Wall clock time and date at job start Tue Mar 31 2020 10:50:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53002 * 109.47354 * 2 1 4 4 H 1.08994 * 109.47214 * 304.15804 * 3 2 1 5 5 C 1.50698 * 109.47327 * 184.15431 * 3 2 1 6 6 H 1.08002 * 120.00343 * 245.41704 * 5 3 2 7 7 C 1.37880 * 119.99797 * 65.40850 * 5 3 2 8 8 N 1.31512 * 120.00074 * 193.89222 * 7 5 3 9 9 Si 1.86799 * 119.99809 * 13.89904 * 7 5 3 10 10 H 1.48506 * 109.46940 * 84.18996 * 9 7 5 11 11 H 1.48501 * 109.46868 * 204.18655 * 9 7 5 12 12 H 1.48500 * 109.47331 * 324.18866 * 9 7 5 13 13 N 1.46904 * 109.46598 * 64.15551 * 3 2 1 14 14 C 1.46894 * 111.00258 * 262.09295 * 13 3 2 15 15 C 1.52998 * 109.47221 * 175.10970 * 14 13 3 16 16 F 1.39900 * 113.28412 * 318.06731 * 15 14 13 17 17 C 1.53500 * 114.20869 * 184.99850 * 15 14 13 18 18 N 1.47062 * 87.98729 * 220.34592 * 17 15 14 19 19 C 1.34779 * 136.05853 * 206.85930 * 18 17 15 20 20 O 1.21508 * 119.99558 * 0.02562 * 19 18 17 21 21 O 1.34635 * 120.00200 * 179.97438 * 19 18 17 22 22 C 1.45198 * 116.99775 * 179.97438 * 21 19 18 23 23 C 1.53001 * 109.47208 * 60.00418 * 22 21 19 24 24 C 1.53006 * 109.46831 * 180.02562 * 22 21 19 25 25 C 1.52994 * 109.47482 * 300.00031 * 22 21 19 26 26 C 1.47072 * 87.88447 * 27.12114 * 18 17 15 27 27 H 1.09002 * 109.46722 * 297.37882 * 1 2 3 28 28 H 1.09003 * 109.47229 * 57.37246 * 1 2 3 29 29 H 1.08996 * 109.47474 * 177.37911 * 1 2 3 30 30 H 1.09002 * 109.47016 * 240.00579 * 2 1 3 31 31 H 1.08996 * 109.47269 * 120.00753 * 2 1 3 32 32 H 0.96993 * 120.00095 * 180.02562 * 8 7 5 33 33 H 1.00901 * 110.99760 * 138.13516 * 13 3 2 34 34 H 1.09002 * 109.47035 * 55.10992 * 14 13 3 35 35 H 1.09004 * 109.47282 * 295.11209 * 14 13 3 36 36 H 1.09002 * 113.46455 * 105.56075 * 17 15 14 37 37 H 1.09000 * 113.51644 * 335.13783 * 17 15 14 38 38 H 1.08998 * 109.47140 * 59.99410 * 23 22 21 39 39 H 1.08998 * 109.47213 * 179.97438 * 23 22 21 40 40 H 1.09000 * 109.46982 * 300.00037 * 23 22 21 41 41 H 1.08999 * 109.46943 * 60.00508 * 24 22 21 42 42 H 1.08998 * 109.47001 * 180.02562 * 24 22 21 43 43 H 1.08998 * 109.47071 * 300.00317 * 24 22 21 44 44 H 1.09001 * 109.47191 * 59.99963 * 25 22 21 45 45 H 1.08998 * 109.47307 * 180.02562 * 25 22 21 46 46 H 1.08999 * 109.47468 * 300.00211 * 25 22 21 47 47 H 1.08992 * 113.46657 * 87.65771 * 26 18 17 48 48 H 1.09000 * 113.46521 * 218.09885 * 26 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6172 1.9774 -0.8503 5 6 3.5435 1.4437 -0.1029 6 1 4.1407 1.8126 0.7179 7 6 4.1567 0.9737 -1.2450 8 7 5.4465 0.7169 -1.2406 9 14 3.1554 0.7020 -2.7983 10 1 3.0356 1.9828 -3.5403 11 1 3.8332 -0.3044 -3.6544 12 1 1.8015 0.2118 -2.4352 13 7 1.6340 2.1053 1.2465 14 6 0.4211 2.9090 1.0446 15 6 -0.0393 3.4835 2.3858 16 9 0.0460 2.5663 3.4388 17 6 -1.3705 4.2450 2.3207 18 7 -0.7882 5.2371 3.2369 19 6 -1.2591 6.1044 4.1548 20 8 -2.4533 6.1746 4.3677 21 8 -0.4063 6.8922 4.8364 22 6 -0.9840 7.8026 5.8089 23 6 -1.7413 7.0018 6.8701 24 6 0.1310 8.6093 6.4775 25 6 -1.9503 8.7563 5.1037 26 6 0.5336 4.8711 2.7060 27 1 -0.3633 0.4726 0.9126 28 1 -0.3634 0.5541 -0.8655 29 1 -0.3634 -1.0265 -0.0470 30 1 1.8933 -0.5138 -0.8901 31 1 1.8934 -0.5139 0.8899 32 1 5.8779 0.3866 -2.0441 33 1 2.3841 2.6695 1.6170 34 1 -0.3664 2.2801 0.6291 35 1 0.6365 3.7248 0.3545 36 1 -2.2069 3.6945 2.7515 37 1 -1.5944 4.6458 1.3321 38 1 -1.0529 6.3223 7.3725 39 1 -2.1746 7.6851 7.6004 40 1 -2.5357 6.4273 6.3935 41 1 0.6702 9.1799 5.7212 42 1 -0.3026 9.2924 7.2078 43 1 0.8198 7.9301 6.9798 44 1 -2.7446 8.1819 4.6271 45 1 -2.3836 9.4400 5.8337 46 1 -1.4108 9.3268 4.3477 47 1 0.8177 5.4384 1.8198 48 1 1.3162 4.8531 3.4645 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255152557.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:50:34 Heat of formation + Delta-G solvation = -105.024297 kcal Electronic energy + Delta-G solvation = -27657.746382 eV Core-core repulsion = 23663.221903 eV Total energy + Delta-G solvation = -3994.524478 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.195 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -48.62756 -41.90185 -40.18587 -38.23115 -37.58357 -35.11617 -34.50417 -33.17591 -31.00734 -29.17810 -28.39241 -28.32853 -27.38375 -26.13565 -24.14793 -22.93482 -21.59011 -21.21174 -20.39631 -19.19786 -18.81234 -17.88147 -17.59085 -17.28562 -16.79821 -16.60393 -16.26336 -15.86589 -15.63227 -15.39851 -15.03058 -14.87811 -14.74139 -14.61756 -14.34537 -14.19492 -13.77315 -13.45009 -13.37704 -13.17663 -13.13877 -13.09545 -12.92038 -12.89940 -12.78491 -12.60871 -12.52613 -12.46411 -12.21762 -11.85158 -11.58614 -11.44385 -11.37889 -11.18984 -11.06180 -10.93662 -10.54713 -10.03842 -9.04653 -8.27743 -6.28780 0.82821 1.39590 1.42818 1.51763 1.63271 2.39160 2.57824 2.81988 3.07559 3.12395 3.46647 3.71454 3.76223 3.77896 3.91418 4.03854 4.09869 4.35815 4.39559 4.47168 4.52309 4.57173 4.58349 4.59398 4.64498 4.69120 4.73725 4.76921 4.79113 4.84176 4.84796 4.94999 5.07273 5.09548 5.25138 5.28510 5.29375 5.32816 5.40785 5.46690 5.60834 5.86937 6.03698 6.43287 6.52419 6.70802 6.89988 7.12152 7.37617 8.88652 Molecular weight = 316.19amu Principal moments of inertia in cm(-1) A = 0.024483 B = 0.002733 C = 0.002617 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1143.367180 B =10242.235335 C =10697.182106 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.116 4.116 3 C 0.201 3.799 4 H 0.014 0.986 5 C -0.534 4.534 6 H 0.037 0.963 7 C 0.019 3.981 8 N -0.944 5.944 9 Si 0.925 3.075 10 H -0.272 1.272 11 H -0.296 1.296 12 H -0.218 1.218 13 N -0.682 5.682 14 C 0.049 3.951 15 C 0.092 3.908 16 F -0.187 7.187 17 C 0.116 3.884 18 N -0.641 5.641 19 C 0.678 3.322 20 O -0.589 6.589 21 O -0.369 6.369 22 C 0.121 3.879 23 C -0.180 4.180 24 C -0.136 4.136 25 C -0.177 4.177 26 C 0.086 3.914 27 H 0.064 0.936 28 H 0.053 0.947 29 H 0.051 0.949 30 H 0.042 0.958 31 H 0.040 0.960 32 H 0.264 0.736 33 H 0.338 0.662 34 H 0.100 0.900 35 H 0.070 0.930 36 H 0.092 0.908 37 H 0.140 0.860 38 H 0.057 0.943 39 H 0.095 0.905 40 H 0.060 0.940 41 H 0.069 0.931 42 H 0.106 0.894 43 H 0.065 0.935 44 H 0.061 0.939 45 H 0.094 0.906 46 H 0.062 0.938 47 H 0.132 0.868 48 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.129 14.795 9.513 23.865 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.155 4.155 3 C 0.092 3.908 4 H 0.031 0.969 5 C -0.572 4.572 6 H 0.055 0.945 7 C -0.180 4.180 8 N -0.583 5.583 9 Si 0.749 3.251 10 H -0.197 1.197 11 H -0.222 1.222 12 H -0.141 1.141 13 N -0.312 5.312 14 C -0.082 4.082 15 C 0.072 3.928 16 F -0.167 7.167 17 C -0.005 4.005 18 N -0.383 5.383 19 C 0.435 3.565 20 O -0.480 6.480 21 O -0.283 6.283 22 C 0.085 3.915 23 C -0.237 4.237 24 C -0.193 4.193 25 C -0.234 4.234 26 C -0.037 4.037 27 H 0.083 0.917 28 H 0.072 0.928 29 H 0.070 0.930 30 H 0.060 0.940 31 H 0.058 0.942 32 H 0.073 0.927 33 H 0.155 0.845 34 H 0.118 0.882 35 H 0.088 0.912 36 H 0.110 0.890 37 H 0.158 0.842 38 H 0.076 0.924 39 H 0.114 0.886 40 H 0.079 0.921 41 H 0.088 0.912 42 H 0.125 0.875 43 H 0.084 0.916 44 H 0.080 0.920 45 H 0.113 0.887 46 H 0.081 0.919 47 H 0.150 0.850 48 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -16.775 14.412 9.999 24.271 hybrid contribution 0.785 0.268 -0.953 1.263 sum -15.991 14.680 9.046 23.517 Atomic orbital electron populations 1.21827 0.95275 1.01241 1.01609 1.21869 0.95754 0.98189 0.99688 1.19263 0.92224 0.91921 0.87397 0.96879 1.21523 0.91747 1.42256 1.01667 0.94501 1.25794 0.95664 0.94077 1.02418 1.70115 1.12633 1.45869 1.29722 0.86251 0.81636 0.78269 0.78903 1.19715 1.22225 1.14090 1.60366 1.06949 1.34164 1.29750 1.22519 0.95205 0.97859 0.92590 1.22041 0.97921 0.86698 0.86115 1.92866 1.96750 1.68281 1.58825 1.23814 0.96637 0.85235 0.94830 1.48138 1.12665 1.39401 1.38104 1.17358 0.82903 0.77687 0.78517 1.90882 1.15627 1.71658 1.69860 1.86340 1.40143 1.49976 1.51880 1.22510 0.95209 0.87573 0.86193 1.22478 1.01046 1.01405 0.98755 1.21892 0.96953 0.99488 1.00927 1.22457 0.99679 0.99362 1.01940 1.23957 0.86677 0.92102 1.00914 0.91679 0.92802 0.93017 0.93986 0.94157 0.92683 0.84453 0.88203 0.91153 0.88958 0.84205 0.92423 0.88582 0.92093 0.91196 0.87508 0.91609 0.92014 0.88686 0.91896 0.85035 0.89382 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.39 8.65 71.98 0.62 -3.76 16 2 C -0.12 -4.68 4.97 30.60 0.15 -4.53 16 3 C 0.20 8.40 1.80 44.17 0.08 8.48 16 4 H 0.01 0.54 6.42 -2.39 -0.02 0.53 16 5 C -0.53 -28.40 9.00 25.60 0.23 -28.17 16 6 H 0.04 2.19 7.73 -2.91 -0.02 2.17 16 7 C 0.02 1.04 5.36 84.66 0.45 1.49 16 8 N -0.94 -57.16 13.96 21.45 0.30 -56.86 16 9 Si 0.93 40.87 25.87 68.60 1.77 42.65 16 10 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 11 H -0.30 -13.35 7.11 99.48 0.71 -12.64 16 12 H -0.22 -8.54 5.35 99.48 0.53 -8.01 16 13 N -0.68 -24.08 5.82 -495.46 -2.88 -26.96 16 14 C 0.05 1.22 4.83 86.30 0.42 1.64 16 15 C 0.09 2.16 2.10 -10.46 -0.02 2.14 16 16 F -0.19 -5.81 17.03 44.97 0.77 -5.04 16 17 C 0.12 2.29 8.10 83.18 0.67 2.96 16 18 N -0.64 -15.69 3.69 -988.83 -3.65 -19.33 16 19 C 0.68 19.08 8.26 129.79 1.07 20.15 16 20 O -0.59 -18.57 12.66 19.82 0.25 -18.32 16 21 O -0.37 -9.44 9.91 -55.44 -0.55 -9.99 16 22 C 0.12 2.36 1.13 -10.79 -0.01 2.35 16 23 C -0.18 -3.48 8.37 71.98 0.60 -2.88 16 24 C -0.14 -1.80 8.85 71.98 0.64 -1.16 16 25 C -0.18 -3.18 8.37 71.98 0.60 -2.58 16 26 C 0.09 1.84 8.13 83.18 0.68 2.51 16 27 H 0.06 1.91 6.30 -2.39 -0.02 1.90 16 28 H 0.05 1.49 8.11 -2.39 -0.02 1.47 16 29 H 0.05 1.44 8.14 -2.39 -0.02 1.42 16 30 H 0.04 1.77 4.72 -2.39 -0.01 1.76 16 31 H 0.04 1.75 8.14 -2.39 -0.02 1.73 16 32 H 0.26 15.08 8.31 -92.71 -0.77 14.31 16 33 H 0.34 12.46 8.03 -89.69 -0.72 11.74 16 34 H 0.10 2.34 5.55 -2.39 -0.01 2.33 16 35 H 0.07 1.51 7.81 -2.38 -0.02 1.49 16 36 H 0.09 1.88 8.14 -2.39 -0.02 1.86 16 37 H 0.14 1.83 8.10 -2.39 -0.02 1.82 16 38 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 39 H 0.10 1.30 8.14 -2.39 -0.02 1.28 16 40 H 0.06 1.53 5.88 -2.39 -0.01 1.52 16 41 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 42 H 0.11 0.85 8.14 -2.39 -0.02 0.83 16 43 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 44 H 0.06 1.45 5.88 -2.39 -0.01 1.44 16 45 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 46 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 47 H 0.13 2.14 7.87 -2.39 -0.02 2.12 16 48 H 0.09 2.01 8.14 -2.39 -0.02 1.99 16 Total: -1.00 -70.18 376.73 2.26 -67.92 By element: Atomic # 1 Polarization: 27.24 SS G_CDS: 0.06 Total: 27.30 kcal Atomic # 6 Polarization: -7.54 SS G_CDS: 6.19 Total: -1.35 kcal Atomic # 7 Polarization: -96.93 SS G_CDS: -6.23 Total: -103.16 kcal Atomic # 8 Polarization: -28.01 SS G_CDS: -0.30 Total: -28.31 kcal Atomic # 9 Polarization: -5.81 SS G_CDS: 0.77 Total: -5.04 kcal Atomic # 14 Polarization: 40.87 SS G_CDS: 1.77 Total: 42.65 kcal Total: -70.18 2.26 -67.92 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255152557.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.101 kcal (2) G-P(sol) polarization free energy of solvation -70.179 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.281 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.256 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.923 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.024 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds