Wall clock time and date at job start Tue Mar 31 2020 11:36:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53003 * 109.47015 * 2 1 4 4 H 1.09003 * 109.47144 * 181.35714 * 3 2 1 5 5 C 1.50702 * 109.46925 * 61.35491 * 3 2 1 6 6 H 1.08000 * 119.99971 * 239.99524 * 5 3 2 7 7 C 1.37871 * 119.99875 * 60.00751 * 5 3 2 8 8 N 1.31514 * 120.00131 * 359.97438 * 7 5 3 9 9 Si 1.86801 * 119.99808 * 179.97438 * 7 5 3 10 10 H 1.48493 * 109.47302 * 359.97438 * 9 7 5 11 11 H 1.48501 * 109.47154 * 119.99472 * 9 7 5 12 12 H 1.48496 * 109.47247 * 239.99063 * 9 7 5 13 13 N 1.46904 * 109.47110 * 301.35745 * 3 2 1 14 14 C 1.46843 * 110.99753 * 177.92390 * 13 3 2 15 15 C 1.53038 * 109.52111 * 185.83770 * 14 13 3 16 16 C 1.53116 * 109.28089 * 300.81806 * 15 14 13 17 17 H 1.08999 * 109.51940 * 297.74971 * 16 15 14 18 18 N 1.46895 * 109.52777 * 177.55793 * 16 15 14 19 19 C 1.46847 * 110.99826 * 78.67238 * 18 16 15 20 20 C 1.53039 * 109.52288 * 174.16124 * 19 18 16 21 21 C 1.53123 * 109.27818 * 59.18410 * 20 19 18 22 22 C 1.53118 * 109.15694 * 302.34536 * 21 20 19 23 23 C 1.46848 * 111.00150 * 314.47053 * 18 16 15 24 24 C 1.53122 * 109.16134 * 57.65158 * 16 15 14 25 25 F 1.39897 * 109.50005 * 62.28729 * 24 16 15 26 26 F 1.39899 * 109.50590 * 182.40689 * 24 16 15 27 27 C 1.46851 * 110.99783 * 302.12807 * 13 3 2 28 28 H 1.09009 * 109.46981 * 294.87069 * 1 2 3 29 29 H 1.09000 * 109.47221 * 174.87976 * 1 2 3 30 30 H 1.08995 * 109.47320 * 54.87142 * 1 2 3 31 31 H 1.08992 * 109.47494 * 119.99746 * 2 1 3 32 32 H 1.09005 * 109.46973 * 240.00152 * 2 1 3 33 33 H 0.97002 * 120.00111 * 180.02562 * 8 7 5 34 34 H 1.09008 * 109.46322 * 305.84883 * 14 13 3 35 35 H 1.08995 * 109.47270 * 65.82236 * 14 13 3 36 36 H 1.09004 * 109.50458 * 60.75763 * 15 14 13 37 37 H 1.08999 * 109.50613 * 180.87395 * 15 14 13 38 38 H 1.08998 * 109.47094 * 294.18024 * 19 18 16 39 39 H 1.09002 * 109.46263 * 54.14730 * 19 18 16 40 40 H 1.08998 * 109.50582 * 299.24291 * 20 19 18 41 41 H 1.09005 * 109.53492 * 179.14020 * 20 19 18 42 42 H 1.09002 * 109.52162 * 182.43834 * 21 20 19 43 43 H 1.08996 * 109.57372 * 62.27856 * 21 20 19 44 44 H 1.09002 * 109.50378 * 297.71416 * 22 21 20 45 45 H 1.08997 * 109.53613 * 177.61694 * 22 21 20 46 46 H 1.09004 * 109.45765 * 305.85101 * 23 18 16 47 47 H 1.08997 * 109.46594 * 65.81404 * 23 18 16 48 48 H 1.09000 * 109.46229 * 294.18011 * 27 13 3 49 49 H 1.09003 * 109.45948 * 54.14676 * 27 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1297 1.4427 -0.0243 5 6 1.5652 2.1431 1.2469 6 1 0.9424 3.0220 1.1687 7 6 1.9262 1.6623 2.4876 8 7 2.6845 0.5920 2.5830 9 14 1.3383 2.5312 4.0333 10 1 0.5054 3.7015 3.6569 11 1 0.5313 1.5917 4.8526 12 1 2.5113 2.9912 4.8191 13 7 1.5237 2.1444 -1.1827 14 6 1.9533 3.5486 -1.1905 15 6 1.2811 4.2826 -2.3530 16 6 1.6669 3.6041 -3.6702 17 1 2.7452 3.6739 -3.8137 18 7 0.9781 4.2682 -4.7848 19 6 1.6490 5.5240 -5.1447 20 6 0.9949 6.1127 -6.3967 21 6 -0.4895 6.3665 -6.1199 22 6 -1.1543 5.0525 -5.7004 23 6 -0.4379 4.4945 -4.4686 24 6 1.2520 2.1311 -3.6172 25 9 -0.1377 2.0419 -3.4831 26 9 1.6504 1.4909 -4.7956 27 6 1.9251 1.4595 -2.4181 28 1 -0.3633 0.4322 0.9324 29 1 -0.3634 -1.0236 -0.0917 30 1 -0.3634 0.5913 -0.8404 31 1 1.8934 -0.5137 0.8899 32 1 1.8933 -0.5138 -0.8900 33 1 2.9381 0.2535 3.4559 34 1 1.6691 4.0206 -0.2500 35 1 3.0358 3.5967 -1.3082 36 1 0.1987 4.2470 -2.2287 37 1 1.6121 5.3210 -2.3679 38 1 1.5599 6.2324 -4.3211 39 1 2.7029 5.3288 -5.3431 40 1 1.0959 5.4106 -7.2244 41 1 1.4828 7.0526 -6.6552 42 1 -0.9688 6.7454 -7.0226 43 1 -0.5916 7.0984 -5.3186 44 1 -1.0871 4.3337 -6.5171 45 1 -2.2019 5.2343 -5.4609 46 1 -0.8998 3.5516 -4.1759 47 1 -0.5173 5.2077 -3.6481 48 1 3.0078 1.5172 -2.5300 49 1 1.6204 0.4140 -2.3691 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255177342.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:36:27 Heat of formation + Delta-G solvation = -94.438521 kcal Electronic energy + Delta-G solvation = -29589.147221 eV Core-core repulsion = 25607.454566 eV Total energy + Delta-G solvation = -3981.692655 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.202 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -48.53586 -46.52452 -39.49015 -37.85066 -34.95998 -33.04382 -31.38387 -30.89346 -29.79439 -29.37408 -26.48502 -24.65965 -23.61032 -23.22791 -22.67638 -21.88647 -20.24089 -19.29489 -19.08488 -17.09314 -16.55545 -16.32356 -16.15005 -15.39803 -15.06786 -14.91568 -14.53557 -14.40997 -14.06808 -13.79204 -13.49683 -13.41197 -13.25382 -13.10661 -13.01478 -12.77148 -12.39499 -12.26106 -12.11116 -11.83940 -11.69620 -11.61813 -11.32189 -11.14339 -11.00340 -10.89598 -10.73316 -10.68515 -10.55818 -10.46844 -10.33095 -10.08571 -9.89945 -9.56700 -9.41095 -8.88869 -8.48384 -8.24212 -7.35868 -6.07552 -4.11607 3.25200 3.34127 3.37171 3.67251 4.06224 4.30940 4.46712 4.55840 4.68932 4.76925 4.80564 4.92432 5.02356 5.18582 5.24702 5.31760 5.34568 5.43740 5.50716 5.53897 5.63102 5.68674 5.77212 5.82999 5.87210 5.90713 5.93976 5.96462 6.03654 6.09835 6.24675 6.29326 6.40552 6.46773 6.56899 6.60310 6.74391 6.97938 7.07132 7.10854 7.21193 7.29871 7.56411 7.66098 7.76445 8.01367 8.22751 8.43904 8.92626 9.52692 10.98960 Molecular weight = 316.20amu Principal moments of inertia in cm(-1) A = 0.020227 B = 0.004058 C = 0.003743 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1383.931619 B = 6897.791562 C = 7479.594941 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.114 4.114 3 C 0.220 3.780 4 H 0.001 0.999 5 C -0.498 4.498 6 H 0.064 0.936 7 C 0.062 3.938 8 N -0.891 5.891 9 Si 0.894 3.106 10 H -0.273 1.273 11 H -0.284 1.284 12 H -0.286 1.286 13 N -0.519 5.519 14 C 0.062 3.938 15 C -0.147 4.147 16 C 0.048 3.952 17 H 0.100 0.900 18 N -0.527 5.527 19 C 0.055 3.945 20 C -0.115 4.115 21 C -0.121 4.121 22 C -0.115 4.115 23 C 0.028 3.972 24 C 0.309 3.691 25 F -0.185 7.185 26 F -0.200 7.200 27 C 0.014 3.986 28 H 0.054 0.946 29 H 0.016 0.984 30 H 0.049 0.951 31 H 0.094 0.906 32 H 0.013 0.987 33 H 0.260 0.740 34 H 0.096 0.904 35 H 0.024 0.976 36 H 0.084 0.916 37 H 0.068 0.932 38 H 0.035 0.965 39 H 0.072 0.928 40 H 0.070 0.930 41 H 0.064 0.936 42 H 0.060 0.940 43 H 0.057 0.943 44 H 0.068 0.932 45 H 0.064 0.936 46 H 0.104 0.896 47 H 0.039 0.961 48 H 0.050 0.950 49 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.685 8.452 -14.582 17.066 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.152 4.152 3 C 0.114 3.886 4 H 0.019 0.981 5 C -0.537 4.537 6 H 0.082 0.918 7 C -0.140 4.140 8 N -0.530 5.530 9 Si 0.722 3.278 10 H -0.198 1.198 11 H -0.210 1.210 12 H -0.212 1.212 13 N -0.245 5.245 14 C -0.067 4.067 15 C -0.186 4.186 16 C -0.061 4.061 17 H 0.118 0.882 18 N -0.250 5.250 19 C -0.073 4.073 20 C -0.152 4.152 21 C -0.159 4.159 22 C -0.153 4.153 23 C -0.099 4.099 24 C 0.272 3.728 25 F -0.166 7.166 26 F -0.181 7.181 27 C -0.117 4.117 28 H 0.074 0.926 29 H 0.035 0.965 30 H 0.068 0.932 31 H 0.112 0.888 32 H 0.032 0.968 33 H 0.070 0.930 34 H 0.115 0.885 35 H 0.042 0.958 36 H 0.102 0.898 37 H 0.087 0.913 38 H 0.053 0.947 39 H 0.091 0.909 40 H 0.088 0.912 41 H 0.082 0.918 42 H 0.079 0.921 43 H 0.076 0.924 44 H 0.087 0.913 45 H 0.083 0.917 46 H 0.122 0.878 47 H 0.057 0.943 48 H 0.068 0.932 49 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -3.113 8.007 -14.857 17.162 hybrid contribution 0.583 0.861 1.415 1.756 sum -2.529 8.868 -13.441 16.301 Atomic orbital electron populations 1.21477 0.97040 0.97508 1.02013 1.21614 0.95436 0.97926 1.00214 1.19300 0.92720 0.90945 0.85588 0.98134 1.21043 1.31207 1.12016 0.89389 0.91793 1.24885 0.95108 0.95044 0.98949 1.69879 1.36433 1.22580 1.24087 0.86504 0.78456 0.79670 0.83182 1.19755 1.21008 1.21201 1.62015 1.60177 1.01178 1.01087 1.22009 0.96085 0.90040 0.98595 1.22311 1.03240 0.99026 0.94033 1.22698 1.00020 0.92199 0.91221 0.88235 1.62089 1.02679 1.23603 1.36665 1.22097 0.98157 0.90090 0.96943 1.21563 0.95532 1.00247 0.97905 1.21586 0.95767 0.97613 1.00942 1.21579 0.98528 0.96804 0.98403 1.22692 0.88005 1.02794 0.96435 1.21022 0.76797 0.92186 0.82787 1.92816 1.31358 1.96556 1.95888 1.92966 1.90521 1.83775 1.50820 1.22992 0.97879 1.00623 0.90158 0.92645 0.96530 0.93233 0.88752 0.96795 0.92963 0.88537 0.95764 0.89755 0.91303 0.94664 0.90948 0.91153 0.91779 0.92119 0.92404 0.91320 0.91690 0.87776 0.94309 0.93220 0.88208 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.67 9.49 37.16 0.35 -2.32 16 2 C -0.11 -2.62 5.04 -26.73 -0.13 -2.75 16 3 C 0.22 5.15 1.76 -68.86 -0.12 5.03 16 4 H 0.00 0.03 8.14 -51.93 -0.42 -0.39 16 5 C -0.50 -12.64 6.75 -34.44 -0.23 -12.88 16 6 H 0.06 1.63 6.55 -52.49 -0.34 1.29 16 7 C 0.06 1.61 5.30 -17.82 -0.09 1.52 16 8 N -0.89 -24.25 11.31 55.43 0.63 -23.63 16 9 Si 0.89 20.52 29.54 -169.99 -5.02 15.50 16 10 H -0.27 -6.20 7.11 56.52 0.40 -5.79 16 11 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 12 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 13 N -0.52 -10.30 3.54 -228.07 -0.81 -11.11 16 14 C 0.06 1.10 5.23 -3.84 -0.02 1.08 16 15 C -0.15 -2.16 4.38 -26.65 -0.12 -2.27 16 16 C 0.05 0.69 1.95 -67.59 -0.13 0.56 16 17 H 0.10 1.37 7.83 -51.93 -0.41 0.96 16 18 N -0.53 -6.94 4.51 -226.55 -1.02 -7.96 16 19 C 0.05 0.60 5.25 -3.83 -0.02 0.58 16 20 C -0.11 -1.08 6.09 -26.65 -0.16 -1.25 16 21 C -0.12 -1.13 6.00 -26.61 -0.16 -1.29 16 22 C -0.12 -1.24 6.09 -26.65 -0.16 -1.40 16 23 C 0.03 0.36 4.19 -3.84 -0.02 0.34 16 24 C 0.31 5.10 1.80 -26.65 -0.05 5.05 16 25 F -0.19 -3.28 13.44 2.25 0.03 -3.25 16 26 F -0.20 -3.40 17.03 2.25 0.04 -3.36 16 27 C 0.01 0.24 4.67 -3.83 -0.02 0.22 16 28 H 0.05 1.29 7.44 -51.92 -0.39 0.90 16 29 H 0.02 0.31 8.14 -51.93 -0.42 -0.11 16 30 H 0.05 1.05 7.41 -51.93 -0.38 0.67 16 31 H 0.09 2.44 6.03 -51.93 -0.31 2.12 16 32 H 0.01 0.29 6.32 -51.93 -0.33 -0.04 16 33 H 0.26 6.82 8.31 -40.82 -0.34 6.48 16 34 H 0.10 1.87 6.16 -51.92 -0.32 1.55 16 35 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 36 H 0.08 1.33 6.08 -51.93 -0.32 1.01 16 37 H 0.07 0.90 7.29 -51.93 -0.38 0.52 16 38 H 0.04 0.38 7.29 -51.93 -0.38 0.01 16 39 H 0.07 0.76 7.94 -51.93 -0.41 0.34 16 40 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 41 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 42 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 43 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 44 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 45 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 46 H 0.10 1.53 5.02 -51.93 -0.26 1.27 16 47 H 0.04 0.50 6.56 -51.93 -0.34 0.16 16 48 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 49 H 0.10 1.86 5.98 -51.93 -0.31 1.55 16 LS Contribution 358.31 15.07 5.40 5.40 Total: -1.00 -26.39 358.31 -10.08 -36.47 By element: Atomic # 1 Polarization: 9.96 SS G_CDS: -8.24 Total: 1.72 kcal Atomic # 6 Polarization: -8.69 SS G_CDS: -1.09 Total: -9.78 kcal Atomic # 7 Polarization: -41.50 SS G_CDS: -1.20 Total: -42.70 kcal Atomic # 9 Polarization: -6.68 SS G_CDS: 0.07 Total: -6.61 kcal Atomic # 14 Polarization: 20.52 SS G_CDS: -5.02 Total: 15.50 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -26.39 -10.08 -36.47 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255177342.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.968 kcal (2) G-P(sol) polarization free energy of solvation -26.388 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.356 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.082 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.470 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.439 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds