327 1.6090 36 1 0.1367 4.1826 -0.3691 37 1 -0.5400 3.2343 0.9842 38 1 -3.6323 6.5661 3.4730 39 1 -4.7454 7.3838 2.3505 40 1 -3.8153 5.9664 1.8072 41 1 -1.8229 9.6815 2.5373 42 1 -3.5819 9.5531 2.7761 43 1 -2.4691 8.7351 3.8993 44 1 -2.9087 7.2941 -0.1053 45 1 -3.8385 8.7117 0.4377 46 1 -2.0797 8.8398 0.1981 47 1 0.7701 6.0295 3.1954 48 1 1.7104 6.3044 1.6970 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255152009.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:50:48 Heat of formation + Delta-G solvation = -128.609357 kcal Electronic energy + Delta-G solvation = -28284.241661 eV Core-core repulsion = 24288.694458 eV Total energy + Delta-G solvation = -3995.547203 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.195 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -47.23425 -40.76547 -38.52027 -36.71137 -35.66102 -34.12996 -32.53199 -31.35977 -29.56311 -28.01581 -27.58925 -27.52686 -26.12129 -23.90047 -22.68675 -21.67319 -20.37684 -19.74585 -19.41446 -17.97146 -16.87264 -16.58272 -16.26402 -15.90226 -15.60093 -15.09801 -14.68894 -14.66865 -14.42550 -14.17025 -13.88143 -13.65723 -13.43649 -12.81005 -12.69773 -12.66867 -12.58889 -12.33930 -12.18902 -12.05816 -11.99056 -11.97610 -11.59250 -11.46833 -11.29140 -11.21877 -10.97092 -10.80756 -10.71022 -10.67102 -10.46170 -10.02962 -10.01750 -9.71818 -9.62163 -9.19035 -8.72112 -8.41025 -7.42874 -6.02652 -4.08107 2.05216 2.86351 3.30280 3.35642 3.38169 3.79805 4.31735 4.39317 4.54643 4.58600 4.59359 4.73175 4.87581 4.95231 5.25364 5.26795 5.29500 5.35100 5.37230 5.49723 5.51056 5.52701 5.57774 5.60026 5.69413 5.78620 5.86341 6.02214 6.12496 6.14529 6.15003 6.15611 6.21932 6.39364 6.41163 6.43325 6.82234 7.00847 7.08478 7.38157 7.47193 7.71047 7.82946 8.12156 8.29854 8.34688 8.60313 8.98910 9.57407 11.02522 Molecular weight = 316.19amu Principal moments of inertia in cm(-1) A = 0.020011 B = 0.003207 C = 0.003123 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1398.887664 B = 8728.683528 C = 8962.977614 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.126 4.126 3 C 0.218 3.782 4 H 0.006 0.994 5 C -0.500 4.500 6 H 0.062 0.938 7 C 0.057 3.943 8 N -0.894 5.894 9 Si 0.896 3.104 10 H -0.277 1.277 11 H -0.289 1.289 12 H -0.278 1.278 13 N -0.664 5.664 14 C 0.067 3.933 15 H 0.117 0.883 16 C 0.098 3.902 17 N -0.598 5.598 18 C 0.667 3.333 19 O -0.567 6.567 20 O -0.363 6.363 21 C 0.135 3.865 22 C -0.184 4.184 23 C -0.139 4.139 24 C -0.183 4.183 25 C 0.078 3.922 26 C 0.086 3.914 27 H 0.110 0.890 28 F -0.197 7.197 29 H 0.043 0.957 30 H 0.038 0.962 31 H 0.035 0.965 32 H 0.101 0.899 33 H 0.042 0.958 34 H 0.261 0.739 35 H 0.328 0.672 36 H 0.075 0.925 37 H 0.071 0.929 38 H 0.059 0.941 39 H 0.069 0.931 40 H 0.088 0.912 41 H 0.066 0.934 42 H 0.079 0.921 43 H 0.066 0.934 44 H 0.088 0.912 45 H 0.069 0.931 46 H 0.059 0.941 47 H 0.088 0.912 48 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.495 14.730 8.499 19.478 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.164 4.164 3 C 0.111 3.889 4 H 0.024 0.976 5 C -0.538 4.538 6 H 0.080 0.920 7 C -0.144 4.144 8 N -0.533 5.533 9 Si 0.724 3.276 10 H -0.203 1.203 11 H -0.215 1.215 12 H -0.204 1.204 13 N -0.295 5.295 14 C -0.046 4.046 15 H 0.135 0.865 16 C -0.025 4.025 17 N -0.339 5.339 18 C 0.422 3.578 19 O -0.457 6.457 20 O -0.278 6.278 21 C 0.098 3.902 22 C -0.241 4.241 23 C -0.197 4.197 24 C -0.241 4.241 25 C -0.046 4.046 26 C 0.048 3.952 27 H 0.128 0.872 28 F -0.178 7.178 29 H 0.062 0.938 30 H 0.058 0.942 31 H 0.054 0.946 32 H 0.119 0.881 33 H 0.061 0.939 34 H 0.071 0.929 35 H 0.147 0.853 36 H 0.093 0.907 37 H 0.089 0.911 38 H 0.078 0.922 39 H 0.087 0.913 40 H 0.107 0.893 41 H 0.085 0.915 42 H 0.098 0.902 43 H 0.085 0.915 44 H 0.107 0.893 45 H 0.088 0.912 46 H 0.078 0.922 47 H 0.107 0.893 48 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -9.256 14.565 8.371 19.180 hybrid contribution 0.026 0.044 -0.660 0.662 sum -9.230 14.608 7.710 18.922 Atomic orbital electron populations 1.21901 0.99492 0.99954 0.99586 1.21769 0.91291 1.00102 1.03257 1.19265 0.95665 0.90246 0.83730 0.97622 1.21145 0.91031 1.37274 1.04378 0.91979 1.24952 0.98148 0.95469 0.95801 1.69857 1.34878 1.39030 1.09526 0.86597 0.85636 0.78156 0.77190 1.20274 1.21482 1.20398 1.60687 1.35988 0.99618 1.33218 1.23191 0.94029 0.92107 0.95266 0.86505 1.23042 0.98715 0.83925 0.96837 1.47074 1.12477 1.26062 1.48282 1.17470 0.81971 0.79361 0.78952 1.90899 1.39443 1.71018 1.44305 1.86294 1.40290 1.36137 1.65039 1.22050 0.80291 0.91206 0.96609 1.22518 0.97423 1.01741 1.02397 1.21849 1.02981 0.95125 0.99697 1.22516 1.02128 1.03641 0.95772 1.23023 0.87298 0.97486 0.96745 1.22802 0.97375 0.89045 0.85933 0.87239 1.92794 1.86576 1.79200 1.59235 0.93773 0.94238 0.94638 0.88094 0.93884 0.92904 0.85281 0.90688 0.91071 0.92186 0.91250 0.89321 0.91507 0.90231 0.91491 0.89310 0.91245 0.92203 0.89317 0.89390 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.90 9.64 37.16 0.36 -2.54 16 2 C -0.13 -2.86 5.37 -26.73 -0.14 -3.00 16 3 C 0.22 5.06 1.91 -68.87 -0.13 4.92 16 4 H 0.01 0.15 7.87 -51.93 -0.41 -0.25 16 5 C -0.50 -12.93 8.50 -34.44 -0.29 -13.22 16 6 H 0.06 1.62 7.81 -52.49 -0.41 1.21 16 7 C 0.06 1.52 5.29 -17.82 -0.09 1.42 16 8 N -0.89 -24.48 11.29 55.43 0.63 -23.86 16 9 Si 0.90 20.65 29.54 -169.99 -5.02 15.63 16 10 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 11 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 12 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 13 N -0.66 -13.12 5.78 -99.03 -0.57 -13.69 16 14 C 0.07 1.13 2.94 -65.87 -0.19 0.94 16 15 H 0.12 2.07 7.67 -51.93 -0.40 1.67 16 16 C 0.10 1.61 6.59 -3.06 -0.02 1.59 16 17 N -0.60 -9.03 3.33 -176.30 -0.59 -9.62 16 18 C 0.67 10.55 7.93 54.06 0.43 10.98 16 19 O -0.57 -10.09 12.21 -19.28 -0.24 -10.33 16 20 O -0.36 -4.93 9.42 -40.30 -0.38 -5.31 16 21 C 0.14 1.49 1.13 -90.62 -0.10 1.39 16 22 C -0.18 -2.00 8.37 37.15 0.31 -1.69 16 23 C -0.14 -1.09 8.85 37.16 0.33 -0.76 16 24 C -0.18 -1.97 8.37 37.16 0.31 -1.66 16 25 C 0.08 0.97 6.73 -2.53 -0.02 0.95 16 26 C 0.09 1.22 4.70 -24.58 -0.12 1.10 16 27 H 0.11 1.36 8.14 -51.93 -0.42 0.94 16 28 F -0.20 -3.25 16.82 2.25 0.04 -3.21 16 29 H 0.04 0.85 8.14 -51.93 -0.42 0.43 16 30 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.03 0.62 6.65 -51.93 -0.35 0.27 16 32 H 0.10 2.59 5.94 -51.93 -0.31 2.28 16 33 H 0.04 0.98 8.14 -51.93 -0.42 0.56 16 34 H 0.26 6.91 8.31 -40.82 -0.34 6.57 16 35 H 0.33 6.25 5.92 -39.29 -0.23 6.01 16 36 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 37 H 0.07 1.23 7.50 -51.93 -0.39 0.84 16 38 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 39 H 0.07 0.59 8.14 -51.92 -0.42 0.17 16 40 H 0.09 1.21 5.88 -51.93 -0.31 0.91 16 41 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 42 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 43 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 44 H 0.09 1.20 5.88 -51.93 -0.31 0.90 16 45 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 46 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 47 H 0.09 1.02 8.04 -51.93 -0.42 0.60 16 48 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 LS Contribution 379.34 15.07 5.72 5.72 Total: -1.00 -29.01 379.34 -7.94 -36.95 By element: Atomic # 1 Polarization: 15.46 SS G_CDS: -8.15 Total: 7.31 kcal Atomic # 6 Polarization: -0.22 SS G_CDS: 0.63 Total: 0.41 kcal Atomic # 7 Polarization: -46.63 SS G_CDS: -0.53 Total: -47.17 kcal Atomic # 8 Polarization: -15.02 SS G_CDS: -0.61 Total: -15.64 kcal Atomic # 9 Polarization: -3.25 SS G_CDS: 0.04 Total: -3.21 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -5.02 Total: 15.63 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -29.01 -7.94 -36.95 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255152009.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.659 kcal (2) G-P(sol) polarization free energy of solvation -29.011 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.671 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.939 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.950 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.609 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds