Wall clock time and date at job start Tue Mar 31 2020 10:50:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.46948 * 2 1 4 4 H 1.09006 * 109.46710 * 179.44723 * 3 2 1 5 5 C 1.50694 * 109.47181 * 59.44854 * 3 2 1 6 6 H 1.08011 * 119.99445 * 240.00030 * 5 3 2 7 7 C 1.37868 * 120.00630 * 59.99762 * 5 3 2 8 8 N 1.31522 * 119.99881 * 359.97438 * 7 5 3 9 9 Si 1.86802 * 120.00208 * 179.97438 * 7 5 3 10 10 H 1.48501 * 109.47099 * 90.00180 * 9 7 5 11 11 H 1.48502 * 109.47124 * 209.99749 * 9 7 5 12 12 H 1.48489 * 109.47185 * 329.99861 * 9 7 5 13 13 N 1.46893 * 109.47113 * 299.44102 * 3 2 1 14 14 C 1.48533 * 111.00269 * 300.07019 * 13 3 2 15 15 C 1.54934 * 103.22639 * 200.27489 * 14 13 3 16 16 H 1.08999 * 110.72891 * 279.05532 * 15 14 13 17 17 F 1.39905 * 110.72350 * 155.77408 * 15 14 13 18 18 C 1.54594 * 102.92413 * 37.41865 * 15 14 13 19 19 H 1.08994 * 110.31358 * 96.95268 * 18 15 14 20 20 N 1.46499 * 110.39503 * 219.08142 * 18 15 14 21 21 C 1.34773 * 120.00201 * 272.15102 * 20 18 15 22 22 O 1.21513 * 119.99861 * 359.97438 * 21 20 18 23 23 O 1.34628 * 120.00381 * 179.97438 * 21 20 18 24 24 C 1.45203 * 117.00558 * 180.02562 * 23 21 20 25 25 C 1.52999 * 109.46932 * 59.99928 * 24 23 21 26 26 C 1.52992 * 109.47637 * 180.02562 * 24 23 21 27 27 C 1.53000 * 109.46864 * 300.00486 * 24 23 21 28 28 C 1.47897 * 111.00134 * 182.67185 * 13 3 2 29 29 H 1.08997 * 109.47150 * 64.53184 * 1 2 3 30 30 H 1.09000 * 109.47000 * 184.52999 * 1 2 3 31 31 H 1.09002 * 109.47341 * 304.52769 * 1 2 3 32 32 H 1.09003 * 109.47296 * 239.99642 * 2 1 3 33 33 H 1.09004 * 109.46733 * 119.99488 * 2 1 3 34 34 H 0.96993 * 120.00150 * 179.97438 * 8 7 5 35 35 H 1.08996 * 110.66834 * 318.71807 * 14 13 3 36 36 H 1.09002 * 110.66577 * 81.67502 * 14 13 3 37 37 H 0.97007 * 119.99785 * 92.14814 * 20 18 15 38 38 H 1.08996 * 109.47493 * 60.00157 * 25 24 23 39 39 H 1.09003 * 109.47131 * 180.02562 * 25 24 23 40 40 H 1.09004 * 109.47041 * 300.00110 * 25 24 23 41 41 H 1.09009 * 109.46977 * 60.00095 * 26 24 23 42 42 H 1.08997 * 109.47356 * 180.02562 * 26 24 23 43 43 H 1.09001 * 109.47242 * 300.00210 * 26 24 23 44 44 H 1.09000 * 109.47253 * 59.99292 * 27 24 23 45 45 H 1.09003 * 109.47300 * 179.97438 * 27 24 23 46 46 H 1.09001 * 109.47031 * 299.99838 * 27 24 23 47 47 H 1.08995 * 109.91706 * 26.49786 * 28 13 3 48 48 H 1.09002 * 110.08523 * 265.29014 * 28 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1300 1.4425 0.0099 5 6 1.5265 2.1568 1.2235 6 1 0.9064 3.0347 1.1159 7 6 1.8481 1.6899 2.4802 8 7 2.6026 0.6207 2.6113 9 14 1.2121 2.5759 3.9968 10 1 -0.0999 2.0028 4.3912 11 1 2.1802 2.4084 5.1104 12 1 1.0504 4.0207 3.6947 13 7 1.5614 2.1311 -1.2061 14 6 2.0475 1.4526 -2.4347 15 6 1.9190 2.5505 -3.5204 16 1 0.8928 2.6177 -3.8815 17 9 2.8023 2.3070 -4.5777 18 6 2.3169 3.8365 -2.7603 19 1 3.3660 4.0724 -2.9389 20 7 1.4675 4.9567 -3.1726 21 6 1.8144 5.7101 -4.2349 22 8 2.8319 5.4605 -4.8505 23 8 1.0336 6.7392 -4.6142 24 6 1.4686 7.5069 -5.7673 25 6 1.5587 6.5879 -6.9873 26 6 0.4626 8.6257 -6.0443 27 6 2.8434 8.1161 -5.4851 28 6 2.0880 3.5115 -1.2725 29 1 -0.3633 0.4419 -0.9278 30 1 -0.3633 -1.0245 0.0812 31 1 -0.3634 0.5825 0.8466 32 1 1.8934 -0.5139 -0.8900 33 1 1.8933 -0.5138 0.8901 34 1 2.8292 0.2924 3.4954 35 1 3.0870 1.1457 -2.3190 36 1 1.4190 0.5950 -2.6749 37 1 0.6554 5.1561 -2.6810 38 1 0.5794 6.1538 -7.1883 39 1 1.8858 7.1641 -7.8528 40 1 2.2758 5.7910 -6.7897 41 1 0.3989 9.2804 -5.1750 42 1 0.7890 9.2017 -6.9102 43 1 -0.5170 8.1921 -6.2451 44 1 3.5604 7.3192 -5.2875 45 1 3.1703 8.6921 -6.3509 46 1 2.7793 8.7708 -4.6160 47 1 3.0306 3.5759 -0.7291 48 1 1.3659 4.2085 -0.8471 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255165131.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:50:27 Heat of formation + Delta-G solvation = -129.741497 kcal Electronic energy + Delta-G solvation = -28254.264520 eV Core-core repulsion = 24258.668224 eV Total energy + Delta-G solvation = -3995.596296 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.195 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -47.30197 -40.77290 -38.71372 -37.12014 -35.03675 -34.19680 -33.09323 -31.24042 -29.06750 -27.96175 -27.58477 -27.51694 -25.91663 -23.62298 -22.59247 -21.61617 -20.59379 -20.06489 -19.14254 -18.21031 -17.00818 -16.39508 -16.17055 -16.10802 -15.68617 -14.84328 -14.69420 -14.55143 -14.42141 -14.19227 -13.93437 -13.59248 -13.33634 -12.93571 -12.69666 -12.62489 -12.41493 -12.39895 -12.04764 -12.03676 -11.88167 -11.72314 -11.62300 -11.40528 -11.22421 -11.09052 -10.94733 -10.82099 -10.58139 -10.45936 -10.43358 -10.08825 -9.97639 -9.75721 -9.51917 -9.04026 -8.94617 -8.50253 -7.52156 -6.08752 -4.13365 2.14315 2.86345 3.25772 3.33255 3.35063 4.08871 4.31657 4.51171 4.55790 4.59945 4.70753 4.74238 4.77501 5.01379 5.18147 5.27076 5.27866 5.36131 5.43109 5.50804 5.56982 5.60935 5.70515 5.76578 5.80256 5.94242 6.12410 6.15422 6.19821 6.23442 6.34350 6.40920 6.46852 6.51381 6.57861 6.69727 7.01287 7.07530 7.23719 7.45767 7.48634 7.61921 7.74465 7.90552 8.19109 8.38171 8.42111 8.90638 9.51210 10.97697 Molecular weight = 316.19amu Principal moments of inertia in cm(-1) A = 0.018567 B = 0.003303 C = 0.002984 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1507.652212 B = 8476.264166 C = 9381.875021 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.111 4.111 3 C 0.209 3.791 4 H 0.004 0.996 5 C -0.500 4.500 6 H 0.062 0.938 7 C 0.062 3.938 8 N -0.890 5.890 9 Si 0.895 3.105 10 H -0.280 1.280 11 H -0.288 1.288 12 H -0.275 1.275 13 N -0.501 5.501 14 C 0.015 3.985 15 C 0.073 3.927 16 H 0.096 0.904 17 F -0.205 7.205 18 C 0.127 3.873 19 H 0.105 0.895 20 N -0.698 5.698 21 C 0.647 3.353 22 O -0.563 6.563 23 O -0.366 6.366 24 C 0.136 3.864 25 C -0.184 4.184 26 C -0.140 4.140 27 C -0.184 4.184 28 C 0.048 3.952 29 H 0.039 0.961 30 H 0.016 0.984 31 H 0.061 0.939 32 H 0.014 0.986 33 H 0.093 0.907 34 H 0.261 0.739 35 H 0.052 0.948 36 H 0.089 0.911 37 H 0.410 0.590 38 H 0.059 0.941 39 H 0.068 0.932 40 H 0.089 0.911 41 H 0.066 0.934 42 H 0.079 0.921 43 H 0.066 0.934 44 H 0.089 0.911 45 H 0.068 0.932 46 H 0.059 0.941 47 H 0.065 0.935 48 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.203 10.934 -14.588 18.510 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.150 4.150 3 C 0.103 3.897 4 H 0.022 0.978 5 C -0.539 4.539 6 H 0.080 0.920 7 C -0.140 4.140 8 N -0.529 5.529 9 Si 0.723 3.277 10 H -0.206 1.206 11 H -0.214 1.214 12 H -0.199 1.199 13 N -0.226 5.226 14 C -0.114 4.114 15 C 0.035 3.965 16 H 0.114 0.886 17 F -0.186 7.186 18 C 0.022 3.978 19 H 0.123 0.877 20 N -0.357 5.357 21 C 0.400 3.600 22 O -0.451 6.451 23 O -0.281 6.281 24 C 0.099 3.901 25 C -0.241 4.241 26 C -0.197 4.197 27 C -0.241 4.241 28 C -0.081 4.081 29 H 0.058 0.942 30 H 0.035 0.965 31 H 0.080 0.920 32 H 0.033 0.967 33 H 0.111 0.889 34 H 0.071 0.929 35 H 0.070 0.930 36 H 0.108 0.892 37 H 0.246 0.754 38 H 0.078 0.922 39 H 0.087 0.913 40 H 0.108 0.892 41 H 0.085 0.915 42 H 0.097 0.903 43 H 0.085 0.915 44 H 0.107 0.893 45 H 0.087 0.913 46 H 0.078 0.922 47 H 0.083 0.917 48 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -3.156 10.755 -14.778 18.548 hybrid contribution 0.287 0.458 0.998 1.135 sum -2.869 11.213 -13.780 17.996 Atomic orbital electron populations 1.21477 0.97134 0.97807 1.01461 1.21552 0.95360 0.97802 1.00270 1.19545 0.93244 0.91285 0.85625 0.97840 1.20969 1.31413 1.12067 0.89439 0.91991 1.24895 0.95091 0.95062 0.98947 1.69872 1.36879 1.22878 1.23278 0.86550 0.78627 0.80012 0.82543 1.20647 1.21371 1.19947 1.64960 1.54985 1.00346 1.02324 1.23676 1.00337 0.96663 0.90762 1.22995 0.92675 0.95894 0.84972 0.88623 1.92814 1.71316 1.95298 1.59159 1.22574 0.95589 0.83863 0.95789 0.87738 1.44880 1.28758 1.31533 1.30538 1.18144 0.81725 0.78992 0.81094 1.90920 1.26406 1.72255 1.55546 1.86299 1.51652 1.41705 1.48430 1.22032 0.95070 0.90148 0.82801 1.22518 1.03588 1.01332 0.96659 1.21854 0.98790 0.96658 1.02438 1.22520 0.96944 1.02414 1.02217 1.22884 1.00887 0.93800 0.90489 0.94216 0.96459 0.92023 0.96735 0.88887 0.92879 0.92961 0.89249 0.75422 0.92224 0.91303 0.89187 0.91481 0.90267 0.91498 0.89264 0.91292 0.92190 0.91705 0.89606 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.52 9.53 37.16 0.35 -2.17 16 2 C -0.11 -2.50 5.22 -26.73 -0.14 -2.64 16 3 C 0.21 4.79 1.44 -68.87 -0.10 4.69 16 4 H 0.00 0.10 7.99 -51.93 -0.41 -0.31 16 5 C -0.50 -12.48 6.77 -34.45 -0.23 -12.72 16 6 H 0.06 1.54 7.42 -52.48 -0.39 1.15 16 7 C 0.06 1.60 5.30 -17.82 -0.09 1.50 16 8 N -0.89 -24.05 11.32 55.43 0.63 -23.42 16 9 Si 0.89 20.31 29.54 -169.99 -5.02 15.29 16 10 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 11 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 12 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 13 N -0.50 -9.51 4.44 -223.89 -1.00 -10.51 16 14 C 0.01 0.25 5.21 -1.90 -0.01 0.24 16 15 C 0.07 1.14 4.58 -24.87 -0.11 1.03 16 16 H 0.10 1.40 8.06 -51.93 -0.42 0.98 16 17 F -0.21 -3.57 17.19 2.25 0.04 -3.53 16 18 C 0.13 1.93 3.13 -66.57 -0.21 1.72 16 19 H 0.10 1.72 7.57 -51.93 -0.39 1.32 16 20 N -0.70 -9.48 5.08 -57.40 -0.29 -9.77 16 21 C 0.65 9.47 8.06 54.05 0.44 9.91 16 22 O -0.56 -9.46 11.55 -19.28 -0.22 -9.68 16 23 O -0.37 -4.73 9.94 -40.29 -0.40 -5.13 16 24 C 0.14 1.46 1.13 -90.62 -0.10 1.36 16 25 C -0.18 -1.95 8.37 37.16 0.31 -1.64 16 26 C -0.14 -1.09 8.85 37.15 0.33 -0.76 16 27 C -0.18 -1.93 8.37 37.16 0.31 -1.62 16 28 C 0.05 0.82 5.57 -2.75 -0.02 0.81 16 29 H 0.04 0.77 7.76 -51.93 -0.40 0.37 16 30 H 0.02 0.32 8.14 -51.93 -0.42 -0.11 16 31 H 0.06 1.40 7.04 -51.93 -0.37 1.03 16 32 H 0.01 0.29 6.90 -51.93 -0.36 -0.06 16 33 H 0.09 2.36 6.08 -51.93 -0.32 2.05 16 34 H 0.26 6.81 8.31 -40.82 -0.34 6.47 16 35 H 0.05 0.94 8.00 -51.93 -0.42 0.52 16 36 H 0.09 1.47 7.64 -51.93 -0.40 1.08 16 37 H 0.41 4.82 8.44 -40.82 -0.34 4.47 16 38 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 39 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 40 H 0.09 1.21 5.88 -51.93 -0.31 0.90 16 41 H 0.07 0.51 8.14 -51.92 -0.42 0.08 16 42 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 43 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 44 H 0.09 1.17 5.88 -51.93 -0.31 0.87 16 45 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 46 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 47 H 0.06 1.20 7.69 -51.93 -0.40 0.80 16 48 H 0.09 1.41 7.48 -51.93 -0.39 1.02 16 LS Contribution 375.21 15.07 5.65 5.65 Total: -1.00 -27.86 375.21 -8.02 -35.88 By element: Atomic # 1 Polarization: 13.65 SS G_CDS: -8.13 Total: 5.52 kcal Atomic # 6 Polarization: -1.02 SS G_CDS: 0.72 Total: -0.30 kcal Atomic # 7 Polarization: -43.04 SS G_CDS: -0.66 Total: -43.70 kcal Atomic # 8 Polarization: -14.19 SS G_CDS: -0.62 Total: -14.81 kcal Atomic # 9 Polarization: -3.57 SS G_CDS: 0.04 Total: -3.53 kcal Atomic # 14 Polarization: 20.31 SS G_CDS: -5.02 Total: 15.29 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -27.86 -8.02 -35.88 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255165131.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.864 kcal (2) G-P(sol) polarization free energy of solvation -27.861 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.725 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.017 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.878 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.741 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds