Wall clock time and date at job start Tue Mar 31 2020 10:50:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.46948 * 2 1 4 4 H 1.09006 * 109.46710 * 179.44723 * 3 2 1 5 5 C 1.50694 * 109.47181 * 59.44854 * 3 2 1 6 6 H 1.08011 * 119.99445 * 240.00030 * 5 3 2 7 7 C 1.37868 * 120.00630 * 59.99762 * 5 3 2 8 8 N 1.31522 * 119.99881 * 359.97438 * 7 5 3 9 9 Si 1.86802 * 120.00208 * 179.97438 * 7 5 3 10 10 H 1.48501 * 109.47099 * 90.00180 * 9 7 5 11 11 H 1.48502 * 109.47124 * 209.99749 * 9 7 5 12 12 H 1.48489 * 109.47185 * 329.99861 * 9 7 5 13 13 N 1.46893 * 109.47113 * 299.44102 * 3 2 1 14 14 C 1.48533 * 111.00269 * 300.07019 * 13 3 2 15 15 C 1.54934 * 103.22639 * 200.27489 * 14 13 3 16 16 H 1.08999 * 110.72891 * 279.05532 * 15 14 13 17 17 F 1.39905 * 110.72350 * 155.77408 * 15 14 13 18 18 C 1.54594 * 102.92413 * 37.41865 * 15 14 13 19 19 H 1.08994 * 110.31358 * 96.95268 * 18 15 14 20 20 N 1.46499 * 110.39503 * 219.08142 * 18 15 14 21 21 C 1.34773 * 120.00201 * 272.15102 * 20 18 15 22 22 O 1.21513 * 119.99861 * 359.97438 * 21 20 18 23 23 O 1.34628 * 120.00381 * 179.97438 * 21 20 18 24 24 C 1.45203 * 117.00558 * 180.02562 * 23 21 20 25 25 C 1.52999 * 109.46932 * 59.99928 * 24 23 21 26 26 C 1.52992 * 109.47637 * 180.02562 * 24 23 21 27 27 C 1.53000 * 109.46864 * 300.00486 * 24 23 21 28 28 C 1.47897 * 111.00134 * 182.67185 * 13 3 2 29 29 H 1.08997 * 109.47150 * 64.53184 * 1 2 3 30 30 H 1.09000 * 109.47000 * 184.52999 * 1 2 3 31 31 H 1.09002 * 109.47341 * 304.52769 * 1 2 3 32 32 H 1.09003 * 109.47296 * 239.99642 * 2 1 3 33 33 H 1.09004 * 109.46733 * 119.99488 * 2 1 3 34 34 H 0.96993 * 120.00150 * 179.97438 * 8 7 5 35 35 H 1.08996 * 110.66834 * 318.71807 * 14 13 3 36 36 H 1.09002 * 110.66577 * 81.67502 * 14 13 3 37 37 H 0.97007 * 119.99785 * 92.14814 * 20 18 15 38 38 H 1.08996 * 109.47493 * 60.00157 * 25 24 23 39 39 H 1.09003 * 109.47131 * 180.02562 * 25 24 23 40 40 H 1.09004 * 109.47041 * 300.00110 * 25 24 23 41 41 H 1.09009 * 109.46977 * 60.00095 * 26 24 23 42 42 H 1.08997 * 109.47356 * 180.02562 * 26 24 23 43 43 H 1.09001 * 109.47242 * 300.00210 * 26 24 23 44 44 H 1.09000 * 109.47253 * 59.99292 * 27 24 23 45 45 H 1.09003 * 109.47300 * 179.97438 * 27 24 23 46 46 H 1.09001 * 109.47031 * 299.99838 * 27 24 23 47 47 H 1.08995 * 109.91706 * 26.49786 * 28 13 3 48 48 H 1.09002 * 110.08523 * 265.29014 * 28 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1300 1.4425 0.0099 5 6 1.5265 2.1568 1.2235 6 1 0.9064 3.0347 1.1159 7 6 1.8481 1.6899 2.4802 8 7 2.6026 0.6207 2.6113 9 14 1.2121 2.5759 3.9968 10 1 -0.0999 2.0028 4.3912 11 1 2.1802 2.4084 5.1104 12 1 1.0504 4.0207 3.6947 13 7 1.5614 2.1311 -1.2061 14 6 2.0475 1.4526 -2.4347 15 6 1.9190 2.5505 -3.5204 16 1 0.8928 2.6177 -3.8815 17 9 2.8023 2.3070 -4.5777 18 6 2.3169 3.8365 -2.7603 19 1 3.3660 4.0724 -2.9389 20 7 1.4675 4.9567 -3.1726 21 6 1.8144 5.7101 -4.2349 22 8 2.8319 5.4605 -4.8505 23 8 1.0336 6.7392 -4.6142 24 6 1.4686 7.5069 -5.7673 25 6 1.5587 6.5879 -6.9873 26 6 0.4626 8.6257 -6.0443 27 6 2.8434 8.1161 -5.4851 28 6 2.0880 3.5115 -1.2725 29 1 -0.3633 0.4419 -0.9278 30 1 -0.3633 -1.0245 0.0812 31 1 -0.3634 0.5825 0.8466 32 1 1.8934 -0.5139 -0.8900 33 1 1.8933 -0.5138 0.8901 34 1 2.8292 0.2924 3.4954 35 1 3.0870 1.1457 -2.3190 36 1 1.4190 0.5950 -2.6749 37 1 0.6554 5.1561 -2.6810 38 1 0.5794 6.1538 -7.1883 39 1 1.8858 7.1641 -7.8528 40 1 2.2758 5.7910 -6.7897 41 1 0.3989 9.2804 -5.1750 42 1 0.7890 9.2017 -6.9102 43 1 -0.5170 8.1921 -6.2451 44 1 3.5604 7.3192 -5.2875 45 1 3.1703 8.6921 -6.3509 46 1 2.7793 8.7708 -4.6160 47 1 3.0306 3.5759 -0.7291 48 1 1.3659 4.2085 -0.8471 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255165131.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:50:26 Heat of formation + Delta-G solvation = -146.998383 kcal Electronic energy + Delta-G solvation = -28255.012835 eV Core-core repulsion = 24258.668224 eV Total energy + Delta-G solvation = -3996.344611 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.195 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -48.67166 -41.85028 -40.11872 -38.29049 -36.50370 -35.29659 -34.48791 -33.02597 -30.60215 -29.34968 -28.33880 -28.26497 -27.72106 -25.32670 -23.75243 -23.11811 -21.90813 -21.08208 -20.87996 -19.29682 -18.29161 -18.06417 -17.45062 -17.21707 -17.13624 -16.37262 -16.02041 -15.82061 -15.67001 -15.47218 -15.19693 -14.99576 -14.60568 -14.42782 -14.22468 -13.94643 -13.58177 -13.35408 -13.21238 -13.15786 -12.91898 -12.86919 -12.83866 -12.72973 -12.65171 -12.46846 -12.34327 -12.30437 -12.20834 -12.06156 -11.75456 -11.50582 -11.37019 -11.29004 -11.09857 -10.81323 -10.46212 -10.25227 -9.16737 -8.06393 -6.16088 1.08592 1.45102 1.47490 1.55257 1.71861 2.44843 3.04683 3.08047 3.22776 3.33750 3.39745 3.69501 3.78108 3.82664 3.90155 3.97432 4.20258 4.39553 4.50937 4.60426 4.63046 4.63933 4.74436 4.75301 4.79174 4.79955 4.84866 4.87384 4.90791 4.92465 4.97560 5.12525 5.25171 5.29489 5.31145 5.37585 5.40556 5.45360 5.57031 5.70971 5.77383 5.87532 6.16671 6.32297 6.37517 6.54076 6.94518 7.31980 7.51687 8.99255 Molecular weight = 316.19amu Principal moments of inertia in cm(-1) A = 0.018567 B = 0.003303 C = 0.002984 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1507.652212 B = 8476.264166 C = 9381.875021 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.109 4.109 3 C 0.216 3.784 4 H -0.034 1.034 5 C -0.502 4.502 6 H 0.062 0.938 7 C 0.016 3.984 8 N -0.919 5.919 9 Si 0.951 3.049 10 H -0.278 1.278 11 H -0.291 1.291 12 H -0.267 1.267 13 N -0.498 5.498 14 C 0.016 3.984 15 C 0.081 3.919 16 H 0.115 0.885 17 F -0.213 7.213 18 C 0.142 3.858 19 H 0.092 0.908 20 N -0.690 5.690 21 C 0.647 3.353 22 O -0.586 6.586 23 O -0.366 6.366 24 C 0.124 3.876 25 C -0.180 4.180 26 C -0.135 4.135 27 C -0.181 4.181 28 C 0.053 3.947 29 H 0.055 0.945 30 H 0.033 0.967 31 H 0.039 0.961 32 H 0.028 0.972 33 H 0.061 0.939 34 H 0.259 0.741 35 H 0.040 0.960 36 H 0.101 0.899 37 H 0.420 0.580 38 H 0.062 0.938 39 H 0.092 0.908 40 H 0.058 0.942 41 H 0.069 0.931 42 H 0.103 0.897 43 H 0.070 0.930 44 H 0.059 0.941 45 H 0.092 0.908 46 H 0.061 0.939 47 H 0.045 0.955 48 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.958 12.540 -15.835 20.798 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.147 4.147 3 C 0.109 3.891 4 H -0.016 1.016 5 C -0.540 4.540 6 H 0.080 0.920 7 C -0.183 4.183 8 N -0.559 5.559 9 Si 0.777 3.223 10 H -0.204 1.204 11 H -0.218 1.218 12 H -0.191 1.191 13 N -0.223 5.223 14 C -0.113 4.113 15 C 0.043 3.957 16 H 0.133 0.867 17 F -0.194 7.194 18 C 0.036 3.964 19 H 0.110 0.890 20 N -0.350 5.350 21 C 0.400 3.600 22 O -0.477 6.477 23 O -0.280 6.280 24 C 0.087 3.913 25 C -0.237 4.237 26 C -0.191 4.191 27 C -0.238 4.238 28 C -0.076 4.076 29 H 0.074 0.926 30 H 0.052 0.948 31 H 0.058 0.942 32 H 0.047 0.953 33 H 0.080 0.920 34 H 0.068 0.932 35 H 0.058 0.942 36 H 0.119 0.881 37 H 0.259 0.741 38 H 0.081 0.919 39 H 0.110 0.890 40 H 0.077 0.923 41 H 0.088 0.912 42 H 0.122 0.878 43 H 0.089 0.911 44 H 0.078 0.922 45 H 0.111 0.889 46 H 0.080 0.920 47 H 0.064 0.936 48 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -4.939 12.389 -16.037 20.858 hybrid contribution 0.873 -0.006 1.305 1.571 sum -4.066 12.382 -14.732 19.669 Atomic orbital electron populations 1.21342 0.95489 0.98633 1.01230 1.21439 0.96696 0.97180 0.99414 1.19302 0.90929 0.92026 0.86845 1.01621 1.21209 1.30713 1.11880 0.90243 0.91963 1.25581 0.95458 0.95713 1.01547 1.70010 1.38184 1.24207 1.23525 0.85663 0.77880 0.79343 0.79395 1.20377 1.21753 1.19113 1.64872 1.54676 1.01057 1.01668 1.23696 0.99824 0.97468 0.90326 1.22988 0.93325 0.95101 0.84290 0.86715 1.92802 1.71807 1.95319 1.59490 1.22208 0.95293 0.84455 0.94433 0.88996 1.44689 1.28823 1.30951 1.30536 1.18233 0.81530 0.79261 0.80926 1.90925 1.27491 1.72926 1.56319 1.86319 1.51261 1.41095 1.49358 1.22446 0.96147 0.90684 0.81978 1.22472 1.02882 1.00777 0.97581 1.21880 0.98065 0.95622 1.03577 1.22482 0.96244 1.01634 1.03420 1.22815 1.00142 0.93001 0.91630 0.92630 0.94794 0.94207 0.95299 0.92028 0.93179 0.94182 0.88081 0.74136 0.91893 0.88961 0.92276 0.91187 0.87850 0.91115 0.92243 0.88945 0.91952 0.93617 0.88586 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.42 9.53 71.98 0.69 -3.73 16 2 C -0.11 -4.90 5.22 30.59 0.16 -4.74 16 3 C 0.22 10.03 1.44 44.17 0.06 10.09 16 4 H -0.03 -1.80 7.99 -2.38 -0.02 -1.81 16 5 C -0.50 -25.16 6.77 25.60 0.17 -24.99 16 6 H 0.06 3.06 7.42 -2.91 -0.02 3.04 16 7 C 0.02 0.82 5.30 84.65 0.45 1.27 16 8 N -0.92 -50.77 11.32 21.45 0.24 -50.53 16 9 Si 0.95 41.71 29.54 68.60 2.03 43.73 16 10 H -0.28 -12.02 7.11 99.48 0.71 -11.31 16 11 H -0.29 -12.88 7.11 99.48 0.71 -12.17 16 12 H -0.27 -11.26 7.11 99.48 0.71 -10.55 16 13 N -0.50 -18.66 4.44 -862.26 -3.83 -22.49 16 14 C 0.02 0.53 5.21 86.65 0.45 0.98 16 15 C 0.08 2.43 4.58 31.80 0.15 2.58 16 16 H 0.12 3.08 8.06 -2.39 -0.02 3.06 16 17 F -0.21 -7.26 17.19 44.97 0.77 -6.48 16 18 C 0.14 4.24 3.13 45.87 0.14 4.38 16 19 H 0.09 3.04 7.57 -2.39 -0.02 3.03 16 20 N -0.69 -17.89 5.08 -565.94 -2.87 -20.77 16 21 C 0.65 18.38 8.06 129.79 1.05 19.42 16 22 O -0.59 -19.69 11.55 19.80 0.23 -19.46 16 23 O -0.37 -8.91 9.94 -55.37 -0.55 -9.46 16 24 C 0.12 2.41 1.13 -10.80 -0.01 2.40 16 25 C -0.18 -3.52 8.37 71.98 0.60 -2.92 16 26 C -0.13 -1.68 8.85 71.98 0.64 -1.05 16 27 C -0.18 -3.54 8.37 71.98 0.60 -2.94 16 28 C 0.05 1.78 5.57 86.45 0.48 2.27 16 29 H 0.05 2.03 7.76 -2.39 -0.02 2.02 16 30 H 0.03 1.22 8.14 -2.39 -0.02 1.20 16 31 H 0.04 1.76 7.04 -2.39 -0.02 1.74 16 32 H 0.03 1.18 6.90 -2.39 -0.02 1.16 16 33 H 0.06 3.19 6.08 -2.39 -0.01 3.17 16 34 H 0.26 13.81 8.31 -92.71 -0.77 13.04 16 35 H 0.04 1.45 8.00 -2.39 -0.02 1.43 16 36 H 0.10 3.15 7.64 -2.39 -0.02 3.13 16 37 H 0.42 9.10 8.44 -92.70 -0.78 8.32 16 38 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 39 H 0.09 1.32 8.14 -2.39 -0.02 1.31 16 40 H 0.06 1.56 5.88 -2.39 -0.01 1.54 16 41 H 0.07 0.85 8.14 -2.38 -0.02 0.83 16 42 H 0.10 0.81 8.14 -2.39 -0.02 0.79 16 43 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 44 H 0.06 1.55 5.88 -2.39 -0.01 1.54 16 45 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 46 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 47 H 0.05 1.73 7.69 -2.39 -0.02 1.71 16 48 H 0.10 3.04 7.48 -2.39 -0.02 3.02 16 Total: -1.00 -60.57 375.21 1.81 -58.76 By element: Atomic # 1 Polarization: 23.50 SS G_CDS: 0.17 Total: 23.66 kcal Atomic # 6 Polarization: -2.60 SS G_CDS: 5.63 Total: 3.03 kcal Atomic # 7 Polarization: -87.32 SS G_CDS: -6.46 Total: -93.78 kcal Atomic # 8 Polarization: -28.60 SS G_CDS: -0.32 Total: -28.92 kcal Atomic # 9 Polarization: -7.26 SS G_CDS: 0.77 Total: -6.48 kcal Atomic # 14 Polarization: 41.71 SS G_CDS: 2.03 Total: 43.73 kcal Total: -60.57 1.81 -58.76 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255165131.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.241 kcal (2) G-P(sol) polarization free energy of solvation -60.567 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -148.808 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.810 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.757 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.998 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds