Wall clock time and date at job start Tue Mar 31 2020 10:50:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53002 * 109.46921 * 2 1 4 4 H 1.08996 * 109.47105 * 182.44066 * 3 2 1 5 5 C 1.50699 * 109.47503 * 302.44624 * 3 2 1 6 6 H 1.07995 * 120.00028 * 115.78895 * 5 3 2 7 7 C 1.37877 * 119.99802 * 295.79198 * 5 3 2 8 8 N 1.31521 * 120.00206 * 353.29672 * 7 5 3 9 9 Si 1.86793 * 120.00112 * 173.29863 * 7 5 3 10 10 H 1.48504 * 109.47672 * 179.97438 * 9 7 5 11 11 H 1.48501 * 109.47413 * 59.99767 * 9 7 5 12 12 H 1.48504 * 109.47181 * 300.00064 * 9 7 5 13 13 N 1.46902 * 109.46819 * 62.44794 * 3 2 1 14 14 C 1.47902 * 110.99834 * 177.54096 * 13 3 2 15 15 C 1.53994 * 107.05999 * 214.15421 * 14 13 3 16 16 H 1.08997 * 110.31468 * 120.13754 * 15 14 13 17 17 N 1.46502 * 110.31085 * 242.21045 * 15 14 13 18 18 C 1.34776 * 119.99834 * 204.99675 * 17 15 14 19 19 O 1.21510 * 120.00183 * 0.02562 * 18 17 15 20 20 O 1.34640 * 119.99717 * 179.97438 * 18 17 15 21 21 C 1.45202 * 116.99897 * 179.97438 * 20 18 17 22 22 C 1.52999 * 109.46710 * 60.00389 * 21 20 18 23 23 C 1.53001 * 109.46728 * 180.02562 * 21 20 18 24 24 C 1.52993 * 109.47335 * 300.00566 * 21 20 18 25 25 C 1.54603 * 105.13622 * 1.22157 * 15 14 13 26 26 H 1.09007 * 110.72197 * 140.31355 * 25 15 14 27 27 F 1.39891 * 110.72414 * 263.59738 * 25 15 14 28 28 C 1.48530 * 111.00395 * 60.14523 * 13 3 2 29 29 H 1.09000 * 109.46861 * 305.55143 * 1 2 3 30 30 H 1.08993 * 109.47004 * 65.55509 * 1 2 3 31 31 H 1.08994 * 109.47017 * 185.55488 * 1 2 3 32 32 H 1.08997 * 109.47059 * 240.00531 * 2 1 3 33 33 H 1.08998 * 109.47165 * 119.99950 * 2 1 3 34 34 H 0.97000 * 119.99758 * 354.91712 * 8 7 5 35 35 H 1.09004 * 109.91647 * 333.50678 * 14 13 3 36 36 H 1.09001 * 109.92126 * 94.60112 * 14 13 3 37 37 H 0.96997 * 119.99816 * 24.99403 * 17 15 14 38 38 H 1.09001 * 109.46988 * 60.00171 * 22 21 20 39 39 H 1.09007 * 109.47029 * 179.97438 * 22 21 20 40 40 H 1.08993 * 109.47279 * 299.99716 * 22 21 20 41 41 H 1.09001 * 109.46865 * 60.01074 * 23 21 20 42 42 H 1.09004 * 109.46779 * 179.97438 * 23 21 20 43 43 H 1.08996 * 109.47401 * 300.00006 * 23 21 20 44 44 H 1.08993 * 109.47313 * 59.99881 * 24 21 20 45 45 H 1.09004 * 109.47366 * 180.02562 * 24 21 20 46 46 H 1.09007 * 109.47255 * 299.99609 * 24 21 20 47 47 H 1.09003 * 110.66500 * 278.15212 * 28 13 3 48 48 H 1.09000 * 110.67106 * 41.28218 * 28 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1291 1.4429 -0.0438 5 6 1.4888 2.1703 -1.1990 6 1 0.8177 3.0053 -1.0623 7 6 1.8412 1.7700 -2.4704 8 7 2.7578 0.8416 -2.6372 9 14 1.0169 2.5461 -3.9561 10 1 1.5687 1.9470 -5.1978 11 1 1.2732 4.0088 -3.9566 12 1 -0.4464 2.3001 -3.8952 13 7 1.5992 2.1177 1.2280 14 6 2.1237 3.4991 1.2907 15 6 2.4004 3.8104 2.7733 16 1 3.4541 4.0478 2.9198 17 7 1.5617 4.9236 3.2244 18 6 1.9548 5.6851 4.2646 19 8 3.0051 5.4486 4.8280 20 8 1.1842 6.7085 4.6788 21 6 1.6699 7.4855 5.8052 22 6 3.0225 8.1066 5.4509 23 6 0.6677 8.5953 6.1290 24 6 1.8309 6.5731 7.0227 25 6 2.0314 2.5156 3.5333 26 1 2.7469 2.3200 4.3321 27 9 0.7300 2.5931 4.0405 28 6 2.1274 1.4289 2.4332 29 1 -0.3633 0.5975 0.8361 30 1 -0.3633 0.4252 -0.9355 31 1 -0.3633 -1.0228 0.0995 32 1 1.8934 -0.5137 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 3.2383 0.4913 -1.8709 35 1 3.0478 3.5719 0.7173 36 1 1.3848 4.1953 0.8938 37 1 0.7235 5.1127 2.7743 38 1 2.9078 8.7566 4.5835 39 1 3.3870 8.6903 6.2963 40 1 3.7362 7.3157 5.2204 41 1 -0.2957 8.1525 6.3817 42 1 1.0321 9.1784 6.9749 43 1 0.5527 9.2455 5.2618 44 1 2.5446 5.7822 6.7922 45 1 2.1950 7.1565 7.8684 46 1 0.8672 6.1306 7.2751 47 1 1.5079 0.5687 2.6872 48 1 3.1634 1.1265 2.2805 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255174205.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:50:31 Heat of formation + Delta-G solvation = -148.111899 kcal Electronic energy + Delta-G solvation = -28410.660618 eV Core-core repulsion = 24414.267721 eV Total energy + Delta-G solvation = -3996.392897 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.195 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -48.60685 -41.85508 -40.11611 -38.36797 -36.65901 -35.38250 -34.55603 -33.03611 -30.76145 -29.38618 -28.34878 -28.28451 -27.37437 -25.54409 -23.84937 -23.14856 -21.77724 -21.13875 -21.05637 -19.36528 -18.82425 -18.06438 -17.42322 -17.24320 -17.10108 -16.18804 -15.99572 -15.89641 -15.63721 -15.59063 -15.28545 -15.17831 -14.67848 -14.49323 -14.07594 -13.91180 -13.48312 -13.43401 -13.32262 -13.22983 -12.97170 -12.90106 -12.85927 -12.76288 -12.61814 -12.58076 -12.31264 -12.27074 -12.10058 -11.95257 -11.84488 -11.62700 -11.53821 -11.38931 -11.14079 -10.47438 -10.46599 -10.28248 -9.19675 -8.50331 -6.21301 1.07934 1.56703 1.62386 1.69225 1.81098 2.59612 3.01126 3.14469 3.23090 3.28337 3.31793 3.56663 3.76214 3.81292 3.95937 4.03698 4.14954 4.24294 4.38822 4.46416 4.52796 4.58192 4.62688 4.62990 4.69412 4.77903 4.78398 4.83015 4.85501 4.88944 4.89394 5.03922 5.09564 5.18581 5.22670 5.29756 5.31625 5.36821 5.45490 5.54245 5.69190 5.90773 6.01529 6.29180 6.33309 6.49503 6.73376 7.26791 7.53900 8.86014 Molecular weight = 316.19amu Principal moments of inertia in cm(-1) A = 0.019508 B = 0.003314 C = 0.003042 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1434.985153 B = 8446.078893 C = 9203.711990 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.110 4.110 3 C 0.203 3.797 4 H -0.034 1.034 5 C -0.577 4.577 6 H 0.048 0.952 7 C -0.023 4.023 8 N -0.938 5.938 9 Si 1.103 2.897 10 H -0.290 1.290 11 H -0.274 1.274 12 H -0.275 1.275 13 N -0.503 5.503 14 C 0.052 3.948 15 C 0.140 3.860 16 H 0.113 0.887 17 N -0.689 5.689 18 C 0.653 3.347 19 O -0.589 6.589 20 O -0.369 6.369 21 C 0.122 3.878 22 C -0.180 4.180 23 C -0.136 4.136 24 C -0.179 4.179 25 C 0.083 3.917 26 H 0.114 0.886 27 F -0.205 7.205 28 C 0.008 3.992 29 H 0.055 0.945 30 H 0.034 0.966 31 H 0.042 0.958 32 H 0.038 0.962 33 H 0.044 0.956 34 H 0.259 0.741 35 H 0.045 0.955 36 H 0.082 0.918 37 H 0.416 0.584 38 H 0.060 0.940 39 H 0.093 0.907 40 H 0.062 0.938 41 H 0.067 0.933 42 H 0.105 0.895 43 H 0.068 0.932 44 H 0.061 0.939 45 H 0.093 0.907 46 H 0.059 0.941 47 H 0.094 0.906 48 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.227 11.899 17.729 21.468 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.148 4.148 3 C 0.095 3.905 4 H -0.016 1.016 5 C -0.615 4.615 6 H 0.066 0.934 7 C -0.222 4.222 8 N -0.576 5.576 9 Si 0.927 3.073 10 H -0.216 1.216 11 H -0.199 1.199 12 H -0.201 1.201 13 N -0.227 5.227 14 C -0.076 4.076 15 C 0.034 3.966 16 H 0.131 0.869 17 N -0.347 5.347 18 C 0.407 3.593 19 O -0.480 6.480 20 O -0.283 6.283 21 C 0.086 3.914 22 C -0.237 4.237 23 C -0.193 4.193 24 C -0.236 4.236 25 C 0.045 3.955 26 H 0.132 0.868 27 F -0.186 7.186 28 C -0.120 4.120 29 H 0.074 0.926 30 H 0.054 0.946 31 H 0.061 0.939 32 H 0.056 0.944 33 H 0.063 0.937 34 H 0.069 0.931 35 H 0.064 0.936 36 H 0.100 0.900 37 H 0.253 0.747 38 H 0.079 0.921 39 H 0.112 0.888 40 H 0.081 0.919 41 H 0.087 0.913 42 H 0.123 0.877 43 H 0.087 0.913 44 H 0.080 0.920 45 H 0.112 0.888 46 H 0.078 0.922 47 H 0.112 0.888 48 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -2.421 11.803 16.407 20.356 hybrid contribution 0.881 -0.253 1.094 1.427 sum -1.540 11.550 17.501 21.025 Atomic orbital electron populations 1.21317 0.95106 0.99085 1.01225 1.21498 0.97455 0.97097 0.98770 1.19427 0.90993 0.92109 0.87953 1.01632 1.21982 1.30114 1.17444 0.91988 0.93353 1.26834 0.96229 0.95717 1.03382 1.70907 1.23731 1.28602 1.34369 0.83094 0.75672 0.75599 0.72968 1.21593 1.19945 1.20051 1.64801 1.54923 1.01122 1.01882 1.22816 0.99552 0.92615 0.92655 1.22372 0.96178 0.84511 0.93501 0.86924 1.44549 1.26213 1.31088 1.32867 1.18124 0.81770 0.79115 0.80328 1.90869 1.25153 1.73552 1.58465 1.86331 1.50062 1.41332 1.50608 1.22469 0.95767 0.90505 0.82620 1.22477 0.96320 1.01631 1.03247 1.21890 0.98187 0.95828 1.03357 1.22468 1.02803 1.00848 0.97508 1.22913 0.80657 0.95587 0.96351 0.86796 1.92769 1.40213 1.97107 1.88535 1.23871 1.00123 0.97579 0.90473 0.92611 0.94635 0.93907 0.94367 0.93732 0.93074 0.93619 0.89996 0.74735 0.92081 0.88832 0.91949 0.91344 0.87686 0.91266 0.91985 0.88809 0.92216 0.88793 0.91947 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.57 9.45 71.98 0.68 -3.89 16 2 C -0.11 -4.86 5.18 30.60 0.16 -4.71 16 3 C 0.20 9.43 1.08 44.17 0.05 9.48 16 4 H -0.03 -1.73 7.38 -2.39 -0.02 -1.75 16 5 C -0.58 -29.95 6.75 25.60 0.17 -29.78 16 6 H 0.05 2.54 7.55 -2.91 -0.02 2.52 16 7 C -0.02 -1.24 5.25 84.65 0.44 -0.79 16 8 N -0.94 -54.46 12.86 21.45 0.28 -54.18 16 9 Si 1.10 48.86 29.91 68.60 2.05 50.91 16 10 H -0.29 -13.09 7.11 99.48 0.71 -12.38 16 11 H -0.27 -11.36 7.11 99.48 0.71 -10.65 16 12 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 13 N -0.50 -19.45 4.35 -862.24 -3.75 -23.20 16 14 C 0.05 1.83 5.58 86.45 0.48 2.31 16 15 C 0.14 4.08 3.31 45.87 0.15 4.23 16 16 H 0.11 3.21 7.56 -2.39 -0.02 3.19 16 17 N -0.69 -19.02 4.48 -565.91 -2.54 -21.56 16 18 C 0.65 18.69 8.06 129.79 1.05 19.74 16 19 O -0.59 -18.61 11.53 19.81 0.23 -18.38 16 20 O -0.37 -9.39 9.94 -55.49 -0.55 -9.94 16 21 C 0.12 2.41 1.13 -10.80 -0.01 2.40 16 22 C -0.18 -3.42 8.37 71.98 0.60 -2.82 16 23 C -0.14 -1.78 8.85 71.98 0.64 -1.15 16 24 C -0.18 -3.45 8.37 71.98 0.60 -2.85 16 25 C 0.08 2.38 4.78 31.80 0.15 2.53 16 26 H 0.11 2.81 8.14 -2.38 -0.02 2.79 16 27 F -0.21 -6.60 16.53 44.97 0.74 -5.86 16 28 C 0.01 0.26 5.21 86.65 0.45 0.71 16 29 H 0.05 2.25 7.52 -2.39 -0.02 2.23 16 30 H 0.03 1.62 7.36 -2.39 -0.02 1.60 16 31 H 0.04 1.54 8.14 -2.39 -0.02 1.53 16 32 H 0.04 1.90 6.26 -2.39 -0.01 1.89 16 33 H 0.04 1.75 6.81 -2.39 -0.02 1.73 16 34 H 0.26 15.12 6.07 -92.71 -0.56 14.56 16 35 H 0.05 1.75 7.70 -2.38 -0.02 1.73 16 36 H 0.08 2.90 7.56 -2.39 -0.02 2.88 16 37 H 0.42 10.76 8.47 -92.71 -0.78 9.97 16 38 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 39 H 0.09 1.28 8.14 -2.38 -0.02 1.26 16 40 H 0.06 1.55 5.88 -2.39 -0.01 1.53 16 41 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 42 H 0.10 0.85 8.14 -2.38 -0.02 0.83 16 43 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 44 H 0.06 1.55 5.88 -2.39 -0.01 1.54 16 45 H 0.09 1.29 8.14 -2.38 -0.02 1.27 16 46 H 0.06 1.14 8.14 -2.38 -0.02 1.12 16 47 H 0.09 2.96 7.60 -2.39 -0.02 2.94 16 48 H 0.06 1.93 8.00 -2.39 -0.02 1.91 16 Total: -1.00 -63.00 373.16 2.45 -60.55 By element: Atomic # 1 Polarization: 25.88 SS G_CDS: 0.37 Total: 26.25 kcal Atomic # 6 Polarization: -10.20 SS G_CDS: 5.62 Total: -4.59 kcal Atomic # 7 Polarization: -92.94 SS G_CDS: -6.01 Total: -98.94 kcal Atomic # 8 Polarization: -28.00 SS G_CDS: -0.32 Total: -28.32 kcal Atomic # 9 Polarization: -6.60 SS G_CDS: 0.74 Total: -5.86 kcal Atomic # 14 Polarization: 48.86 SS G_CDS: 2.05 Total: 50.91 kcal Total: -63.00 2.45 -60.55 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255174205.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.562 kcal (2) G-P(sol) polarization free energy of solvation -63.002 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -150.565 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.453 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.550 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.112 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds