Wall clock time and date at job start Tue Mar 31 2020 10:50:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53002 * 109.47354 * 2 1 4 4 H 1.08994 * 109.47214 * 304.15804 * 3 2 1 5 5 C 1.50698 * 109.47327 * 184.15431 * 3 2 1 6 6 H 1.08002 * 120.00343 * 245.41704 * 5 3 2 7 7 C 1.37880 * 119.99797 * 65.40850 * 5 3 2 8 8 N 1.31512 * 120.00074 * 193.89222 * 7 5 3 9 9 Si 1.86799 * 119.99809 * 13.89904 * 7 5 3 10 10 H 1.48506 * 109.46940 * 84.18996 * 9 7 5 11 11 H 1.48501 * 109.46868 * 204.18655 * 9 7 5 12 12 H 1.48500 * 109.47331 * 324.18866 * 9 7 5 13 13 N 1.46904 * 109.46598 * 64.15551 * 3 2 1 14 14 C 1.46894 * 111.00258 * 262.09295 * 13 3 2 15 15 C 1.52998 * 109.47221 * 175.10970 * 14 13 3 16 16 F 1.39900 * 113.28412 * 318.06731 * 15 14 13 17 17 C 1.53500 * 114.20869 * 184.99850 * 15 14 13 18 18 N 1.47062 * 87.98729 * 220.34592 * 17 15 14 19 19 C 1.34779 * 136.05853 * 206.85930 * 18 17 15 20 20 O 1.21508 * 119.99558 * 0.02562 * 19 18 17 21 21 O 1.34635 * 120.00200 * 179.97438 * 19 18 17 22 22 C 1.45198 * 116.99775 * 179.97438 * 21 19 18 23 23 C 1.53001 * 109.47208 * 60.00418 * 22 21 19 24 24 C 1.53006 * 109.46831 * 180.02562 * 22 21 19 25 25 C 1.52994 * 109.47482 * 300.00031 * 22 21 19 26 26 C 1.47072 * 87.88447 * 27.12114 * 18 17 15 27 27 H 1.09002 * 109.46722 * 297.37882 * 1 2 3 28 28 H 1.09003 * 109.47229 * 57.37246 * 1 2 3 29 29 H 1.08996 * 109.47474 * 177.37911 * 1 2 3 30 30 H 1.09002 * 109.47016 * 240.00579 * 2 1 3 31 31 H 1.08996 * 109.47269 * 120.00753 * 2 1 3 32 32 H 0.96993 * 120.00095 * 180.02562 * 8 7 5 33 33 H 1.00901 * 110.99760 * 138.13516 * 13 3 2 34 34 H 1.09002 * 109.47035 * 55.10992 * 14 13 3 35 35 H 1.09004 * 109.47282 * 295.11209 * 14 13 3 36 36 H 1.09002 * 113.46455 * 105.56075 * 17 15 14 37 37 H 1.09000 * 113.51644 * 335.13783 * 17 15 14 38 38 H 1.08998 * 109.47140 * 59.99410 * 23 22 21 39 39 H 1.08998 * 109.47213 * 179.97438 * 23 22 21 40 40 H 1.09000 * 109.46982 * 300.00037 * 23 22 21 41 41 H 1.08999 * 109.46943 * 60.00508 * 24 22 21 42 42 H 1.08998 * 109.47001 * 180.02562 * 24 22 21 43 43 H 1.08998 * 109.47071 * 300.00317 * 24 22 21 44 44 H 1.09001 * 109.47191 * 59.99963 * 25 22 21 45 45 H 1.08998 * 109.47307 * 180.02562 * 25 22 21 46 46 H 1.08999 * 109.47468 * 300.00211 * 25 22 21 47 47 H 1.08992 * 113.46657 * 87.65771 * 26 18 17 48 48 H 1.09000 * 113.46521 * 218.09885 * 26 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6172 1.9774 -0.8503 5 6 3.5435 1.4437 -0.1029 6 1 4.1407 1.8126 0.7179 7 6 4.1567 0.9737 -1.2450 8 7 5.4465 0.7169 -1.2406 9 14 3.1554 0.7020 -2.7983 10 1 3.0356 1.9828 -3.5403 11 1 3.8332 -0.3044 -3.6544 12 1 1.8015 0.2118 -2.4352 13 7 1.6340 2.1053 1.2465 14 6 0.4211 2.9090 1.0446 15 6 -0.0393 3.4835 2.3858 16 9 0.0460 2.5663 3.4388 17 6 -1.3705 4.2450 2.3207 18 7 -0.7882 5.2371 3.2369 19 6 -1.2591 6.1044 4.1548 20 8 -2.4533 6.1746 4.3677 21 8 -0.4063 6.8922 4.8364 22 6 -0.9840 7.8026 5.8089 23 6 -1.7413 7.0018 6.8701 24 6 0.1310 8.6093 6.4775 25 6 -1.9503 8.7563 5.1037 26 6 0.5336 4.8711 2.7060 27 1 -0.3633 0.4726 0.9126 28 1 -0.3634 0.5541 -0.8655 29 1 -0.3634 -1.0265 -0.0470 30 1 1.8933 -0.5138 -0.8901 31 1 1.8934 -0.5139 0.8899 32 1 5.8779 0.3866 -2.0441 33 1 2.3841 2.6695 1.6170 34 1 -0.3664 2.2801 0.6291 35 1 0.6365 3.7248 0.3545 36 1 -2.2069 3.6945 2.7515 37 1 -1.5944 4.6458 1.3321 38 1 -1.0529 6.3223 7.3725 39 1 -2.1746 7.6851 7.6004 40 1 -2.5357 6.4273 6.3935 41 1 0.6702 9.1799 5.7212 42 1 -0.3026 9.2924 7.2078 43 1 0.8198 7.9301 6.9798 44 1 -2.7446 8.1819 4.6271 45 1 -2.3836 9.4400 5.8337 46 1 -1.4108 9.3268 4.3477 47 1 0.8177 5.4384 1.8198 48 1 1.3162 4.8531 3.4645 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255152557.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:50:35 Heat of formation + Delta-G solvation = -83.875550 kcal Electronic energy + Delta-G solvation = -27656.829303 eV Core-core repulsion = 23663.221903 eV Total energy + Delta-G solvation = -3993.607400 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.195 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -47.49111 -40.93051 -39.22383 -36.88325 -36.38289 -34.25066 -32.69264 -31.62774 -29.77800 -27.68238 -27.62713 -27.60381 -26.48703 -24.72824 -22.54824 -21.93743 -20.46260 -19.68374 -19.44306 -18.03643 -17.20701 -16.93399 -16.47775 -16.01417 -15.53620 -15.47241 -15.13331 -14.73766 -14.51839 -14.11328 -13.98434 -13.66964 -13.50089 -13.40611 -12.94743 -12.81740 -12.74557 -12.43054 -12.30424 -12.26286 -12.14516 -12.10057 -11.84495 -11.70347 -11.67584 -11.59684 -11.26790 -10.85035 -10.68774 -10.58567 -10.45500 -10.33651 -10.05923 -9.88793 -9.36782 -9.15239 -9.06165 -8.52511 -7.59670 -6.18455 -4.15721 1.73591 2.67537 3.22457 3.32351 3.33886 3.48435 3.78818 4.10187 4.34353 4.45793 4.49951 4.61986 4.64128 4.83712 4.89555 5.11734 5.14110 5.20561 5.25609 5.27514 5.27805 5.36284 5.42617 5.49615 5.59865 5.60347 5.69634 5.73894 5.81708 6.02137 6.02713 6.03859 6.06956 6.09307 6.22575 6.29026 6.57579 6.72329 6.95550 6.99685 7.38205 7.43576 7.57994 7.83403 8.14125 8.22119 8.51255 8.88930 9.46105 10.94342 Molecular weight = 316.19amu Principal moments of inertia in cm(-1) A = 0.024483 B = 0.002733 C = 0.002617 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1143.367180 B =10242.235335 C =10697.182106 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.114 4.114 3 C 0.194 3.806 4 H 0.003 0.997 5 C -0.534 4.534 6 H 0.077 0.923 7 C 0.078 3.922 8 N -0.890 5.890 9 Si 0.862 3.138 10 H -0.280 1.280 11 H -0.289 1.289 12 H -0.248 1.248 13 N -0.672 5.672 14 C 0.047 3.953 15 C 0.095 3.905 16 F -0.165 7.165 17 C 0.110 3.890 18 N -0.634 5.634 19 C 0.686 3.314 20 O -0.568 6.568 21 O -0.359 6.359 22 C 0.135 3.865 23 C -0.184 4.184 24 C -0.141 4.141 25 C -0.183 4.183 26 C 0.083 3.917 27 H 0.057 0.943 28 H 0.036 0.964 29 H 0.036 0.964 30 H 0.055 0.945 31 H 0.060 0.940 32 H 0.265 0.735 33 H 0.342 0.658 34 H 0.090 0.910 35 H 0.048 0.952 36 H 0.094 0.906 37 H 0.107 0.893 38 H 0.061 0.939 39 H 0.070 0.930 40 H 0.087 0.913 41 H 0.067 0.933 42 H 0.080 0.920 43 H 0.068 0.932 44 H 0.087 0.913 45 H 0.070 0.930 46 H 0.059 0.941 47 H 0.106 0.894 48 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.775 13.497 10.187 21.810 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.152 4.152 3 C 0.086 3.914 4 H 0.021 0.979 5 C -0.571 4.571 6 H 0.095 0.905 7 C -0.125 4.125 8 N -0.527 5.527 9 Si 0.689 3.311 10 H -0.206 1.206 11 H -0.215 1.215 12 H -0.172 1.172 13 N -0.304 5.304 14 C -0.084 4.084 15 C 0.075 3.925 16 F -0.145 7.145 17 C -0.012 4.012 18 N -0.375 5.375 19 C 0.442 3.558 20 O -0.457 6.457 21 O -0.274 6.274 22 C 0.098 3.902 23 C -0.241 4.241 24 C -0.198 4.198 25 C -0.240 4.240 26 C -0.041 4.041 27 H 0.076 0.924 28 H 0.056 0.944 29 H 0.055 0.945 30 H 0.073 0.927 31 H 0.079 0.921 32 H 0.075 0.925 33 H 0.161 0.839 34 H 0.108 0.892 35 H 0.066 0.934 36 H 0.112 0.888 37 H 0.125 0.875 38 H 0.080 0.920 39 H 0.089 0.911 40 H 0.106 0.894 41 H 0.086 0.914 42 H 0.099 0.901 43 H 0.087 0.913 44 H 0.105 0.895 45 H 0.089 0.911 46 H 0.078 0.922 47 H 0.124 0.876 48 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -14.397 13.105 10.656 22.193 hybrid contribution -0.004 0.636 -1.300 1.447 sum -14.401 13.741 9.356 21.994 Atomic orbital electron populations 1.21926 0.98715 0.99745 1.00478 1.21935 0.92700 0.99315 1.01287 1.19435 0.95529 0.90796 0.85658 0.97927 1.21170 0.89080 1.43775 1.03125 0.90489 1.24900 0.94731 0.94080 0.98797 1.69958 1.10365 1.43563 1.28770 0.87274 0.82006 0.78234 0.83578 1.20606 1.21457 1.17182 1.60456 1.05725 1.32807 1.31371 1.22436 0.97099 0.97428 0.91447 1.22000 0.96284 0.86863 0.87360 1.92910 1.96513 1.67300 1.57740 1.23678 0.97933 0.86015 0.93595 1.48002 1.11801 1.39588 1.38152 1.17162 0.82949 0.77357 0.78287 1.90894 1.14764 1.70884 1.69190 1.86331 1.39820 1.49722 1.51481 1.22104 0.93964 0.87625 0.86484 1.22523 1.01945 1.01166 0.98468 1.21860 0.97753 0.99570 1.00587 1.22515 1.00580 0.99520 1.01409 1.23849 0.87341 0.92659 1.00216 0.92405 0.94444 0.94525 0.92698 0.92082 0.92542 0.83927 0.89202 0.93427 0.88783 0.87532 0.92024 0.91128 0.89419 0.91419 0.90106 0.91329 0.89471 0.91093 0.92164 0.87572 0.88639 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.60 8.65 37.16 0.32 -2.28 16 2 C -0.11 -2.39 4.97 -26.73 -0.13 -2.52 16 3 C 0.19 4.19 1.80 -68.86 -0.12 4.07 16 4 H 0.00 0.07 6.42 -51.93 -0.33 -0.27 16 5 C -0.53 -13.96 9.00 -34.44 -0.31 -14.27 16 6 H 0.08 2.19 7.73 -52.49 -0.41 1.78 16 7 C 0.08 2.14 5.36 -17.82 -0.10 2.04 16 8 N -0.89 -26.10 13.96 55.43 0.77 -25.32 16 9 Si 0.86 20.09 25.87 -169.99 -4.40 15.69 16 10 H -0.28 -6.48 7.11 56.52 0.40 -6.07 16 11 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 12 H -0.25 -5.39 5.35 56.52 0.30 -5.08 16 13 N -0.67 -12.27 5.82 -107.95 -0.63 -12.90 16 14 C 0.05 0.66 4.83 -3.83 -0.02 0.64 16 15 C 0.10 1.21 2.10 -90.10 -0.19 1.02 16 16 F -0.16 -2.62 17.03 2.25 0.04 -2.58 16 17 C 0.11 1.22 8.10 -8.51 -0.07 1.15 16 18 N -0.63 -8.19 3.69 -191.07 -0.70 -8.90 16 19 C 0.69 9.82 8.26 54.06 0.45 10.27 16 20 O -0.57 -8.96 12.66 -19.28 -0.24 -9.21 16 21 O -0.36 -4.69 9.91 -40.31 -0.40 -5.09 16 22 C 0.13 1.39 1.13 -90.62 -0.10 1.29 16 23 C -0.18 -1.85 8.37 37.16 0.31 -1.54 16 24 C -0.14 -1.07 8.85 37.16 0.33 -0.74 16 25 C -0.18 -1.76 8.37 37.15 0.31 -1.45 16 26 C 0.08 0.95 8.13 -8.50 -0.07 0.88 16 27 H 0.06 0.95 6.30 -51.93 -0.33 0.62 16 28 H 0.04 0.61 8.11 -51.93 -0.42 0.19 16 29 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.05 1.22 4.72 -51.93 -0.25 0.97 16 31 H 0.06 1.34 8.14 -51.93 -0.42 0.91 16 32 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 33 H 0.34 6.32 8.03 -39.29 -0.32 6.00 16 34 H 0.09 1.23 5.55 -51.93 -0.29 0.94 16 35 H 0.05 0.61 7.81 -51.93 -0.41 0.20 16 36 H 0.09 1.05 8.14 -51.93 -0.42 0.62 16 37 H 0.11 0.91 8.10 -51.93 -0.42 0.49 16 38 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 39 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 40 H 0.09 1.09 5.88 -51.93 -0.31 0.79 16 41 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 42 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 43 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 44 H 0.09 1.04 5.88 -51.93 -0.31 0.73 16 45 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 46 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 47 H 0.11 1.02 7.87 -51.93 -0.41 0.61 16 48 H 0.10 1.12 8.14 -51.93 -0.42 0.70 16 LS Contribution 376.73 15.07 5.68 5.68 Total: -1.00 -31.13 376.73 -7.34 -38.47 By element: Atomic # 1 Polarization: 13.67 SS G_CDS: -8.07 Total: 5.61 kcal Atomic # 6 Polarization: -2.06 SS G_CDS: 0.61 Total: -1.45 kcal Atomic # 7 Polarization: -46.56 SS G_CDS: -0.56 Total: -47.12 kcal Atomic # 8 Polarization: -13.65 SS G_CDS: -0.64 Total: -14.30 kcal Atomic # 9 Polarization: -2.62 SS G_CDS: 0.04 Total: -2.58 kcal Atomic # 14 Polarization: 20.09 SS G_CDS: -4.40 Total: 15.69 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -31.13 -7.34 -38.47 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255152557.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.403 kcal (2) G-P(sol) polarization free energy of solvation -31.129 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.531 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.344 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.473 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.876 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds