Wall clock time and date at job start Tue Mar 31 2020 10:50:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52999 * 109.47169 * 2 1 4 4 H 1.09003 * 109.46938 * 305.61975 * 3 2 1 5 5 C 1.50708 * 109.47119 * 185.62282 * 3 2 1 6 6 H 1.07992 * 119.99417 * 239.99867 * 5 3 2 7 7 C 1.37867 * 119.99960 * 59.99608 * 5 3 2 8 8 N 1.31512 * 120.00472 * 0.02562 * 7 5 3 9 9 Si 1.86801 * 119.99834 * 180.02562 * 7 5 3 10 10 H 1.48500 * 109.47068 * 59.99929 * 9 7 5 11 11 H 1.48502 * 109.47300 * 180.02562 * 9 7 5 12 12 H 1.48503 * 109.47147 * 299.99931 * 9 7 5 13 13 N 1.46892 * 109.47207 * 65.61989 * 3 2 1 14 14 C 1.46903 * 110.99703 * 204.11299 * 13 3 2 15 15 H 1.08991 * 110.64630 * 327.76118 * 14 13 3 16 16 C 1.54331 * 110.72065 * 91.10047 * 14 13 3 17 17 N 1.47018 * 107.27291 * 140.55440 * 16 14 13 18 18 C 1.34779 * 125.65101 * 181.02870 * 17 16 14 19 19 O 1.21512 * 119.99625 * 0.02562 * 18 17 16 20 20 O 1.34631 * 120.00227 * 180.02562 * 18 17 16 21 21 C 1.45199 * 116.99923 * 179.97438 * 20 18 17 22 22 C 1.52994 * 109.47335 * 59.99685 * 21 20 18 23 23 C 1.53007 * 109.47036 * 179.97438 * 21 20 18 24 24 C 1.53001 * 109.47093 * 299.99615 * 21 20 18 25 25 C 1.47424 * 108.70484 * 1.05603 * 17 16 14 26 26 C 1.54912 * 104.83175 * 335.87659 * 25 17 16 27 27 H 1.09005 * 111.00586 * 155.08037 * 26 25 17 28 28 F 1.39905 * 111.00261 * 278.92990 * 26 25 17 29 29 H 1.09000 * 109.46577 * 54.33402 * 1 2 3 30 30 H 1.08998 * 109.46646 * 174.32488 * 1 2 3 31 31 H 1.08999 * 109.46976 * 294.32731 * 1 2 3 32 32 H 1.09000 * 109.47522 * 239.99806 * 2 1 3 33 33 H 1.09005 * 109.46899 * 119.99724 * 2 1 3 34 34 H 0.96999 * 120.00136 * 180.02562 * 8 7 5 35 35 H 1.00894 * 111.00252 * 328.06572 * 13 3 2 36 36 H 1.08994 * 109.87866 * 259.97578 * 16 14 13 37 37 H 1.09003 * 109.88116 * 21.13924 * 16 14 13 38 38 H 1.09003 * 109.47480 * 60.00031 * 22 21 20 39 39 H 1.09007 * 109.47361 * 179.97438 * 22 21 20 40 40 H 1.08996 * 109.47139 * 300.00118 * 22 21 20 41 41 H 1.09003 * 109.47322 * 60.00052 * 23 21 20 42 42 H 1.09004 * 109.46661 * 179.97438 * 23 21 20 43 43 H 1.08997 * 109.47141 * 299.99841 * 23 21 20 44 44 H 1.08996 * 109.46975 * 60.00131 * 24 21 20 45 45 H 1.08996 * 109.47118 * 180.02562 * 24 21 20 46 46 H 1.09003 * 109.47228 * 299.99925 * 24 21 20 47 47 H 1.08995 * 110.37300 * 217.03353 * 25 17 16 48 48 H 1.09006 * 110.36768 * 94.70958 * 25 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5968 1.9845 -0.8354 5 6 3.5407 1.4448 -0.1392 6 1 4.1538 1.8865 0.6323 7 6 4.1306 0.8828 -1.2514 8 7 3.3840 0.3452 -2.1911 9 14 5.9907 0.8850 -1.4236 10 1 6.5940 0.1462 -0.2855 11 1 6.3706 0.2263 -2.6991 12 1 6.4862 2.2849 -1.4233 13 7 1.6643 2.0947 1.2614 14 6 1.6043 3.5538 1.1021 15 1 2.3366 3.8907 0.3685 16 6 0.1818 4.0017 0.7047 17 7 -0.1037 5.2460 1.4339 18 6 -1.2545 5.9450 1.3744 19 8 -2.1664 5.5552 0.6722 20 8 -1.3937 7.0750 2.0928 21 6 -2.6600 7.7764 1.9795 22 6 -3.7948 6.8571 2.4352 23 6 -2.6314 9.0263 2.8615 24 6 -2.8882 8.1848 0.5228 25 6 1.0775 5.6029 2.2407 26 6 1.8246 4.2643 2.4637 27 1 2.8853 4.4348 2.6483 28 9 1.2466 3.5356 3.5088 29 1 -0.3632 0.5992 -0.8349 30 1 -0.3632 -1.0226 -0.1016 31 1 -0.3633 0.4233 0.9364 32 1 1.8934 -0.5138 -0.8899 33 1 1.8933 -0.5138 0.8901 34 1 3.7991 -0.0504 -2.9734 35 1 0.7890 1.7327 1.6090 36 1 0.1367 4.1826 -0.3691 37 1 -0.5400 3.2343 0.9842 38 1 -3.6323 6.5661 3.4730 39 1 -4.7454 7.3838 2.3505 40 1 -3.8153 5.9664 1.8072 41 1 -1.8229 9.6815 2.5373 42 1 -3.5819 9.5531 2.7761 43 1 -2.4691 8.7351 3.8993 44 1 -2.9087 7.2941 -0.1053 45 1 -3.8385 8.7117 0.4377 46 1 -2.0797 8.8398 0.1981 47 1 0.7701 6.0295 3.1954 48 1 1.7104 6.3044 1.6970 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255152009.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:50:47 Heat of formation + Delta-G solvation = -145.880989 kcal Electronic energy + Delta-G solvation = -28284.990615 eV Core-core repulsion = 24288.694458 eV Total energy + Delta-G solvation = -3996.296157 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.195 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -48.47870 -41.88686 -39.75917 -38.05211 -37.13723 -35.13432 -34.27828 -33.01252 -30.82792 -29.50688 -28.37641 -28.28730 -27.88968 -25.26530 -24.34540 -22.71869 -21.71193 -21.53103 -20.49841 -19.13139 -18.26647 -18.06406 -17.65224 -17.10985 -16.81434 -16.65962 -16.18394 -15.79815 -15.67485 -15.35877 -15.32634 -14.81789 -14.64643 -14.51123 -13.97386 -13.89252 -13.61450 -13.57779 -13.33998 -13.13274 -13.07508 -12.90369 -12.87492 -12.78048 -12.72164 -12.53347 -12.49289 -12.36266 -12.19549 -11.99366 -11.93667 -11.53105 -11.41781 -11.27036 -11.14587 -11.04974 -10.40793 -9.94131 -9.10650 -8.03932 -6.16066 0.93957 1.46694 1.48272 1.55185 1.65615 2.46919 2.75924 3.17935 3.22367 3.29404 3.55264 3.70243 3.74942 3.79253 3.94248 4.07453 4.20335 4.39228 4.40655 4.48617 4.51032 4.54520 4.59318 4.60795 4.67070 4.70382 4.75818 4.76508 4.83197 4.88096 4.95005 5.09433 5.12705 5.17472 5.21261 5.27579 5.33205 5.34319 5.41111 5.58331 5.76407 5.87681 6.28656 6.33470 6.43190 6.84596 6.96888 7.16292 7.53073 8.99363 Molecular weight = 316.19amu Principal moments of inertia in cm(-1) A = 0.020011 B = 0.003207 C = 0.003123 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1398.887664 B = 8728.683528 C = 8962.977614 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.122 4.122 3 C 0.226 3.774 4 H -0.022 1.022 5 C -0.511 4.511 6 H 0.059 0.941 7 C 0.011 3.989 8 N -0.920 5.920 9 Si 0.955 3.045 10 H -0.275 1.275 11 H -0.290 1.290 12 H -0.270 1.270 13 N -0.664 5.664 14 C 0.066 3.934 15 H 0.107 0.893 16 C 0.109 3.891 17 N -0.602 5.602 18 C 0.664 3.336 19 O -0.594 6.594 20 O -0.360 6.360 21 C 0.122 3.878 22 C -0.180 4.180 23 C -0.133 4.133 24 C -0.180 4.180 25 C 0.084 3.916 26 C 0.091 3.909 27 H 0.134 0.866 28 F -0.209 7.209 29 H 0.036 0.964 30 H 0.056 0.944 31 H 0.052 0.948 32 H 0.070 0.930 33 H 0.037 0.963 34 H 0.259 0.741 35 H 0.331 0.669 36 H 0.060 0.940 37 H 0.058 0.942 38 H 0.061 0.939 39 H 0.094 0.906 40 H 0.055 0.945 41 H 0.071 0.929 42 H 0.104 0.896 43 H 0.070 0.930 44 H 0.055 0.945 45 H 0.094 0.906 46 H 0.063 0.937 47 H 0.105 0.895 48 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.395 16.772 10.126 21.728 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.161 4.161 3 C 0.118 3.882 4 H -0.005 1.005 5 C -0.550 4.550 6 H 0.077 0.923 7 C -0.187 4.187 8 N -0.560 5.560 9 Si 0.782 3.218 10 H -0.200 1.200 11 H -0.216 1.216 12 H -0.195 1.195 13 N -0.295 5.295 14 C -0.047 4.047 15 H 0.125 0.875 16 C -0.016 4.016 17 N -0.343 5.343 18 C 0.419 3.581 19 O -0.485 6.485 20 O -0.275 6.275 21 C 0.086 3.914 22 C -0.238 4.238 23 C -0.189 4.189 24 C -0.237 4.237 25 C -0.038 4.038 26 C 0.054 3.946 27 H 0.152 0.848 28 F -0.190 7.190 29 H 0.055 0.945 30 H 0.075 0.925 31 H 0.071 0.929 32 H 0.088 0.912 33 H 0.056 0.944 34 H 0.068 0.932 35 H 0.151 0.849 36 H 0.079 0.921 37 H 0.076 0.924 38 H 0.080 0.920 39 H 0.113 0.887 40 H 0.074 0.926 41 H 0.090 0.910 42 H 0.123 0.877 43 H 0.089 0.911 44 H 0.074 0.926 45 H 0.112 0.888 46 H 0.082 0.918 47 H 0.123 0.877 48 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -9.154 16.640 10.031 21.478 hybrid contribution -0.074 -0.551 -1.156 1.283 sum -9.228 16.089 8.874 20.561 Atomic orbital electron populations 1.21767 0.96763 1.01110 1.00182 1.21612 0.93748 0.99321 1.01377 1.19001 0.94384 0.90515 0.84260 1.00486 1.21436 0.92413 1.36899 1.04214 0.92326 1.25666 1.02108 0.95316 0.95646 1.69998 1.36348 1.39787 1.09886 0.85655 0.80894 0.78411 0.76885 1.20025 1.21611 1.19459 1.60601 1.36342 1.01321 1.31250 1.23173 0.93901 0.90484 0.97157 0.87504 1.22725 0.98129 0.84512 0.96190 1.47104 1.13261 1.25568 1.48371 1.17617 0.81693 0.79864 0.78877 1.90895 1.40412 1.71796 1.45402 1.86310 1.41837 1.35077 1.64267 1.22499 0.79271 0.92139 0.97507 1.22479 0.98851 1.00775 1.01648 1.21874 1.04631 0.93447 0.98993 1.22474 1.03697 1.02405 0.95128 1.23193 0.86345 0.96786 0.97526 1.22921 0.98991 0.88999 0.83709 0.84826 1.92774 1.86923 1.79720 1.59615 0.94522 0.92506 0.92920 0.91157 0.94400 0.93156 0.84899 0.92118 0.92359 0.91974 0.88718 0.92586 0.90981 0.87736 0.91110 0.92579 0.88759 0.91802 0.87686 0.86737 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.38 9.64 71.98 0.69 -4.69 16 2 C -0.12 -5.65 5.37 30.59 0.16 -5.49 16 3 C 0.23 10.75 1.91 44.17 0.08 10.83 16 4 H -0.02 -1.18 7.87 -2.39 -0.02 -1.20 16 5 C -0.51 -26.75 8.50 25.60 0.22 -26.53 16 6 H 0.06 3.05 7.81 -2.91 -0.02 3.02 16 7 C 0.01 0.59 5.29 84.65 0.45 1.04 16 8 N -0.92 -51.58 11.29 21.44 0.24 -51.34 16 9 Si 0.96 42.47 29.54 68.60 2.03 44.50 16 10 H -0.27 -12.04 7.11 99.48 0.71 -11.34 16 11 H -0.29 -12.88 7.11 99.48 0.71 -12.17 16 12 H -0.27 -11.52 7.11 99.48 0.71 -10.81 16 13 N -0.66 -26.35 5.78 -467.23 -2.70 -29.06 16 14 C 0.07 2.19 2.94 46.11 0.14 2.33 16 15 H 0.11 3.81 7.67 -2.39 -0.02 3.79 16 16 C 0.11 3.61 6.59 86.73 0.57 4.18 16 17 N -0.60 -17.81 3.33 -942.10 -3.13 -20.94 16 18 C 0.66 20.81 7.93 129.79 1.03 21.84 16 19 O -0.59 -21.67 12.21 19.80 0.24 -21.43 16 20 O -0.36 -9.30 9.42 -55.40 -0.52 -9.82 16 21 C 0.12 2.47 1.13 -10.79 -0.01 2.46 16 22 C -0.18 -3.71 8.37 71.98 0.60 -3.11 16 23 C -0.13 -1.66 8.85 71.98 0.64 -1.02 16 24 C -0.18 -3.64 8.37 71.98 0.60 -3.04 16 25 C 0.08 1.88 6.73 86.86 0.58 2.47 16 26 C 0.09 2.42 4.70 31.99 0.15 2.57 16 27 H 0.13 2.95 8.14 -2.38 -0.02 2.93 16 28 F -0.21 -6.56 16.82 44.97 0.76 -5.80 16 29 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 30 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 31 H 0.05 1.81 6.65 -2.39 -0.02 1.80 16 32 H 0.07 3.72 5.94 -2.39 -0.01 3.70 16 33 H 0.04 1.75 8.14 -2.38 -0.02 1.73 16 34 H 0.26 14.02 8.31 -92.71 -0.77 13.25 16 35 H 0.33 12.63 5.92 -89.70 -0.53 12.10 16 36 H 0.06 2.17 8.14 -2.39 -0.02 2.15 16 37 H 0.06 2.08 7.50 -2.39 -0.02 2.06 16 38 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 39 H 0.09 1.41 8.14 -2.38 -0.02 1.39 16 40 H 0.06 1.55 5.88 -2.39 -0.01 1.53 16 41 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 42 H 0.10 0.81 8.14 -2.38 -0.02 0.79 16 43 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 44 H 0.06 1.53 5.88 -2.39 -0.01 1.52 16 45 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 46 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 47 H 0.10 2.09 8.04 -2.39 -0.02 2.07 16 48 H 0.11 2.02 8.14 -2.38 -0.02 2.00 16 Total: -1.00 -64.19 379.34 3.23 -60.96 By element: Atomic # 1 Polarization: 28.67 SS G_CDS: 0.41 Total: 29.08 kcal Atomic # 6 Polarization: -2.07 SS G_CDS: 5.91 Total: 3.84 kcal Atomic # 7 Polarization: -95.74 SS G_CDS: -5.59 Total: -101.33 kcal Atomic # 8 Polarization: -30.97 SS G_CDS: -0.28 Total: -31.25 kcal Atomic # 9 Polarization: -6.56 SS G_CDS: 0.76 Total: -5.80 kcal Atomic # 14 Polarization: 42.47 SS G_CDS: 2.03 Total: 44.50 kcal Total: -64.19 3.23 -60.96 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255152009.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.924 kcal (2) G-P(sol) polarization free energy of solvation -64.187 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.111 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.230 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.957 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.881 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds