Wall clock time and date at job start Tue Mar 31 2020 11:36:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53000 * 109.47146 * 2 1 4 4 H 1.09002 * 109.47446 * 53.71795 * 3 2 1 5 5 C 1.50696 * 109.47341 * 173.72628 * 3 2 1 6 6 H 1.07999 * 120.00110 * 121.69577 * 5 3 2 7 7 C 1.37879 * 120.00017 * 301.68674 * 5 3 2 8 8 N 1.31514 * 120.00481 * 164.48402 * 7 5 3 9 9 Si 1.86804 * 119.99691 * 344.49078 * 7 5 3 10 10 H 1.48507 * 109.46972 * 264.83607 * 9 7 5 11 11 H 1.48497 * 109.47435 * 24.83672 * 9 7 5 12 12 H 1.48495 * 109.47333 * 144.84204 * 9 7 5 13 13 N 1.46902 * 109.46709 * 293.72110 * 3 2 1 14 14 C 1.48176 * 111.00124 * 194.43205 * 13 3 2 15 15 C 1.53996 * 104.16657 * 214.33554 * 14 13 3 16 16 H 1.08996 * 109.60862 * 281.84534 * 15 14 13 17 17 C 1.50992 * 112.52148 * 159.60241 * 15 14 13 18 18 N 1.46661 * 111.71243 * 295.27662 * 17 15 14 19 19 C 1.38406 * 110.99902 * 176.12203 * 18 17 15 20 20 N 1.32499 * 119.21693 * 359.72581 * 19 18 17 21 21 C 1.32276 * 120.73654 * 179.71776 * 20 19 18 22 22 C 1.38599 * 119.20103 * 0.54983 * 21 20 19 23 23 C 1.38607 * 118.55922 * 359.72743 * 22 21 20 24 24 N 1.32273 * 119.19623 * 0.02562 * 23 22 21 25 25 C 1.47174 * 109.78377 * 299.21161 * 18 17 15 26 26 C 1.52673 * 108.46605 * 65.77691 * 25 18 17 27 27 C 1.51841 * 110.47747 * 298.60846 * 26 25 18 28 28 H 1.09002 * 111.89650 * 284.93005 * 27 26 25 29 29 C 1.47564 * 111.00066 * 73.59062 * 13 3 2 30 30 H 1.08995 * 109.47400 * 68.81152 * 1 2 3 31 31 H 1.09007 * 109.46810 * 188.81195 * 1 2 3 32 32 H 1.08999 * 109.47416 * 308.81000 * 1 2 3 33 33 H 1.09000 * 109.47652 * 239.99927 * 2 1 3 34 34 H 1.09003 * 109.47236 * 119.99488 * 2 1 3 35 35 H 0.96999 * 120.00216 * 180.02562 * 8 7 5 36 36 H 1.09006 * 110.49096 * 333.00532 * 14 13 3 37 37 H 1.08996 * 110.49348 * 95.66034 * 14 13 3 38 38 H 1.08996 * 109.02838 * 55.84684 * 17 15 14 39 39 H 1.08991 * 109.03229 * 174.70084 * 17 15 14 40 40 H 1.08002 * 120.39412 * 180.29863 * 21 20 19 41 41 H 1.07996 * 120.72179 * 179.74792 * 22 21 20 42 42 H 1.07997 * 120.40318 * 179.97438 * 23 22 21 43 43 H 1.08998 * 109.64210 * 185.47080 * 25 18 17 44 44 H 1.09001 * 109.63935 * 306.08982 * 25 18 17 45 45 H 1.09004 * 109.22803 * 58.85697 * 26 25 18 46 46 H 1.08994 * 109.23530 * 178.23065 * 26 25 18 47 47 H 1.09003 * 109.92857 * 240.91385 * 29 13 3 48 48 H 1.09004 * 109.92937 * 2.24330 * 29 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5877 1.9878 0.8284 5 6 3.5389 1.4454 0.1553 6 1 4.1589 1.9085 -0.5980 7 6 4.1188 0.8569 1.2591 8 7 5.4053 0.5842 1.2593 9 14 3.0769 0.4469 2.7544 10 1 3.1697 1.5531 3.7408 11 1 1.6620 0.2716 2.3390 12 1 3.5707 -0.8098 3.3723 13 7 1.6778 2.0898 -1.2680 14 6 2.4349 3.3496 -1.4564 15 6 1.4486 4.2756 -2.1919 16 1 1.4108 4.0055 -3.2472 17 6 1.8131 5.7345 -2.0549 18 7 1.7174 6.1893 -0.6639 19 6 2.1371 7.5025 -0.5414 20 7 2.5538 8.1514 -1.6188 21 6 2.9562 9.4088 -1.5372 22 6 2.9489 10.0425 -0.3046 23 6 2.5122 9.3326 0.8028 24 7 2.1182 8.0790 0.6514 25 6 0.3360 6.0300 -0.1816 26 6 0.0095 4.5394 -0.1336 27 6 0.1045 3.9298 -1.5211 28 1 -0.7483 4.2009 -2.1435 29 6 0.2353 2.3976 -1.3116 30 1 -0.3634 0.3714 -0.9581 31 1 -0.3633 -1.0156 0.1574 32 1 -0.3634 0.6441 0.8008 33 1 1.8934 -0.5138 -0.8899 34 1 1.8933 -0.5138 0.8900 35 1 5.8132 0.1698 2.0358 36 1 2.7120 3.7760 -0.4922 37 1 3.3212 3.1746 -2.0661 38 1 2.8343 5.8802 -2.4070 39 1 1.1380 6.3288 -2.6704 40 1 3.2903 9.9340 -2.4199 41 1 3.2761 11.0673 -0.2091 42 1 2.4945 9.7971 1.7777 43 1 0.2450 6.4572 0.8170 44 1 -0.3501 6.5334 -0.8627 45 1 0.7153 4.0384 0.5289 46 1 -1.0011 4.4054 0.2521 47 1 -0.2327 1.8679 -2.1414 48 1 -0.2346 2.1097 -0.3712 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255170243.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:36:35 Heat of formation + Delta-G solvation = 93.355519 kcal Electronic energy + Delta-G solvation = -27955.319811 eV Core-core repulsion = 24432.459703 eV Total energy + Delta-G solvation = -3522.860108 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.196 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.38549 -39.93036 -37.22599 -34.49481 -33.85839 -32.18630 -32.01813 -31.05061 -29.92101 -28.19564 -26.45445 -25.06130 -24.34280 -23.15020 -22.55526 -22.09088 -20.45332 -19.41786 -18.69795 -18.06577 -17.40494 -16.59980 -15.97735 -15.50436 -15.39502 -15.02111 -14.65616 -14.45365 -13.92065 -13.78356 -13.63842 -13.36688 -13.09709 -13.03297 -12.65479 -12.30103 -12.29306 -12.05192 -11.74007 -11.41026 -11.31846 -11.18940 -11.11434 -10.93253 -10.76197 -10.54785 -10.35811 -10.26320 -10.01397 -9.96265 -9.71491 -9.70031 -9.23762 -9.14061 -8.88367 -8.38581 -8.37058 -7.20412 -6.03110 -3.95816 0.85901 1.02398 3.13373 3.32386 3.41885 3.45163 3.67128 4.05704 4.47773 4.47998 4.61883 4.72686 4.79952 4.95310 5.01884 5.03121 5.08638 5.26989 5.28678 5.46253 5.53798 5.58372 5.59465 5.63845 5.82655 5.88707 5.92431 6.00014 6.02868 6.05709 6.12746 6.22531 6.26651 6.35323 6.40686 6.59201 6.66253 6.70547 6.74164 6.78844 6.81276 6.94551 7.00825 7.10234 7.23722 7.43232 7.71700 8.06716 8.09158 8.18489 8.71738 9.07529 9.63212 11.09798 Molecular weight = 316.20amu Principal moments of inertia in cm(-1) A = 0.015120 B = 0.004313 C = 0.003827 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1851.422302 B = 6490.462674 C = 7314.260443 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.118 4.118 3 C 0.191 3.809 4 H -0.007 1.007 5 C -0.514 4.514 6 H 0.080 0.920 7 C 0.077 3.923 8 N -0.892 5.892 9 Si 0.855 3.145 10 H -0.284 1.284 11 H -0.246 1.246 12 H -0.288 1.288 13 N -0.516 5.516 14 C 0.075 3.925 15 C -0.100 4.100 16 H 0.084 0.916 17 C 0.084 3.916 18 N -0.445 5.445 19 C 0.499 3.501 20 N -0.553 5.553 21 C 0.172 3.828 22 C -0.271 4.271 23 C 0.174 3.826 24 N -0.530 5.530 25 C 0.069 3.931 26 C -0.115 4.115 27 C -0.111 4.111 28 H 0.077 0.923 29 C 0.038 3.962 30 H 0.060 0.940 31 H 0.035 0.965 32 H 0.041 0.959 33 H 0.062 0.938 34 H 0.056 0.944 35 H 0.262 0.738 36 H 0.065 0.935 37 H 0.069 0.931 38 H 0.088 0.912 39 H 0.048 0.952 40 H 0.166 0.834 41 H 0.144 0.856 42 H 0.168 0.832 43 H 0.090 0.910 44 H 0.043 0.957 45 H 0.082 0.918 46 H 0.070 0.930 47 H 0.063 0.937 48 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.076 16.825 -4.775 20.702 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.156 4.156 3 C 0.083 3.917 4 H 0.011 0.989 5 C -0.552 4.552 6 H 0.098 0.902 7 C -0.125 4.125 8 N -0.530 5.530 9 Si 0.682 3.318 10 H -0.211 1.211 11 H -0.170 1.170 12 H -0.214 1.214 13 N -0.240 5.240 14 C -0.053 4.053 15 C -0.120 4.120 16 H 0.103 0.897 17 C -0.043 4.043 18 N -0.164 5.164 19 C 0.144 3.856 20 N -0.273 5.273 21 C 0.005 3.995 22 C -0.295 4.295 23 C 0.006 3.994 24 N -0.248 5.248 25 C -0.056 4.056 26 C -0.153 4.153 27 C -0.130 4.130 28 H 0.096 0.904 29 C -0.090 4.090 30 H 0.079 0.921 31 H 0.054 0.946 32 H 0.060 0.940 33 H 0.081 0.919 34 H 0.074 0.926 35 H 0.072 0.928 36 H 0.083 0.917 37 H 0.088 0.912 38 H 0.106 0.894 39 H 0.066 0.934 40 H 0.183 0.817 41 H 0.162 0.838 42 H 0.185 0.815 43 H 0.109 0.891 44 H 0.061 0.939 45 H 0.100 0.900 46 H 0.089 0.911 47 H 0.081 0.919 48 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -10.813 15.000 -4.854 19.117 hybrid contribution -0.474 1.604 1.337 2.141 sum -11.287 16.603 -3.517 20.382 Atomic orbital electron populations 1.22206 0.98828 0.99641 1.00926 1.21985 0.92610 0.99548 1.01423 1.19750 0.96366 0.90344 0.85269 0.98925 1.21022 0.89189 1.37382 1.07566 0.90197 1.24867 0.94684 0.94600 0.98386 1.69978 1.11384 1.41939 1.29710 0.87423 0.82722 0.77798 0.83817 1.21114 1.17012 1.21432 1.63647 1.01484 1.22400 1.36460 1.22658 0.95324 0.87516 0.99800 1.21767 0.95937 0.93442 1.00824 0.89741 1.21435 1.03163 0.94979 0.84712 1.58697 1.23317 1.11412 1.22931 1.21176 0.90650 0.89189 0.84628 1.68434 1.17059 1.09800 1.31994 1.23048 0.89524 0.89378 0.97554 1.22680 1.07867 1.03475 0.95467 1.23090 0.88504 0.88550 0.99282 1.68048 1.20297 1.11774 1.24725 1.22227 0.84069 0.98421 1.00920 1.21505 1.02064 0.93683 0.98027 1.22255 0.97353 0.97608 0.95808 0.90424 1.23481 0.92409 0.92262 1.00859 0.92123 0.94627 0.94027 0.91932 0.92580 0.92832 0.91652 0.91235 0.89378 0.93378 0.81711 0.83817 0.81525 0.89128 0.93901 0.89964 0.91111 0.91906 0.91919 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.87 8.33 37.15 0.31 -2.56 16 2 C -0.12 -2.61 4.71 -26.73 -0.13 -2.73 16 3 C 0.19 4.49 1.12 -68.86 -0.08 4.41 16 4 H -0.01 -0.16 6.31 -51.93 -0.33 -0.49 16 5 C -0.51 -14.43 8.23 -34.44 -0.28 -14.71 16 6 H 0.08 2.45 6.71 -52.49 -0.35 2.10 16 7 C 0.08 2.23 5.31 -17.82 -0.09 2.13 16 8 N -0.89 -27.53 13.96 55.43 0.77 -26.76 16 9 Si 0.86 21.44 25.66 -169.99 -4.36 17.08 16 10 H -0.28 -7.22 7.11 56.52 0.40 -6.82 16 11 H -0.25 -5.75 5.24 56.52 0.30 -5.45 16 12 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 13 N -0.52 -10.59 5.03 -224.30 -1.13 -11.71 16 14 C 0.07 1.48 4.24 -2.60 -0.01 1.47 16 15 C -0.10 -1.53 2.98 -90.51 -0.27 -1.80 16 16 H 0.08 1.22 8.14 -51.93 -0.42 0.79 16 17 C 0.08 1.24 4.01 -4.96 -0.02 1.22 16 18 N -0.45 -7.00 4.38 -176.76 -0.77 -7.78 16 19 C 0.50 7.60 7.14 -322.79 -2.30 5.30 16 20 N -0.55 -7.57 8.65 -13.93 -0.12 -7.69 16 21 C 0.17 1.74 11.30 -17.23 -0.19 1.54 16 22 C -0.27 -2.34 10.16 -39.31 -0.40 -2.74 16 23 C 0.17 1.82 11.30 -17.23 -0.19 1.63 16 24 N -0.53 -7.70 9.69 -13.93 -0.14 -7.83 16 25 C 0.07 0.96 5.36 -3.84 -0.02 0.94 16 26 C -0.12 -1.64 4.77 -27.49 -0.13 -1.78 16 27 C -0.11 -1.57 3.56 -89.44 -0.32 -1.89 16 28 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 29 C 0.04 0.63 4.12 -2.30 -0.01 0.62 16 30 H 0.06 1.00 5.36 -51.93 -0.28 0.73 16 31 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.04 0.73 7.35 -51.93 -0.38 0.35 16 33 H 0.06 1.43 8.14 -51.93 -0.42 1.00 16 34 H 0.06 1.32 4.13 -51.93 -0.21 1.10 16 35 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 36 H 0.07 1.48 6.63 -51.93 -0.34 1.13 16 37 H 0.07 1.47 7.70 -51.93 -0.40 1.07 16 38 H 0.09 1.37 7.72 -51.93 -0.40 0.97 16 39 H 0.05 0.65 7.99 -51.93 -0.41 0.24 16 40 H 0.17 1.07 8.06 -52.49 -0.42 0.65 16 41 H 0.14 0.74 8.06 -52.49 -0.42 0.32 16 42 H 0.17 1.17 8.06 -52.49 -0.42 0.75 16 43 H 0.09 1.26 7.53 -51.93 -0.39 0.87 16 44 H 0.04 0.54 8.08 -51.93 -0.42 0.12 16 45 H 0.08 1.46 6.64 -51.93 -0.34 1.12 16 46 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 47 H 0.06 0.98 7.51 -51.93 -0.39 0.59 16 48 H 0.06 1.06 4.48 -51.93 -0.23 0.82 16 LS Contribution 350.80 15.07 5.29 5.29 Total: -1.00 -32.73 350.80 -12.12 -44.85 By element: Atomic # 1 Polarization: 11.04 SS G_CDS: -7.52 Total: 3.52 kcal Atomic # 6 Polarization: -4.82 SS G_CDS: -4.15 Total: -8.97 kcal Atomic # 7 Polarization: -60.39 SS G_CDS: -1.38 Total: -61.77 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -4.36 Total: 17.08 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -32.73 -12.12 -44.85 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255170243.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.207 kcal (2) G-P(sol) polarization free energy of solvation -32.732 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 105.475 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.119 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.852 kcal (6) G-S(sol) free energy of system = (1) + (5) 93.356 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds