Wall clock time and date at job start Tue Mar 31 2020 11:36:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 109.47440 * 2 1 4 4 H 1.08998 * 109.47538 * 178.38280 * 3 2 1 5 5 C 1.50707 * 109.47046 * 58.38430 * 3 2 1 6 6 H 1.08004 * 119.99585 * 240.00165 * 5 3 2 7 7 C 1.37874 * 119.99855 * 60.00004 * 5 3 2 8 8 N 1.31509 * 120.00177 * 0.02562 * 7 5 3 9 9 Si 1.86801 * 119.99937 * 180.02562 * 7 5 3 10 10 H 1.48501 * 109.46925 * 90.00098 * 9 7 5 11 11 H 1.48494 * 109.47113 * 210.00154 * 9 7 5 12 12 H 1.48505 * 109.47202 * 330.00313 * 9 7 5 13 13 N 1.46901 * 109.47167 * 298.38589 * 3 2 1 14 14 C 1.48480 * 110.99831 * 296.45053 * 13 3 2 15 15 C 1.55354 * 105.18807 * 203.84498 * 14 13 3 16 16 H 1.09004 * 109.10311 * 260.54143 * 15 14 13 17 17 C 1.51605 * 107.66100 * 141.65626 * 15 14 13 18 18 N 1.46044 * 113.05228 * 211.20708 * 17 15 14 19 19 C 1.38416 * 110.99746 * 182.82187 * 18 17 15 20 20 N 1.32487 * 119.21536 * 113.73351 * 19 18 17 21 21 C 1.32280 * 120.73851 * 179.71941 * 20 19 18 22 22 C 1.38600 * 119.19362 * 0.53948 * 21 20 19 23 23 C 1.38600 * 118.56334 * 359.73324 * 22 21 20 24 24 N 1.32276 * 119.19730 * 0.02562 * 23 22 21 25 25 C 1.47373 * 109.51221 * 59.91416 * 18 17 15 26 26 C 1.52589 * 107.44669 * 289.19683 * 25 18 17 27 27 C 1.49714 * 112.86987 * 53.98018 * 26 25 18 28 28 H 1.08997 * 106.39570 * 212.75439 * 27 26 25 29 29 C 1.48970 * 111.00023 * 180.86415 * 13 3 2 30 30 H 1.09000 * 109.46762 * 54.41754 * 1 2 3 31 31 H 1.08993 * 109.46977 * 174.42519 * 1 2 3 32 32 H 1.09005 * 109.46514 * 294.42560 * 1 2 3 33 33 H 1.09000 * 109.47295 * 120.00309 * 2 1 3 34 34 H 1.08999 * 109.46972 * 240.00477 * 2 1 3 35 35 H 0.96993 * 120.00294 * 180.02562 * 8 7 5 36 36 H 1.09006 * 110.30088 * 322.76667 * 14 13 3 37 37 H 1.08999 * 110.30272 * 84.91472 * 14 13 3 38 38 H 1.08999 * 108.76893 * 90.27918 * 17 15 14 39 39 H 1.08998 * 108.76454 * 332.12895 * 17 15 14 40 40 H 1.08004 * 120.40072 * 180.30178 * 21 20 19 41 41 H 1.08002 * 120.71805 * 179.75592 * 22 21 20 42 42 H 1.07994 * 120.40528 * 179.97438 * 23 22 21 43 43 H 1.09001 * 109.85715 * 169.71456 * 25 18 17 44 44 H 1.09002 * 109.86314 * 48.68816 * 25 18 17 45 45 H 1.09000 * 108.80741 * 293.10497 * 26 25 18 46 46 H 1.09000 * 108.80326 * 174.84890 * 26 25 18 47 47 H 1.09012 * 110.66762 * 278.46791 * 29 13 3 48 48 H 1.08996 * 110.67296 * 41.44363 * 29 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 3.1297 1.4426 0.0290 5 6 1.5053 2.1644 1.2100 6 1 0.8874 3.0415 1.0861 7 6 1.8049 1.7051 2.4750 8 7 2.5577 0.6374 2.6258 9 14 1.1415 2.5995 3.9748 10 1 -0.1769 2.0276 4.3492 11 1 2.0898 2.4394 5.1062 12 1 0.9840 4.0425 3.6612 13 7 1.5826 2.1236 -1.2185 14 6 2.1599 1.4901 -2.4309 15 6 2.1316 2.5967 -3.5210 16 1 1.2667 2.4403 -4.1657 17 6 3.4035 2.4715 -4.3366 18 7 3.8766 3.7509 -4.8582 19 6 5.0014 3.5798 -5.6464 20 7 4.9275 3.8386 -6.9437 21 6 5.9854 3.6907 -7.7240 22 6 7.1769 3.2488 -7.1708 23 6 7.2177 2.9819 -5.8114 24 7 6.1248 3.1553 -5.0867 25 6 4.1513 4.6680 -3.7378 26 6 2.8081 5.0697 -3.1355 27 6 1.9662 3.8921 -2.7536 28 1 0.9297 4.1915 -2.9090 29 6 2.0785 3.5276 -1.2635 30 1 -0.3633 0.5980 -0.8358 31 1 -0.3633 -1.0227 -0.0998 32 1 -0.3632 0.4250 0.9358 33 1 1.8934 -0.5139 0.8899 34 1 1.8933 -0.5138 -0.8900 35 1 2.7682 0.3141 3.5157 36 1 3.1854 1.1734 -2.2402 37 1 1.5518 0.6398 -2.7393 38 1 3.2185 1.7982 -5.1736 39 1 4.1821 2.0396 -3.7078 40 1 5.9203 3.9080 -8.7799 41 1 8.0547 3.1156 -7.7858 42 1 8.1305 2.6357 -5.3495 43 1 4.6729 5.5528 -4.1029 44 1 4.7581 4.1631 -2.9862 45 1 2.2623 5.6705 -3.8630 46 1 2.9883 5.6754 -2.2474 47 1 1.4463 4.1786 -0.6593 48 1 3.1144 3.5807 -0.9286 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255170244.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:36:37 Heat of formation + Delta-G solvation = 78.240988 kcal Electronic energy + Delta-G solvation = -27338.781650 eV Core-core repulsion = 23815.266127 eV Total energy + Delta-G solvation = -3523.515523 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.196 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.45471 -39.70137 -37.07579 -34.58460 -33.92197 -32.59426 -31.53620 -31.16131 -29.80466 -27.22642 -26.46898 -24.85910 -24.41001 -23.73596 -22.63530 -21.94289 -21.21715 -18.98661 -18.34965 -17.74699 -17.34356 -16.27003 -16.00762 -15.78601 -15.56678 -15.04937 -14.60539 -14.46619 -14.04643 -13.85325 -13.70261 -13.41926 -12.94890 -12.80154 -12.48241 -12.38621 -11.93990 -11.73449 -11.60981 -11.30156 -11.19372 -11.07371 -10.94793 -10.85294 -10.58271 -10.40668 -10.34620 -10.06361 -9.99618 -9.86817 -9.68593 -9.60797 -9.58444 -9.28052 -8.77218 -8.61464 -8.38502 -7.25554 -5.97531 -4.00628 0.57820 0.85665 3.07860 3.32349 3.39013 3.42017 3.46095 3.98147 4.31217 4.43234 4.50376 4.74692 4.80980 4.82585 4.88838 5.04336 5.24963 5.28286 5.34539 5.41799 5.44838 5.51751 5.68029 5.72462 5.79963 5.92043 5.94916 6.09280 6.21110 6.25494 6.41178 6.44808 6.51863 6.59543 6.61538 6.66259 6.74230 6.76007 6.82429 6.86125 7.13957 7.17776 7.29010 7.44228 7.64166 7.74946 7.86917 7.92302 8.12594 8.36604 8.58817 9.04504 9.63178 11.09271 Molecular weight = 316.20amu Principal moments of inertia in cm(-1) A = 0.021796 B = 0.003127 C = 0.003103 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1284.314747 B = 8952.083216 C = 9022.357894 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.108 4.108 3 C 0.208 3.792 4 H -0.002 1.002 5 C -0.495 4.495 6 H 0.061 0.939 7 C 0.060 3.940 8 N -0.893 5.893 9 Si 0.892 3.108 10 H -0.281 1.281 11 H -0.289 1.289 12 H -0.275 1.275 13 N -0.501 5.501 14 C 0.037 3.963 15 C -0.074 4.074 16 H 0.078 0.922 17 C 0.075 3.925 18 N -0.467 5.467 19 C 0.491 3.509 20 N -0.495 5.495 21 C 0.155 3.845 22 C -0.241 4.241 23 C 0.159 3.841 24 N -0.540 5.540 25 C 0.068 3.932 26 C -0.096 4.096 27 C -0.087 4.087 28 H 0.065 0.935 29 C 0.056 3.944 30 H 0.046 0.954 31 H 0.013 0.987 32 H 0.054 0.946 33 H 0.089 0.911 34 H 0.011 0.989 35 H 0.259 0.741 36 H 0.035 0.965 37 H 0.070 0.930 38 H 0.068 0.932 39 H 0.050 0.950 40 H 0.171 0.829 41 H 0.148 0.852 42 H 0.167 0.833 43 H 0.069 0.931 44 H 0.057 0.943 45 H 0.067 0.933 46 H 0.073 0.927 47 H 0.078 0.922 48 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.035 5.433 -18.614 20.989 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.147 4.147 3 C 0.101 3.899 4 H 0.016 0.984 5 C -0.533 4.533 6 H 0.079 0.921 7 C -0.141 4.141 8 N -0.533 5.533 9 Si 0.720 3.280 10 H -0.207 1.207 11 H -0.215 1.215 12 H -0.200 1.200 13 N -0.226 5.226 14 C -0.092 4.092 15 C -0.093 4.093 16 H 0.096 0.904 17 C -0.052 4.052 18 N -0.192 5.192 19 C 0.136 3.864 20 N -0.210 5.210 21 C -0.013 4.013 22 C -0.263 4.263 23 C -0.009 4.009 24 N -0.258 5.258 25 C -0.059 4.059 26 C -0.134 4.134 27 C -0.106 4.106 28 H 0.083 0.917 29 C -0.072 4.072 30 H 0.065 0.935 31 H 0.032 0.968 32 H 0.073 0.927 33 H 0.107 0.893 34 H 0.030 0.970 35 H 0.069 0.931 36 H 0.053 0.947 37 H 0.089 0.911 38 H 0.086 0.914 39 H 0.068 0.932 40 H 0.188 0.812 41 H 0.166 0.834 42 H 0.184 0.816 43 H 0.088 0.912 44 H 0.075 0.925 45 H 0.086 0.914 46 H 0.092 0.908 47 H 0.096 0.904 48 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 6.289 5.601 -18.163 20.021 hybrid contribution 2.052 -0.153 0.784 2.202 sum 8.341 5.448 -17.379 20.032 Atomic orbital electron populations 1.21451 0.97258 0.97180 1.01835 1.21504 0.95289 0.98081 0.99782 1.19437 0.93051 0.91285 0.86098 0.98442 1.21033 1.30879 1.11798 0.89614 0.92116 1.24894 0.95266 0.95121 0.98838 1.69880 1.37632 1.23279 1.22470 0.86587 0.78690 0.80126 0.82553 1.20716 1.21451 1.19960 1.65515 1.53546 1.01157 1.02344 1.23426 0.97878 0.96352 0.91563 1.21160 0.96161 0.95928 0.96092 0.90352 1.21845 0.97316 0.87859 0.98215 1.59673 1.24576 1.13612 1.21359 1.21273 0.88024 0.88998 0.88126 1.68120 1.31549 1.16168 1.05191 1.23246 0.87363 0.90470 1.00200 1.22901 1.01120 1.04407 0.97837 1.23153 0.96214 0.90788 0.90765 1.68674 1.00905 1.14367 1.41850 1.22171 0.98071 0.94961 0.90728 1.20703 0.94594 0.97734 1.00396 1.20420 1.00544 0.93692 0.95971 0.91661 1.22963 0.98549 0.92487 0.93202 0.93474 0.96756 0.92687 0.89294 0.97044 0.93083 0.94720 0.91120 0.91350 0.93196 0.81238 0.83423 0.81601 0.91206 0.92452 0.91410 0.90844 0.90382 0.94647 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.69 9.46 37.16 0.35 -2.34 16 2 C -0.11 -2.61 5.32 -26.73 -0.14 -2.75 16 3 C 0.21 5.16 1.52 -68.86 -0.10 5.06 16 4 H 0.00 -0.05 7.98 -51.93 -0.41 -0.47 16 5 C -0.49 -13.24 6.87 -34.44 -0.24 -13.48 16 6 H 0.06 1.64 7.01 -52.48 -0.37 1.27 16 7 C 0.06 1.63 5.30 -17.82 -0.09 1.54 16 8 N -0.89 -25.30 11.34 55.43 0.63 -24.68 16 9 Si 0.89 21.29 29.54 -169.99 -5.02 16.27 16 10 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 11 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 12 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 13 N -0.50 -10.60 4.40 -222.83 -0.98 -11.58 16 14 C 0.04 0.68 4.97 -1.70 -0.01 0.67 16 15 C -0.07 -1.15 3.36 -90.85 -0.31 -1.45 16 16 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 17 C 0.07 1.11 4.68 -4.99 -0.02 1.09 16 18 N -0.47 -6.78 4.77 -176.78 -0.84 -7.62 16 19 C 0.49 6.85 6.23 -322.80 -2.01 4.84 16 20 N -0.50 -6.37 10.47 -13.93 -0.15 -6.51 16 21 C 0.15 1.35 11.30 -17.23 -0.19 1.15 16 22 C -0.24 -1.73 10.16 -39.31 -0.40 -2.13 16 23 C 0.16 1.47 11.30 -17.23 -0.19 1.28 16 24 N -0.54 -7.10 9.69 -13.93 -0.14 -7.23 16 25 C 0.07 0.93 5.27 -3.78 -0.02 0.91 16 26 C -0.10 -1.29 5.65 -28.57 -0.16 -1.45 16 27 C -0.09 -1.35 2.63 -92.59 -0.24 -1.60 16 28 H 0.06 1.02 8.06 -51.93 -0.42 0.60 16 29 C 0.06 1.08 5.06 -2.25 -0.01 1.07 16 30 H 0.05 1.02 7.49 -51.93 -0.39 0.63 16 31 H 0.01 0.28 8.14 -51.93 -0.42 -0.15 16 32 H 0.05 1.33 7.38 -51.93 -0.38 0.95 16 33 H 0.09 2.39 6.11 -51.93 -0.32 2.07 16 34 H 0.01 0.25 7.02 -51.93 -0.36 -0.12 16 35 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 36 H 0.03 0.67 6.87 -51.93 -0.36 0.31 16 37 H 0.07 1.27 7.79 -51.93 -0.40 0.86 16 38 H 0.07 0.98 8.10 -51.93 -0.42 0.56 16 39 H 0.05 0.81 6.82 -51.93 -0.35 0.46 16 40 H 0.17 0.85 8.06 -52.48 -0.42 0.43 16 41 H 0.15 0.53 8.06 -52.49 -0.42 0.11 16 42 H 0.17 1.03 8.06 -52.49 -0.42 0.61 16 43 H 0.07 0.90 8.03 -51.93 -0.42 0.48 16 44 H 0.06 0.87 7.98 -51.93 -0.41 0.46 16 45 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 46 H 0.07 0.93 7.82 -51.93 -0.41 0.53 16 47 H 0.08 1.55 7.46 -51.92 -0.39 1.16 16 48 H 0.04 0.72 7.99 -51.93 -0.41 0.31 16 LS Contribution 367.42 15.07 5.54 5.54 Total: -1.00 -30.63 367.42 -12.66 -43.30 By element: Atomic # 1 Polarization: 8.03 SS G_CDS: -7.90 Total: 0.13 kcal Atomic # 6 Polarization: -3.81 SS G_CDS: -3.80 Total: -7.61 kcal Atomic # 7 Polarization: -56.14 SS G_CDS: -1.47 Total: -57.62 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.27 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -30.63 -12.66 -43.30 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255170244.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.537 kcal (2) G-P(sol) polarization free energy of solvation -30.635 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.902 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.661 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.296 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.241 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds