Wall clock time and date at job start Tue Mar 31 2020 10:50:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53002 * 109.46921 * 2 1 4 4 H 1.08996 * 109.47105 * 182.44066 * 3 2 1 5 5 C 1.50699 * 109.47503 * 302.44624 * 3 2 1 6 6 H 1.07995 * 120.00028 * 115.78895 * 5 3 2 7 7 C 1.37877 * 119.99802 * 295.79198 * 5 3 2 8 8 N 1.31521 * 120.00206 * 353.29672 * 7 5 3 9 9 Si 1.86793 * 120.00112 * 173.29863 * 7 5 3 10 10 H 1.48504 * 109.47672 * 179.97438 * 9 7 5 11 11 H 1.48501 * 109.47413 * 59.99767 * 9 7 5 12 12 H 1.48504 * 109.47181 * 300.00064 * 9 7 5 13 13 N 1.46902 * 109.46819 * 62.44794 * 3 2 1 14 14 C 1.47902 * 110.99834 * 177.54096 * 13 3 2 15 15 C 1.53994 * 107.05999 * 214.15421 * 14 13 3 16 16 H 1.08997 * 110.31468 * 120.13754 * 15 14 13 17 17 N 1.46502 * 110.31085 * 242.21045 * 15 14 13 18 18 C 1.34776 * 119.99834 * 204.99675 * 17 15 14 19 19 O 1.21510 * 120.00183 * 0.02562 * 18 17 15 20 20 O 1.34640 * 119.99717 * 179.97438 * 18 17 15 21 21 C 1.45202 * 116.99897 * 179.97438 * 20 18 17 22 22 C 1.52999 * 109.46710 * 60.00389 * 21 20 18 23 23 C 1.53001 * 109.46728 * 180.02562 * 21 20 18 24 24 C 1.52993 * 109.47335 * 300.00566 * 21 20 18 25 25 C 1.54603 * 105.13622 * 1.22157 * 15 14 13 26 26 H 1.09007 * 110.72197 * 140.31355 * 25 15 14 27 27 F 1.39891 * 110.72414 * 263.59738 * 25 15 14 28 28 C 1.48530 * 111.00395 * 60.14523 * 13 3 2 29 29 H 1.09000 * 109.46861 * 305.55143 * 1 2 3 30 30 H 1.08993 * 109.47004 * 65.55509 * 1 2 3 31 31 H 1.08994 * 109.47017 * 185.55488 * 1 2 3 32 32 H 1.08997 * 109.47059 * 240.00531 * 2 1 3 33 33 H 1.08998 * 109.47165 * 119.99950 * 2 1 3 34 34 H 0.97000 * 119.99758 * 354.91712 * 8 7 5 35 35 H 1.09004 * 109.91647 * 333.50678 * 14 13 3 36 36 H 1.09001 * 109.92126 * 94.60112 * 14 13 3 37 37 H 0.96997 * 119.99816 * 24.99403 * 17 15 14 38 38 H 1.09001 * 109.46988 * 60.00171 * 22 21 20 39 39 H 1.09007 * 109.47029 * 179.97438 * 22 21 20 40 40 H 1.08993 * 109.47279 * 299.99716 * 22 21 20 41 41 H 1.09001 * 109.46865 * 60.01074 * 23 21 20 42 42 H 1.09004 * 109.46779 * 179.97438 * 23 21 20 43 43 H 1.08996 * 109.47401 * 300.00006 * 23 21 20 44 44 H 1.08993 * 109.47313 * 59.99881 * 24 21 20 45 45 H 1.09004 * 109.47366 * 180.02562 * 24 21 20 46 46 H 1.09007 * 109.47255 * 299.99609 * 24 21 20 47 47 H 1.09003 * 110.66500 * 278.15212 * 28 13 3 48 48 H 1.09000 * 110.67106 * 41.28218 * 28 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1291 1.4429 -0.0438 5 6 1.4888 2.1703 -1.1990 6 1 0.8177 3.0053 -1.0623 7 6 1.8412 1.7700 -2.4704 8 7 2.7578 0.8416 -2.6372 9 14 1.0169 2.5461 -3.9561 10 1 1.5687 1.9470 -5.1978 11 1 1.2732 4.0088 -3.9566 12 1 -0.4464 2.3001 -3.8952 13 7 1.5992 2.1177 1.2280 14 6 2.1237 3.4991 1.2907 15 6 2.4004 3.8104 2.7733 16 1 3.4541 4.0478 2.9198 17 7 1.5617 4.9236 3.2244 18 6 1.9548 5.6851 4.2646 19 8 3.0051 5.4486 4.8280 20 8 1.1842 6.7085 4.6788 21 6 1.6699 7.4855 5.8052 22 6 3.0225 8.1066 5.4509 23 6 0.6677 8.5953 6.1290 24 6 1.8309 6.5731 7.0227 25 6 2.0314 2.5156 3.5333 26 1 2.7469 2.3200 4.3321 27 9 0.7300 2.5931 4.0405 28 6 2.1274 1.4289 2.4332 29 1 -0.3633 0.5975 0.8361 30 1 -0.3633 0.4252 -0.9355 31 1 -0.3633 -1.0228 0.0995 32 1 1.8934 -0.5137 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 3.2383 0.4913 -1.8709 35 1 3.0478 3.5719 0.7173 36 1 1.3848 4.1953 0.8938 37 1 0.7235 5.1127 2.7743 38 1 2.9078 8.7566 4.5835 39 1 3.3870 8.6903 6.2963 40 1 3.7362 7.3157 5.2204 41 1 -0.2957 8.1525 6.3817 42 1 1.0321 9.1784 6.9749 43 1 0.5527 9.2455 5.2618 44 1 2.5446 5.7822 6.7922 45 1 2.1950 7.1565 7.8684 46 1 0.8672 6.1306 7.2751 47 1 1.5079 0.5687 2.6872 48 1 3.1634 1.1265 2.2805 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255174205.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:50:32 Heat of formation + Delta-G solvation = -130.159132 kcal Electronic energy + Delta-G solvation = -28409.882127 eV Core-core repulsion = 24414.267721 eV Total energy + Delta-G solvation = -3995.614406 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.195 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -47.29822 -40.78353 -38.69181 -37.19394 -35.16233 -34.26436 -33.22770 -31.21037 -29.26545 -28.01055 -27.59815 -27.54007 -25.54512 -23.73639 -22.70203 -21.64900 -20.46752 -20.11443 -19.34192 -18.27100 -17.03660 -16.89239 -16.23088 -16.04239 -15.81452 -14.90931 -14.69449 -14.46324 -14.42931 -14.24106 -13.82752 -13.61082 -13.59061 -13.00541 -12.69830 -12.50813 -12.44137 -12.38164 -12.06794 -12.06182 -11.90151 -11.76630 -11.73812 -11.43234 -11.26523 -11.12848 -11.00801 -10.82729 -10.55988 -10.46906 -10.21497 -10.12494 -10.08299 -9.92560 -9.76755 -9.08840 -8.54546 -8.44942 -7.56211 -6.38596 -4.10178 2.13164 2.83524 3.41086 3.43495 3.61408 4.08198 4.43897 4.50806 4.53924 4.55856 4.60058 4.72597 4.74604 4.83682 5.26576 5.28395 5.33411 5.34477 5.41216 5.47386 5.49398 5.52465 5.59161 5.68253 5.78648 5.88430 5.98816 6.12230 6.12994 6.17648 6.22840 6.28948 6.33071 6.41518 6.47599 6.58427 6.84501 6.88951 7.05955 7.23024 7.44908 7.47009 7.63375 7.82747 8.21077 8.38628 8.49417 8.80489 9.58359 10.97095 Molecular weight = 316.19amu Principal moments of inertia in cm(-1) A = 0.019508 B = 0.003314 C = 0.003042 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1434.985153 B = 8446.078893 C = 9203.711990 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.114 4.114 3 C 0.197 3.803 4 H -0.006 1.006 5 C -0.579 4.579 6 H 0.056 0.944 7 C 0.023 3.977 8 N -0.911 5.911 9 Si 1.063 2.937 10 H -0.284 1.284 11 H -0.289 1.289 12 H -0.287 1.287 13 N -0.494 5.494 14 C 0.048 3.952 15 C 0.127 3.873 16 H 0.107 0.893 17 N -0.690 5.690 18 C 0.653 3.347 19 O -0.574 6.574 20 O -0.364 6.364 21 C 0.136 3.864 22 C -0.183 4.183 23 C -0.141 4.141 24 C -0.183 4.183 25 C 0.077 3.923 26 H 0.090 0.910 27 F -0.197 7.197 28 C 0.008 3.992 29 H 0.051 0.949 30 H 0.059 0.941 31 H 0.018 0.982 32 H 0.066 0.934 33 H 0.022 0.978 34 H 0.269 0.731 35 H 0.062 0.938 36 H 0.086 0.914 37 H 0.412 0.588 38 H 0.059 0.941 39 H 0.068 0.932 40 H 0.088 0.912 41 H 0.066 0.934 42 H 0.079 0.921 43 H 0.066 0.934 44 H 0.088 0.912 45 H 0.068 0.932 46 H 0.059 0.941 47 H 0.090 0.910 48 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.352 10.615 16.023 19.268 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.152 4.152 3 C 0.090 3.910 4 H 0.011 0.989 5 C -0.618 4.618 6 H 0.074 0.926 7 C -0.181 4.181 8 N -0.547 5.547 9 Si 0.892 3.108 10 H -0.209 1.209 11 H -0.216 1.216 12 H -0.213 1.213 13 N -0.219 5.219 14 C -0.080 4.080 15 C 0.022 3.978 16 H 0.125 0.875 17 N -0.348 5.348 18 C 0.407 3.593 19 O -0.464 6.464 20 O -0.278 6.278 21 C 0.099 3.901 22 C -0.241 4.241 23 C -0.198 4.198 24 C -0.240 4.240 25 C 0.038 3.962 26 H 0.108 0.892 27 F -0.178 7.178 28 C -0.121 4.121 29 H 0.070 0.930 30 H 0.078 0.922 31 H 0.037 0.963 32 H 0.084 0.916 33 H 0.041 0.959 34 H 0.080 0.920 35 H 0.080 0.920 36 H 0.104 0.896 37 H 0.248 0.752 38 H 0.078 0.922 39 H 0.087 0.913 40 H 0.107 0.893 41 H 0.085 0.915 42 H 0.097 0.903 43 H 0.085 0.915 44 H 0.106 0.894 45 H 0.087 0.913 46 H 0.078 0.922 47 H 0.109 0.891 48 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -1.527 10.496 14.671 18.104 hybrid contribution 0.597 0.102 1.529 1.644 sum -0.930 10.598 16.200 19.381 Atomic orbital electron populations 1.21440 0.96117 0.97743 1.02516 1.21594 0.96705 0.97830 0.99101 1.19640 0.92831 0.91443 0.87052 0.98886 1.21757 1.31163 1.17940 0.90934 0.92601 1.25691 0.96203 0.95725 1.00519 1.70807 1.22232 1.26909 1.34799 0.83620 0.75864 0.75504 0.75835 1.20932 1.21573 1.21349 1.64909 1.54554 1.00226 1.02199 1.22911 1.00610 0.93611 0.90897 1.22612 0.95756 0.84066 0.95404 0.87472 1.44631 1.26182 1.31266 1.32734 1.18066 0.81877 0.78889 0.80493 1.90868 1.24492 1.73081 1.57999 1.86313 1.50122 1.41756 1.49650 1.22039 0.94637 0.90017 0.83393 1.22520 0.97106 1.02302 1.02134 1.21857 0.98884 0.96736 1.02298 1.22509 1.03538 1.01266 0.96708 1.22869 0.80672 0.96425 0.96201 0.89210 1.92782 1.39429 1.97127 1.88463 1.23824 0.99737 0.97143 0.91389 0.92986 0.92167 0.96251 0.91593 0.95944 0.91957 0.91952 0.89616 0.75217 0.92168 0.91286 0.89308 0.91451 0.90256 0.91454 0.89351 0.91305 0.92154 0.89143 0.92726 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.56 9.45 37.16 0.35 -2.21 16 2 C -0.11 -2.53 5.18 -26.73 -0.14 -2.66 16 3 C 0.20 4.53 1.08 -68.86 -0.07 4.45 16 4 H -0.01 -0.16 7.38 -51.93 -0.38 -0.54 16 5 C -0.58 -14.86 6.75 -34.44 -0.23 -15.09 16 6 H 0.06 1.46 7.55 -52.49 -0.40 1.06 16 7 C 0.02 0.61 5.25 -17.82 -0.09 0.52 16 8 N -0.91 -25.84 12.86 55.43 0.71 -25.13 16 9 Si 1.06 24.17 29.91 -169.99 -5.08 19.08 16 10 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 11 H -0.29 -6.31 7.11 56.52 0.40 -5.91 16 12 H -0.29 -6.32 7.11 56.52 0.40 -5.92 16 13 N -0.49 -9.65 4.35 -223.89 -0.97 -10.62 16 14 C 0.05 0.85 5.58 -2.75 -0.02 0.83 16 15 C 0.13 1.91 3.31 -66.57 -0.22 1.69 16 16 H 0.11 1.58 7.56 -51.93 -0.39 1.19 16 17 N -0.69 -9.84 4.48 -57.40 -0.26 -10.10 16 18 C 0.65 9.64 8.06 54.05 0.44 10.08 16 19 O -0.57 -9.27 11.53 -19.28 -0.22 -9.49 16 20 O -0.36 -4.85 9.94 -40.32 -0.40 -5.25 16 21 C 0.14 1.46 1.13 -90.62 -0.10 1.36 16 22 C -0.18 -1.90 8.37 37.16 0.31 -1.59 16 23 C -0.14 -1.12 8.85 37.16 0.33 -0.79 16 24 C -0.18 -1.93 8.37 37.15 0.31 -1.62 16 25 C 0.08 1.16 4.78 -24.87 -0.12 1.04 16 26 H 0.09 1.22 8.14 -51.92 -0.42 0.80 16 27 F -0.20 -3.35 16.53 2.25 0.04 -3.31 16 28 C 0.01 0.13 5.21 -1.90 -0.01 0.12 16 29 H 0.05 1.08 7.52 -51.93 -0.39 0.69 16 30 H 0.06 1.39 7.36 -51.93 -0.38 1.01 16 31 H 0.02 0.36 8.14 -51.93 -0.42 -0.07 16 32 H 0.07 1.62 6.26 -51.93 -0.33 1.29 16 33 H 0.02 0.44 6.81 -51.93 -0.35 0.09 16 34 H 0.27 7.59 6.07 -40.82 -0.25 7.34 16 35 H 0.06 1.17 7.70 -51.93 -0.40 0.77 16 36 H 0.09 1.52 7.56 -51.93 -0.39 1.12 16 37 H 0.41 5.50 8.47 -40.82 -0.35 5.15 16 38 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.07 0.56 8.14 -51.92 -0.42 0.14 16 40 H 0.09 1.13 5.88 -51.93 -0.31 0.83 16 41 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 42 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 43 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 44 H 0.09 1.14 5.88 -51.93 -0.31 0.84 16 45 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 46 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 47 H 0.09 1.51 7.60 -51.93 -0.39 1.12 16 48 H 0.05 0.88 8.00 -51.93 -0.42 0.46 16 LS Contribution 373.16 15.07 5.62 5.62 Total: -1.00 -29.11 373.16 -7.86 -36.97 By element: Atomic # 1 Polarization: 14.12 SS G_CDS: -8.03 Total: 6.09 kcal Atomic # 6 Polarization: -4.59 SS G_CDS: 0.73 Total: -3.86 kcal Atomic # 7 Polarization: -45.34 SS G_CDS: -0.52 Total: -45.86 kcal Atomic # 8 Polarization: -14.12 SS G_CDS: -0.62 Total: -14.74 kcal Atomic # 9 Polarization: -3.35 SS G_CDS: 0.04 Total: -3.31 kcal Atomic # 14 Polarization: 24.17 SS G_CDS: -5.08 Total: 19.08 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -29.11 -7.86 -36.97 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255174205.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.190 kcal (2) G-P(sol) polarization free energy of solvation -29.107 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.297 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.862 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.969 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.159 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds