Wall clock time and date at job start Tue Mar 31 2020 11:36:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53000 * 109.47146 * 2 1 4 4 H 1.09002 * 109.47446 * 53.71795 * 3 2 1 5 5 C 1.50696 * 109.47341 * 173.72628 * 3 2 1 6 6 H 1.07999 * 120.00110 * 121.69577 * 5 3 2 7 7 C 1.37879 * 120.00017 * 301.68674 * 5 3 2 8 8 N 1.31514 * 120.00481 * 164.48402 * 7 5 3 9 9 Si 1.86804 * 119.99691 * 344.49078 * 7 5 3 10 10 H 1.48507 * 109.46972 * 264.83607 * 9 7 5 11 11 H 1.48497 * 109.47435 * 24.83672 * 9 7 5 12 12 H 1.48495 * 109.47333 * 144.84204 * 9 7 5 13 13 N 1.46902 * 109.46709 * 293.72110 * 3 2 1 14 14 C 1.48176 * 111.00124 * 194.43205 * 13 3 2 15 15 C 1.53996 * 104.16657 * 214.33554 * 14 13 3 16 16 H 1.08996 * 109.60862 * 281.84534 * 15 14 13 17 17 C 1.50992 * 112.52148 * 159.60241 * 15 14 13 18 18 N 1.46661 * 111.71243 * 295.27662 * 17 15 14 19 19 C 1.38406 * 110.99902 * 176.12203 * 18 17 15 20 20 N 1.32499 * 119.21693 * 359.72581 * 19 18 17 21 21 C 1.32276 * 120.73654 * 179.71776 * 20 19 18 22 22 C 1.38599 * 119.20103 * 0.54983 * 21 20 19 23 23 C 1.38607 * 118.55922 * 359.72743 * 22 21 20 24 24 N 1.32273 * 119.19623 * 0.02562 * 23 22 21 25 25 C 1.47174 * 109.78377 * 299.21161 * 18 17 15 26 26 C 1.52673 * 108.46605 * 65.77691 * 25 18 17 27 27 C 1.51841 * 110.47747 * 298.60846 * 26 25 18 28 28 H 1.09002 * 111.89650 * 284.93005 * 27 26 25 29 29 C 1.47564 * 111.00066 * 73.59062 * 13 3 2 30 30 H 1.08995 * 109.47400 * 68.81152 * 1 2 3 31 31 H 1.09007 * 109.46810 * 188.81195 * 1 2 3 32 32 H 1.08999 * 109.47416 * 308.81000 * 1 2 3 33 33 H 1.09000 * 109.47652 * 239.99927 * 2 1 3 34 34 H 1.09003 * 109.47236 * 119.99488 * 2 1 3 35 35 H 0.96999 * 120.00216 * 180.02562 * 8 7 5 36 36 H 1.09006 * 110.49096 * 333.00532 * 14 13 3 37 37 H 1.08996 * 110.49348 * 95.66034 * 14 13 3 38 38 H 1.08996 * 109.02838 * 55.84684 * 17 15 14 39 39 H 1.08991 * 109.03229 * 174.70084 * 17 15 14 40 40 H 1.08002 * 120.39412 * 180.29863 * 21 20 19 41 41 H 1.07996 * 120.72179 * 179.74792 * 22 21 20 42 42 H 1.07997 * 120.40318 * 179.97438 * 23 22 21 43 43 H 1.08998 * 109.64210 * 185.47080 * 25 18 17 44 44 H 1.09001 * 109.63935 * 306.08982 * 25 18 17 45 45 H 1.09004 * 109.22803 * 58.85697 * 26 25 18 46 46 H 1.08994 * 109.23530 * 178.23065 * 26 25 18 47 47 H 1.09003 * 109.92857 * 240.91385 * 29 13 3 48 48 H 1.09004 * 109.92937 * 2.24330 * 29 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5877 1.9878 0.8284 5 6 3.5389 1.4454 0.1553 6 1 4.1589 1.9085 -0.5980 7 6 4.1188 0.8569 1.2591 8 7 5.4053 0.5842 1.2593 9 14 3.0769 0.4469 2.7544 10 1 3.1697 1.5531 3.7408 11 1 1.6620 0.2716 2.3390 12 1 3.5707 -0.8098 3.3723 13 7 1.6778 2.0898 -1.2680 14 6 2.4349 3.3496 -1.4564 15 6 1.4486 4.2756 -2.1919 16 1 1.4108 4.0055 -3.2472 17 6 1.8131 5.7345 -2.0549 18 7 1.7174 6.1893 -0.6639 19 6 2.1371 7.5025 -0.5414 20 7 2.5538 8.1514 -1.6188 21 6 2.9562 9.4088 -1.5372 22 6 2.9489 10.0425 -0.3046 23 6 2.5122 9.3326 0.8028 24 7 2.1182 8.0790 0.6514 25 6 0.3360 6.0300 -0.1816 26 6 0.0095 4.5394 -0.1336 27 6 0.1045 3.9298 -1.5211 28 1 -0.7483 4.2009 -2.1435 29 6 0.2353 2.3976 -1.3116 30 1 -0.3634 0.3714 -0.9581 31 1 -0.3633 -1.0156 0.1574 32 1 -0.3634 0.6441 0.8008 33 1 1.8934 -0.5138 -0.8899 34 1 1.8933 -0.5138 0.8900 35 1 5.8132 0.1698 2.0358 36 1 2.7120 3.7760 -0.4922 37 1 3.3212 3.1746 -2.0661 38 1 2.8343 5.8802 -2.4070 39 1 1.1380 6.3288 -2.6704 40 1 3.2903 9.9340 -2.4199 41 1 3.2761 11.0673 -0.2091 42 1 2.4945 9.7971 1.7777 43 1 0.2450 6.4572 0.8170 44 1 -0.3501 6.5334 -0.8627 45 1 0.7153 4.0384 0.5289 46 1 -1.0011 4.4054 0.2521 47 1 -0.2327 1.8679 -2.1414 48 1 -0.2346 2.1097 -0.3712 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255170243.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:36:34 Heat of formation + Delta-G solvation = 71.032448 kcal Electronic energy + Delta-G solvation = -27956.287812 eV Core-core repulsion = 24432.459703 eV Total energy + Delta-G solvation = -3523.828109 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.196 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.36420 -41.16311 -38.56896 -36.01447 -34.75996 -34.15455 -33.33951 -32.17022 -31.25729 -29.71837 -28.00755 -26.24681 -25.37835 -24.69552 -23.84444 -23.19856 -21.93067 -21.17228 -19.99803 -19.08838 -18.61619 -18.27978 -17.19655 -16.87043 -16.49817 -16.32358 -15.82643 -15.74402 -15.29318 -15.11528 -14.87071 -14.65745 -14.42058 -14.31212 -14.25541 -13.95082 -13.80380 -13.39027 -13.26665 -12.93994 -12.82378 -12.61987 -12.52736 -12.22624 -12.01488 -11.89345 -11.85983 -11.68088 -11.41412 -11.24291 -11.16783 -11.04474 -11.00542 -10.78009 -10.56822 -10.14234 -9.35123 -8.86850 -8.30005 -6.26383 0.00642 0.21605 1.29254 1.34461 1.43270 2.17645 2.33862 2.79446 3.03119 3.23509 3.34766 3.51533 3.64698 3.81416 3.82641 3.87856 4.13977 4.26139 4.31052 4.34920 4.40344 4.43588 4.46235 4.47912 4.53090 4.56020 4.62660 4.66991 4.77456 4.87412 4.88664 4.92352 5.00193 5.04309 5.13487 5.19736 5.22810 5.26625 5.28763 5.37690 5.42274 5.50007 5.55418 5.69570 5.80167 5.84249 6.09838 6.32252 6.38049 6.75880 6.81056 7.18537 7.36604 8.87015 Molecular weight = 316.20amu Principal moments of inertia in cm(-1) A = 0.015120 B = 0.004313 C = 0.003827 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1851.422302 B = 6490.462674 C = 7314.260443 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.118 4.118 3 C 0.199 3.801 4 H -0.014 1.014 5 C -0.516 4.516 6 H 0.034 0.966 7 C 0.018 3.982 8 N -0.944 5.944 9 Si 0.919 3.081 10 H -0.288 1.288 11 H -0.215 1.215 12 H -0.284 1.284 13 N -0.528 5.528 14 C 0.081 3.919 15 C -0.089 4.089 16 H 0.099 0.901 17 C 0.096 3.904 18 N -0.474 5.474 19 C 0.474 3.526 20 N -0.575 5.575 21 C 0.159 3.841 22 C -0.249 4.249 23 C 0.158 3.842 24 N -0.565 5.565 25 C 0.076 3.924 26 C -0.111 4.111 27 C -0.097 4.097 28 H 0.118 0.882 29 C 0.035 3.965 30 H 0.077 0.923 31 H 0.056 0.944 32 H 0.048 0.952 33 H 0.048 0.952 34 H 0.042 0.958 35 H 0.263 0.737 36 H 0.027 0.973 37 H 0.037 0.963 38 H 0.068 0.932 39 H 0.066 0.934 40 H 0.200 0.800 41 H 0.186 0.814 42 H 0.198 0.802 43 H 0.083 0.917 44 H 0.062 0.938 45 H 0.039 0.961 46 H 0.099 0.901 47 H 0.084 0.916 48 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.631 18.565 -5.090 24.179 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.157 4.157 3 C 0.091 3.909 4 H 0.003 0.997 5 C -0.554 4.554 6 H 0.052 0.948 7 C -0.179 4.179 8 N -0.584 5.584 9 Si 0.743 3.257 10 H -0.215 1.215 11 H -0.137 1.137 12 H -0.210 1.210 13 N -0.252 5.252 14 C -0.047 4.047 15 C -0.108 4.108 16 H 0.117 0.883 17 C -0.031 4.031 18 N -0.193 5.193 19 C 0.118 3.882 20 N -0.295 5.295 21 C -0.007 4.007 22 C -0.272 4.272 23 C -0.008 4.008 24 N -0.284 5.284 25 C -0.049 4.049 26 C -0.148 4.148 27 C -0.116 4.116 28 H 0.136 0.864 29 C -0.092 4.092 30 H 0.096 0.904 31 H 0.075 0.925 32 H 0.067 0.933 33 H 0.067 0.933 34 H 0.060 0.940 35 H 0.072 0.928 36 H 0.046 0.954 37 H 0.055 0.945 38 H 0.086 0.914 39 H 0.084 0.916 40 H 0.217 0.783 41 H 0.204 0.796 42 H 0.215 0.785 43 H 0.101 0.899 44 H 0.080 0.920 45 H 0.058 0.942 46 H 0.117 0.883 47 H 0.102 0.898 48 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -14.391 16.770 -5.184 22.698 hybrid contribution 0.790 1.230 1.360 1.997 sum -13.600 18.000 -3.824 22.882 Atomic orbital electron populations 1.22112 0.94868 1.01411 1.02273 1.21882 0.96125 0.97546 1.00101 1.19539 0.92960 0.91843 0.86577 0.99653 1.21327 0.91825 1.35927 1.06294 0.94779 1.25722 0.95858 0.94836 1.01527 1.70124 1.13583 1.43975 1.30767 0.86397 0.82670 0.77275 0.79327 1.21541 1.13711 1.21021 1.63559 1.04389 1.22802 1.34490 1.22403 0.95768 0.88518 0.97964 1.21689 0.95279 0.92888 1.00990 0.88253 1.21251 1.02376 0.94443 0.85014 1.58717 1.24536 1.12761 1.23295 1.21194 0.92204 0.89377 0.85429 1.68416 1.17838 1.11477 1.31801 1.23767 0.88842 0.88447 0.99639 1.23117 1.05160 1.04902 0.94062 1.23752 0.88041 0.87598 1.01432 1.68018 1.21803 1.13785 1.24805 1.22170 0.83802 0.97997 1.00963 1.21468 1.02385 0.93626 0.97354 1.22273 0.97601 0.95581 0.96155 0.86398 1.23593 0.89369 0.94418 1.01869 0.90377 0.92454 0.93335 0.93278 0.94001 0.92800 0.95433 0.94451 0.91394 0.91601 0.78295 0.79619 0.78543 0.89894 0.92017 0.94184 0.88302 0.89766 0.91571 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.90 8.33 71.98 0.60 -4.30 16 2 C -0.12 -5.16 4.71 30.59 0.14 -5.01 16 3 C 0.20 9.58 1.12 44.17 0.05 9.62 16 4 H -0.01 -0.69 6.31 -2.39 -0.02 -0.70 16 5 C -0.52 -30.74 8.23 25.60 0.21 -30.53 16 6 H 0.03 2.28 6.71 -2.91 -0.02 2.26 16 7 C 0.02 1.09 5.31 84.66 0.45 1.54 16 8 N -0.94 -61.46 13.96 21.45 0.30 -61.16 16 9 Si 0.92 45.44 25.66 68.60 1.76 47.20 16 10 H -0.29 -14.36 7.11 99.48 0.71 -13.65 16 11 H -0.21 -9.45 5.24 99.48 0.52 -8.93 16 12 H -0.28 -13.81 7.11 99.48 0.71 -13.10 16 13 N -0.53 -21.96 5.03 -863.55 -4.34 -26.31 16 14 C 0.08 3.42 4.24 86.39 0.37 3.79 16 15 C -0.09 -2.69 2.98 -10.72 -0.03 -2.72 16 16 H 0.10 2.71 8.14 -2.39 -0.02 2.69 16 17 C 0.10 2.83 4.01 85.70 0.34 3.18 16 18 N -0.47 -15.19 4.38 -713.15 -3.12 -18.31 16 19 C 0.47 14.55 7.14 261.48 1.87 16.41 16 20 N -0.57 -15.44 8.65 -197.98 -1.71 -17.15 16 21 C 0.16 2.88 11.30 84.71 0.96 3.83 16 22 C -0.25 -3.60 10.16 22.44 0.23 -3.37 16 23 C 0.16 3.06 11.30 84.71 0.96 4.02 16 24 N -0.56 -16.38 9.69 -197.98 -1.92 -18.30 16 25 C 0.08 2.03 5.36 86.14 0.46 2.50 16 26 C -0.11 -2.99 4.77 30.10 0.14 -2.84 16 27 C -0.10 -2.50 3.56 -10.03 -0.04 -2.53 16 28 H 0.12 2.23 8.14 -2.39 -0.02 2.21 16 29 C 0.03 1.07 4.12 86.93 0.36 1.43 16 30 H 0.08 2.28 5.36 -2.39 -0.01 2.27 16 31 H 0.06 1.65 8.14 -2.38 -0.02 1.63 16 32 H 0.05 1.53 7.35 -2.39 -0.02 1.51 16 33 H 0.05 2.23 8.14 -2.39 -0.02 2.21 16 34 H 0.04 1.92 4.13 -2.39 -0.01 1.91 16 35 H 0.26 16.06 8.31 -92.71 -0.77 15.29 16 36 H 0.03 1.35 6.63 -2.38 -0.02 1.33 16 37 H 0.04 1.74 7.70 -2.39 -0.02 1.72 16 38 H 0.07 2.23 7.72 -2.39 -0.02 2.21 16 39 H 0.07 1.69 7.99 -2.39 -0.02 1.67 16 40 H 0.20 1.98 8.06 -2.91 -0.02 1.96 16 41 H 0.19 1.04 8.06 -2.91 -0.02 1.02 16 42 H 0.20 2.32 8.06 -2.91 -0.02 2.29 16 43 H 0.08 2.31 7.53 -2.39 -0.02 2.29 16 44 H 0.06 1.39 8.08 -2.39 -0.02 1.38 16 45 H 0.04 1.43 6.64 -2.39 -0.02 1.41 16 46 H 0.10 2.09 8.14 -2.39 -0.02 2.07 16 47 H 0.08 2.28 7.51 -2.39 -0.02 2.26 16 48 H 0.07 2.02 4.48 -2.38 -0.01 2.01 16 Total: -1.00 -78.58 350.80 -1.20 -79.78 By element: Atomic # 1 Polarization: 18.46 SS G_CDS: 0.77 Total: 19.23 kcal Atomic # 6 Polarization: -12.05 SS G_CDS: 7.07 Total: -4.98 kcal Atomic # 7 Polarization: -130.43 SS G_CDS: -10.80 Total: -141.23 kcal Atomic # 14 Polarization: 45.44 SS G_CDS: 1.76 Total: 47.20 kcal Total: -78.58 -1.20 -79.78 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255170243.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 150.814 kcal (2) G-P(sol) polarization free energy of solvation -78.583 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.231 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.199 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.781 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.032 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds