Wall clock time and date at job start Tue Mar 31 2020 11:36:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 109.47440 * 2 1 4 4 H 1.08998 * 109.47538 * 178.38280 * 3 2 1 5 5 C 1.50707 * 109.47046 * 58.38430 * 3 2 1 6 6 H 1.08004 * 119.99585 * 240.00165 * 5 3 2 7 7 C 1.37874 * 119.99855 * 60.00004 * 5 3 2 8 8 N 1.31509 * 120.00177 * 0.02562 * 7 5 3 9 9 Si 1.86801 * 119.99937 * 180.02562 * 7 5 3 10 10 H 1.48501 * 109.46925 * 90.00098 * 9 7 5 11 11 H 1.48494 * 109.47113 * 210.00154 * 9 7 5 12 12 H 1.48505 * 109.47202 * 330.00313 * 9 7 5 13 13 N 1.46901 * 109.47167 * 298.38589 * 3 2 1 14 14 C 1.48480 * 110.99831 * 296.45053 * 13 3 2 15 15 C 1.55354 * 105.18807 * 203.84498 * 14 13 3 16 16 H 1.09004 * 109.10311 * 260.54143 * 15 14 13 17 17 C 1.51605 * 107.66100 * 141.65626 * 15 14 13 18 18 N 1.46044 * 113.05228 * 211.20708 * 17 15 14 19 19 C 1.38416 * 110.99746 * 182.82187 * 18 17 15 20 20 N 1.32487 * 119.21536 * 113.73351 * 19 18 17 21 21 C 1.32280 * 120.73851 * 179.71941 * 20 19 18 22 22 C 1.38600 * 119.19362 * 0.53948 * 21 20 19 23 23 C 1.38600 * 118.56334 * 359.73324 * 22 21 20 24 24 N 1.32276 * 119.19730 * 0.02562 * 23 22 21 25 25 C 1.47373 * 109.51221 * 59.91416 * 18 17 15 26 26 C 1.52589 * 107.44669 * 289.19683 * 25 18 17 27 27 C 1.49714 * 112.86987 * 53.98018 * 26 25 18 28 28 H 1.08997 * 106.39570 * 212.75439 * 27 26 25 29 29 C 1.48970 * 111.00023 * 180.86415 * 13 3 2 30 30 H 1.09000 * 109.46762 * 54.41754 * 1 2 3 31 31 H 1.08993 * 109.46977 * 174.42519 * 1 2 3 32 32 H 1.09005 * 109.46514 * 294.42560 * 1 2 3 33 33 H 1.09000 * 109.47295 * 120.00309 * 2 1 3 34 34 H 1.08999 * 109.46972 * 240.00477 * 2 1 3 35 35 H 0.96993 * 120.00294 * 180.02562 * 8 7 5 36 36 H 1.09006 * 110.30088 * 322.76667 * 14 13 3 37 37 H 1.08999 * 110.30272 * 84.91472 * 14 13 3 38 38 H 1.08999 * 108.76893 * 90.27918 * 17 15 14 39 39 H 1.08998 * 108.76454 * 332.12895 * 17 15 14 40 40 H 1.08004 * 120.40072 * 180.30178 * 21 20 19 41 41 H 1.08002 * 120.71805 * 179.75592 * 22 21 20 42 42 H 1.07994 * 120.40528 * 179.97438 * 23 22 21 43 43 H 1.09001 * 109.85715 * 169.71456 * 25 18 17 44 44 H 1.09002 * 109.86314 * 48.68816 * 25 18 17 45 45 H 1.09000 * 108.80741 * 293.10497 * 26 25 18 46 46 H 1.09000 * 108.80326 * 174.84890 * 26 25 18 47 47 H 1.09012 * 110.66762 * 278.46791 * 29 13 3 48 48 H 1.08996 * 110.67296 * 41.44363 * 29 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 3.1297 1.4426 0.0290 5 6 1.5053 2.1644 1.2100 6 1 0.8874 3.0415 1.0861 7 6 1.8049 1.7051 2.4750 8 7 2.5577 0.6374 2.6258 9 14 1.1415 2.5995 3.9748 10 1 -0.1769 2.0276 4.3492 11 1 2.0898 2.4394 5.1062 12 1 0.9840 4.0425 3.6612 13 7 1.5826 2.1236 -1.2185 14 6 2.1599 1.4901 -2.4309 15 6 2.1316 2.5967 -3.5210 16 1 1.2667 2.4403 -4.1657 17 6 3.4035 2.4715 -4.3366 18 7 3.8766 3.7509 -4.8582 19 6 5.0014 3.5798 -5.6464 20 7 4.9275 3.8386 -6.9437 21 6 5.9854 3.6907 -7.7240 22 6 7.1769 3.2488 -7.1708 23 6 7.2177 2.9819 -5.8114 24 7 6.1248 3.1553 -5.0867 25 6 4.1513 4.6680 -3.7378 26 6 2.8081 5.0697 -3.1355 27 6 1.9662 3.8921 -2.7536 28 1 0.9297 4.1915 -2.9090 29 6 2.0785 3.5276 -1.2635 30 1 -0.3633 0.5980 -0.8358 31 1 -0.3633 -1.0227 -0.0998 32 1 -0.3632 0.4250 0.9358 33 1 1.8934 -0.5139 0.8899 34 1 1.8933 -0.5138 -0.8900 35 1 2.7682 0.3141 3.5157 36 1 3.1854 1.1734 -2.2402 37 1 1.5518 0.6398 -2.7393 38 1 3.2185 1.7982 -5.1736 39 1 4.1821 2.0396 -3.7078 40 1 5.9203 3.9080 -8.7799 41 1 8.0547 3.1156 -7.7858 42 1 8.1305 2.6357 -5.3495 43 1 4.6729 5.5528 -4.1029 44 1 4.7581 4.1631 -2.9862 45 1 2.2623 5.6705 -3.8630 46 1 2.9883 5.6754 -2.2474 47 1 1.4463 4.1786 -0.6593 48 1 3.1144 3.5807 -0.9286 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255170244.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:36:37 Heat of formation + Delta-G solvation = 59.691695 kcal Electronic energy + Delta-G solvation = -27339.586008 eV Core-core repulsion = 23815.266127 eV Total energy + Delta-G solvation = -3524.319881 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.196 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.32947 -40.97140 -38.48027 -36.19094 -34.72156 -34.07626 -33.07493 -32.49667 -31.16444 -28.63562 -28.29238 -25.87235 -25.61143 -25.21473 -23.93172 -23.13880 -22.78234 -20.79653 -19.54774 -18.64584 -18.35604 -18.06949 -17.28955 -17.02172 -16.72277 -16.49433 -15.86318 -15.54896 -15.43698 -15.30322 -14.91107 -14.53018 -14.42566 -14.28026 -14.07567 -13.75815 -13.56617 -13.25824 -13.18702 -12.82760 -12.72142 -12.53949 -12.38800 -12.25492 -12.00715 -11.91652 -11.79518 -11.62811 -11.55815 -11.34211 -11.27868 -11.07263 -10.77791 -10.54475 -10.47521 -10.40360 -9.65550 -9.05756 -8.08145 -6.17959 -0.17973 0.15167 1.41484 1.42600 1.52043 2.13943 2.43399 2.68823 3.20102 3.24377 3.38911 3.49688 3.65289 3.74724 3.80794 3.92365 4.05278 4.17784 4.21234 4.22383 4.33418 4.43835 4.50116 4.54466 4.60253 4.65144 4.73416 4.75862 4.83807 4.85424 4.86974 4.94076 4.98811 5.08754 5.21375 5.26613 5.31009 5.38420 5.41783 5.43446 5.51914 5.64255 5.71213 5.75072 5.77170 5.85256 6.23661 6.27362 6.36916 6.65012 6.94029 7.11194 7.49700 8.97952 Molecular weight = 316.20amu Principal moments of inertia in cm(-1) A = 0.021796 B = 0.003127 C = 0.003103 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1284.314747 B = 8952.083216 C = 9022.357894 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.104 4.104 3 C 0.216 3.784 4 H -0.047 1.047 5 C -0.503 4.503 6 H 0.056 0.944 7 C 0.014 3.986 8 N -0.921 5.921 9 Si 0.952 3.048 10 H -0.276 1.276 11 H -0.287 1.287 12 H -0.268 1.268 13 N -0.506 5.506 14 C 0.039 3.961 15 C -0.064 4.064 16 H 0.095 0.905 17 C 0.087 3.913 18 N -0.469 5.469 19 C 0.463 3.537 20 N -0.521 5.521 21 C 0.146 3.854 22 C -0.214 4.214 23 C 0.141 3.859 24 N -0.572 5.572 25 C 0.074 3.926 26 C -0.091 4.091 27 C -0.076 4.076 28 H 0.074 0.926 29 C 0.058 3.942 30 H 0.054 0.946 31 H 0.037 0.963 32 H 0.032 0.968 33 H 0.059 0.941 34 H 0.024 0.976 35 H 0.259 0.741 36 H 0.016 0.984 37 H 0.078 0.922 38 H 0.073 0.927 39 H 0.027 0.973 40 H 0.208 0.792 41 H 0.193 0.807 42 H 0.192 0.808 43 H 0.079 0.921 44 H 0.034 0.966 45 H 0.085 0.915 46 H 0.079 0.921 47 H 0.070 0.930 48 H 0.013 0.987 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.126 6.365 -21.009 23.407 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.143 4.143 3 C 0.109 3.891 4 H -0.029 1.029 5 C -0.541 4.541 6 H 0.074 0.926 7 C -0.185 4.185 8 N -0.561 5.561 9 Si 0.778 3.222 10 H -0.202 1.202 11 H -0.213 1.213 12 H -0.193 1.193 13 N -0.230 5.230 14 C -0.090 4.090 15 C -0.083 4.083 16 H 0.113 0.887 17 C -0.041 4.041 18 N -0.193 5.193 19 C 0.107 3.893 20 N -0.237 5.237 21 C -0.020 4.020 22 C -0.235 4.235 23 C -0.026 4.026 24 N -0.291 5.291 25 C -0.053 4.053 26 C -0.129 4.129 27 C -0.095 4.095 28 H 0.092 0.908 29 C -0.071 4.071 30 H 0.073 0.927 31 H 0.056 0.944 32 H 0.051 0.949 33 H 0.078 0.922 34 H 0.042 0.958 35 H 0.068 0.932 36 H 0.035 0.965 37 H 0.096 0.904 38 H 0.091 0.909 39 H 0.045 0.955 40 H 0.224 0.776 41 H 0.210 0.790 42 H 0.209 0.791 43 H 0.097 0.903 44 H 0.052 0.948 45 H 0.104 0.896 46 H 0.098 0.902 47 H 0.088 0.912 48 H 0.031 0.969 Dipole moment (debyes) X Y Z Total from point charges 6.393 6.542 -20.586 22.527 hybrid contribution 2.179 -0.474 1.410 2.639 sum 8.573 6.068 -19.175 21.863 Atomic orbital electron populations 1.21301 0.95566 0.98654 1.00868 1.21383 0.96646 0.97336 0.98911 1.19191 0.90265 0.92164 0.87479 1.02924 1.21231 1.30595 1.11681 0.90609 0.92623 1.25626 0.95523 0.95811 1.01519 1.70020 1.38654 1.24503 1.22935 0.85638 0.78093 0.79259 0.79178 1.20174 1.21257 1.19268 1.65439 1.53558 1.02076 1.01894 1.23441 0.96719 0.97542 0.91285 1.21102 0.97275 0.94574 0.95348 0.88703 1.21622 0.96123 0.88596 0.97748 1.59629 1.25726 1.12939 1.21051 1.21178 0.88172 0.91299 0.88616 1.68090 1.33624 1.17065 1.04903 1.23983 0.86929 0.89652 1.01470 1.23341 1.01969 1.01091 0.97084 1.23751 0.96027 0.90742 0.92036 1.68600 1.01850 1.15412 1.43262 1.22075 0.97882 0.95038 0.90290 1.20674 0.94248 0.96867 1.01118 1.20359 1.01638 0.94477 0.93038 0.90786 1.22952 0.96833 0.91383 0.95907 0.92688 0.94352 0.94897 0.92245 0.95760 0.93156 0.96522 0.90398 0.90873 0.95485 0.77559 0.79015 0.79090 0.90291 0.94780 0.89618 0.90247 0.91181 0.96854 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.76 9.46 71.98 0.68 -4.08 16 2 C -0.10 -5.16 5.32 30.59 0.16 -5.00 16 3 C 0.22 11.20 1.52 44.17 0.07 11.27 16 4 H -0.05 -2.78 7.98 -2.39 -0.02 -2.79 16 5 C -0.50 -27.70 6.87 25.60 0.18 -27.52 16 6 H 0.06 3.07 7.01 -2.91 -0.02 3.04 16 7 C 0.01 0.75 5.30 84.65 0.45 1.20 16 8 N -0.92 -53.83 11.34 21.45 0.24 -53.59 16 9 Si 0.95 44.26 29.54 68.60 2.03 46.28 16 10 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 11 H -0.29 -13.17 7.11 99.48 0.71 -12.46 16 12 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 13 N -0.51 -21.90 4.40 -858.89 -3.78 -25.68 16 14 C 0.04 1.45 4.97 86.81 0.43 1.88 16 15 C -0.06 -1.95 3.36 -10.94 -0.04 -1.99 16 16 H 0.09 2.65 8.14 -2.38 -0.02 2.63 16 17 C 0.09 2.60 4.68 86.01 0.40 3.00 16 18 N -0.47 -13.49 4.77 -713.21 -3.40 -16.89 16 19 C 0.46 12.71 6.23 261.48 1.63 14.34 16 20 N -0.52 -12.62 10.47 -197.98 -2.07 -14.69 16 21 C 0.15 2.10 11.30 84.71 0.96 3.06 16 22 C -0.21 -2.33 10.16 22.44 0.23 -2.10 16 23 C 0.14 2.36 11.30 84.71 0.96 3.32 16 24 N -0.57 -14.95 9.69 -197.99 -1.92 -16.87 16 25 C 0.07 2.06 5.27 86.08 0.45 2.52 16 26 C -0.09 -2.37 5.65 29.40 0.17 -2.21 16 27 C -0.08 -2.33 2.63 -12.07 -0.03 -2.36 16 28 H 0.07 2.18 8.06 -2.39 -0.02 2.16 16 29 C 0.06 2.27 5.06 86.18 0.44 2.70 16 30 H 0.05 2.34 7.49 -2.39 -0.02 2.32 16 31 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 32 H 0.03 1.58 7.38 -2.38 -0.02 1.57 16 33 H 0.06 3.31 6.11 -2.39 -0.01 3.29 16 34 H 0.02 1.10 7.02 -2.39 -0.02 1.08 16 35 H 0.26 14.48 8.31 -92.71 -0.77 13.71 16 36 H 0.02 0.68 6.87 -2.38 -0.02 0.66 16 37 H 0.08 2.77 7.79 -2.39 -0.02 2.75 16 38 H 0.07 2.09 8.10 -2.39 -0.02 2.07 16 39 H 0.03 0.92 6.82 -2.39 -0.02 0.91 16 40 H 0.21 1.23 8.06 -2.91 -0.02 1.20 16 41 H 0.19 0.34 8.06 -2.91 -0.02 0.32 16 42 H 0.19 1.98 8.06 -2.91 -0.02 1.96 16 43 H 0.08 2.02 8.03 -2.39 -0.02 2.00 16 44 H 0.03 1.09 7.98 -2.39 -0.02 1.07 16 45 H 0.09 1.98 8.14 -2.39 -0.02 1.96 16 46 H 0.08 1.98 7.82 -2.39 -0.02 1.96 16 47 H 0.07 2.84 7.46 -2.38 -0.02 2.82 16 48 H 0.01 0.57 7.99 -2.39 -0.02 0.55 16 Total: -1.00 -69.50 367.42 -0.84 -70.34 By element: Atomic # 1 Polarization: 12.11 SS G_CDS: 0.93 Total: 13.05 kcal Atomic # 6 Polarization: -9.07 SS G_CDS: 7.13 Total: -1.95 kcal Atomic # 7 Polarization: -116.80 SS G_CDS: -10.92 Total: -127.72 kcal Atomic # 14 Polarization: 44.26 SS G_CDS: 2.03 Total: 46.28 kcal Total: -69.50 -0.84 -70.34 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255170244.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.030 kcal (2) G-P(sol) polarization free energy of solvation -69.502 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.528 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.837 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.339 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.692 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds