Wall clock time and date at job start Tue Mar 31 2020 11:36:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53003 * 109.47015 * 2 1 4 4 H 1.09003 * 109.47144 * 181.35714 * 3 2 1 5 5 C 1.50702 * 109.46925 * 61.35491 * 3 2 1 6 6 H 1.08000 * 119.99971 * 239.99524 * 5 3 2 7 7 C 1.37871 * 119.99875 * 60.00751 * 5 3 2 8 8 N 1.31514 * 120.00131 * 359.97438 * 7 5 3 9 9 Si 1.86801 * 119.99808 * 179.97438 * 7 5 3 10 10 H 1.48493 * 109.47302 * 359.97438 * 9 7 5 11 11 H 1.48501 * 109.47154 * 119.99472 * 9 7 5 12 12 H 1.48496 * 109.47247 * 239.99063 * 9 7 5 13 13 N 1.46904 * 109.47110 * 301.35745 * 3 2 1 14 14 C 1.46843 * 110.99753 * 177.92390 * 13 3 2 15 15 C 1.53038 * 109.52111 * 185.83770 * 14 13 3 16 16 C 1.53116 * 109.28089 * 300.81806 * 15 14 13 17 17 H 1.08999 * 109.51940 * 297.74971 * 16 15 14 18 18 N 1.46895 * 109.52777 * 177.55793 * 16 15 14 19 19 C 1.46847 * 110.99826 * 78.67238 * 18 16 15 20 20 C 1.53039 * 109.52288 * 174.16124 * 19 18 16 21 21 C 1.53123 * 109.27818 * 59.18410 * 20 19 18 22 22 C 1.53118 * 109.15694 * 302.34536 * 21 20 19 23 23 C 1.46848 * 111.00150 * 314.47053 * 18 16 15 24 24 C 1.53122 * 109.16134 * 57.65158 * 16 15 14 25 25 F 1.39897 * 109.50005 * 62.28729 * 24 16 15 26 26 F 1.39899 * 109.50590 * 182.40689 * 24 16 15 27 27 C 1.46851 * 110.99783 * 302.12807 * 13 3 2 28 28 H 1.09009 * 109.46981 * 294.87069 * 1 2 3 29 29 H 1.09000 * 109.47221 * 174.87976 * 1 2 3 30 30 H 1.08995 * 109.47320 * 54.87142 * 1 2 3 31 31 H 1.08992 * 109.47494 * 119.99746 * 2 1 3 32 32 H 1.09005 * 109.46973 * 240.00152 * 2 1 3 33 33 H 0.97002 * 120.00111 * 180.02562 * 8 7 5 34 34 H 1.09008 * 109.46322 * 305.84883 * 14 13 3 35 35 H 1.08995 * 109.47270 * 65.82236 * 14 13 3 36 36 H 1.09004 * 109.50458 * 60.75763 * 15 14 13 37 37 H 1.08999 * 109.50613 * 180.87395 * 15 14 13 38 38 H 1.08998 * 109.47094 * 294.18024 * 19 18 16 39 39 H 1.09002 * 109.46263 * 54.14730 * 19 18 16 40 40 H 1.08998 * 109.50582 * 299.24291 * 20 19 18 41 41 H 1.09005 * 109.53492 * 179.14020 * 20 19 18 42 42 H 1.09002 * 109.52162 * 182.43834 * 21 20 19 43 43 H 1.08996 * 109.57372 * 62.27856 * 21 20 19 44 44 H 1.09002 * 109.50378 * 297.71416 * 22 21 20 45 45 H 1.08997 * 109.53613 * 177.61694 * 22 21 20 46 46 H 1.09004 * 109.45765 * 305.85101 * 23 18 16 47 47 H 1.08997 * 109.46594 * 65.81404 * 23 18 16 48 48 H 1.09000 * 109.46229 * 294.18011 * 27 13 3 49 49 H 1.09003 * 109.45948 * 54.14676 * 27 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1297 1.4427 -0.0243 5 6 1.5652 2.1431 1.2469 6 1 0.9424 3.0220 1.1687 7 6 1.9262 1.6623 2.4876 8 7 2.6845 0.5920 2.5830 9 14 1.3383 2.5312 4.0333 10 1 0.5054 3.7015 3.6569 11 1 0.5313 1.5917 4.8526 12 1 2.5113 2.9912 4.8191 13 7 1.5237 2.1444 -1.1827 14 6 1.9533 3.5486 -1.1905 15 6 1.2811 4.2826 -2.3530 16 6 1.6669 3.6041 -3.6702 17 1 2.7452 3.6739 -3.8137 18 7 0.9781 4.2682 -4.7848 19 6 1.6490 5.5240 -5.1447 20 6 0.9949 6.1127 -6.3967 21 6 -0.4895 6.3665 -6.1199 22 6 -1.1543 5.0525 -5.7004 23 6 -0.4379 4.4945 -4.4686 24 6 1.2520 2.1311 -3.6172 25 9 -0.1377 2.0419 -3.4831 26 9 1.6504 1.4909 -4.7956 27 6 1.9251 1.4595 -2.4181 28 1 -0.3633 0.4322 0.9324 29 1 -0.3634 -1.0236 -0.0917 30 1 -0.3634 0.5913 -0.8404 31 1 1.8934 -0.5137 0.8899 32 1 1.8933 -0.5138 -0.8900 33 1 2.9381 0.2535 3.4559 34 1 1.6691 4.0206 -0.2500 35 1 3.0358 3.5967 -1.3082 36 1 0.1987 4.2470 -2.2287 37 1 1.6121 5.3210 -2.3679 38 1 1.5599 6.2324 -4.3211 39 1 2.7029 5.3288 -5.3431 40 1 1.0959 5.4106 -7.2244 41 1 1.4828 7.0526 -6.6552 42 1 -0.9688 6.7454 -7.0226 43 1 -0.5916 7.0984 -5.3186 44 1 -1.0871 4.3337 -6.5171 45 1 -2.2019 5.2343 -5.4609 46 1 -0.8998 3.5516 -4.1759 47 1 -0.5173 5.2077 -3.6481 48 1 3.0078 1.5172 -2.5300 49 1 1.6204 0.4140 -2.3691 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255177342.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:36:26 Heat of formation + Delta-G solvation = -108.288604 kcal Electronic energy + Delta-G solvation = -29589.747806 eV Core-core repulsion = 25607.454566 eV Total energy + Delta-G solvation = -3982.293240 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.202 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -49.89640 -47.89181 -40.60443 -39.26969 -36.34561 -34.54439 -33.09605 -31.76964 -31.24426 -30.75361 -28.20946 -26.06661 -25.20869 -24.14252 -23.91427 -23.26270 -21.55498 -20.81296 -20.23854 -18.55876 -18.06386 -17.82108 -17.39292 -16.87890 -16.69373 -16.08967 -15.80659 -15.60284 -15.39716 -15.06764 -14.83399 -14.71270 -14.53748 -14.36271 -14.18761 -14.16480 -14.05327 -13.56207 -13.49796 -13.24782 -13.04061 -12.85932 -12.81323 -12.67250 -12.47989 -12.37965 -12.15072 -12.06313 -11.91137 -11.64857 -11.57574 -11.52809 -11.31899 -11.25185 -10.79668 -10.74534 -10.46339 -9.27940 -9.01830 -8.08287 -6.17546 1.41457 1.45423 1.54759 2.41457 2.56948 2.80477 3.05173 3.17111 3.23526 3.52742 3.66678 3.92153 3.96732 4.08221 4.09428 4.21569 4.25463 4.35153 4.42486 4.47605 4.52653 4.60535 4.62894 4.66950 4.71917 4.74242 4.78366 4.86895 4.88575 5.01999 5.05026 5.07584 5.10692 5.18215 5.24989 5.27596 5.34960 5.41248 5.47333 5.50102 5.70778 5.75757 5.83943 5.96526 6.12023 6.27679 6.32783 6.61454 6.93358 7.49921 8.97659 Molecular weight = 316.20amu Principal moments of inertia in cm(-1) A = 0.020227 B = 0.004058 C = 0.003743 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1383.931619 B = 6897.791562 C = 7479.594941 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.110 4.110 3 C 0.227 3.773 4 H -0.032 1.032 5 C -0.501 4.501 6 H 0.060 0.940 7 C 0.017 3.983 8 N -0.918 5.918 9 Si 0.951 3.049 10 H -0.267 1.267 11 H -0.285 1.285 12 H -0.284 1.284 13 N -0.523 5.523 14 C 0.062 3.938 15 C -0.131 4.131 16 C 0.055 3.945 17 H 0.110 0.890 18 N -0.533 5.533 19 C 0.051 3.949 20 C -0.111 4.111 21 C -0.119 4.119 22 C -0.113 4.113 23 C 0.029 3.971 24 C 0.311 3.689 25 F -0.193 7.193 26 F -0.202 7.202 27 C 0.014 3.986 28 H 0.034 0.966 29 H 0.035 0.965 30 H 0.051 0.949 31 H 0.066 0.934 32 H 0.027 0.973 33 H 0.260 0.740 34 H 0.078 0.922 35 H 0.026 0.974 36 H 0.074 0.926 37 H 0.092 0.908 38 H 0.040 0.960 39 H 0.079 0.921 40 H 0.063 0.937 41 H 0.084 0.916 42 H 0.075 0.925 43 H 0.061 0.939 44 H 0.060 0.940 45 H 0.074 0.926 46 H 0.082 0.918 47 H 0.038 0.962 48 H 0.056 0.944 49 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.175 10.238 -15.889 19.166 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.149 4.149 3 C 0.120 3.880 4 H -0.015 1.015 5 C -0.539 4.539 6 H 0.078 0.922 7 C -0.181 4.181 8 N -0.558 5.558 9 Si 0.777 3.223 10 H -0.191 1.191 11 H -0.211 1.211 12 H -0.210 1.210 13 N -0.248 5.248 14 C -0.067 4.067 15 C -0.170 4.170 16 C -0.055 4.055 17 H 0.128 0.872 18 N -0.257 5.257 19 C -0.076 4.076 20 C -0.149 4.149 21 C -0.156 4.156 22 C -0.151 4.151 23 C -0.099 4.099 24 C 0.274 3.726 25 F -0.174 7.174 26 F -0.183 7.183 27 C -0.116 4.116 28 H 0.053 0.947 29 H 0.054 0.946 30 H 0.070 0.930 31 H 0.084 0.916 32 H 0.046 0.954 33 H 0.069 0.931 34 H 0.096 0.904 35 H 0.044 0.956 36 H 0.093 0.907 37 H 0.111 0.889 38 H 0.058 0.942 39 H 0.097 0.903 40 H 0.082 0.918 41 H 0.102 0.898 42 H 0.094 0.906 43 H 0.079 0.921 44 H 0.079 0.921 45 H 0.092 0.908 46 H 0.100 0.900 47 H 0.057 0.943 48 H 0.074 0.926 49 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -3.611 9.812 -16.186 19.269 hybrid contribution 0.749 0.281 1.769 1.942 sum -2.863 10.093 -14.417 17.830 Atomic orbital electron populations 1.21326 0.95867 0.98604 1.00895 1.21499 0.96337 0.97566 0.99471 1.19051 0.90686 0.91535 0.86701 1.01463 1.21239 1.30615 1.11774 0.90315 0.92224 1.25554 0.95364 0.95654 1.01561 1.70004 1.37553 1.23772 1.24502 0.85612 0.77942 0.78747 0.79971 1.19140 1.21113 1.21012 1.61915 1.60117 1.02066 1.00693 1.22010 0.96511 0.88957 0.99225 1.22171 1.02240 0.99815 0.92801 1.22596 1.00667 0.90665 0.91528 0.87191 1.62103 1.02880 1.25033 1.35668 1.22224 0.98502 0.89052 0.97791 1.21564 0.95651 1.00900 0.96800 1.21579 0.95641 0.96683 1.01706 1.21566 0.99033 0.97388 0.97082 1.22637 0.87967 1.01754 0.97512 1.21046 0.76223 0.93465 0.81907 1.92817 1.31965 1.96716 1.95901 1.92959 1.90512 1.84040 1.50768 1.22972 0.98483 1.00169 0.89973 0.94676 0.94557 0.92982 0.91572 0.95401 0.93102 0.90380 0.95588 0.90691 0.88934 0.94216 0.90299 0.91777 0.89782 0.90647 0.92055 0.92126 0.90760 0.89951 0.94338 0.92553 0.89142 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.74 9.49 71.98 0.68 -4.06 16 2 C -0.11 -5.16 5.04 30.59 0.15 -5.01 16 3 C 0.23 10.84 1.76 44.17 0.08 10.91 16 4 H -0.03 -1.72 8.14 -2.39 -0.02 -1.74 16 5 C -0.50 -25.81 6.75 25.60 0.17 -25.63 16 6 H 0.06 3.08 6.55 -2.91 -0.02 3.06 16 7 C 0.02 0.92 5.30 84.65 0.45 1.37 16 8 N -0.92 -51.03 11.31 21.44 0.24 -50.79 16 9 Si 0.95 42.38 29.54 68.60 2.03 44.41 16 10 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 11 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 12 H -0.28 -12.51 7.11 99.48 0.71 -11.81 16 13 N -0.52 -20.81 3.54 -875.48 -3.10 -23.91 16 14 C 0.06 2.17 5.23 86.33 0.45 2.62 16 15 C -0.13 -3.65 4.38 30.65 0.13 -3.52 16 16 C 0.06 1.50 1.95 45.00 0.09 1.59 16 17 H 0.11 2.77 7.83 -2.39 -0.02 2.75 16 18 N -0.53 -12.98 4.51 -870.66 -3.92 -16.91 16 19 C 0.05 0.98 5.25 86.33 0.45 1.43 16 20 C -0.11 -1.76 6.09 30.65 0.19 -1.58 16 21 C -0.12 -1.86 6.00 30.67 0.18 -1.67 16 22 C -0.11 -2.19 6.09 30.64 0.19 -2.01 16 23 C 0.03 0.69 4.19 86.32 0.36 1.05 16 24 C 0.31 9.96 1.80 30.65 0.06 10.01 16 25 F -0.19 -6.73 13.44 44.97 0.60 -6.12 16 26 F -0.20 -6.64 17.03 44.97 0.77 -5.88 16 27 C 0.01 0.49 4.67 86.32 0.40 0.90 16 28 H 0.03 1.63 7.44 -2.38 -0.02 1.61 16 29 H 0.04 1.39 8.14 -2.39 -0.02 1.37 16 30 H 0.05 2.20 7.41 -2.39 -0.02 2.18 16 31 H 0.07 3.50 6.03 -2.39 -0.01 3.48 16 32 H 0.03 1.19 6.32 -2.38 -0.02 1.18 16 33 H 0.26 13.85 8.31 -92.71 -0.77 13.08 16 34 H 0.08 3.04 6.16 -2.38 -0.01 3.02 16 35 H 0.03 0.90 8.14 -2.39 -0.02 0.88 16 36 H 0.07 2.27 6.08 -2.38 -0.01 2.26 16 37 H 0.09 2.17 7.29 -2.39 -0.02 2.15 16 38 H 0.04 0.73 7.29 -2.39 -0.02 0.72 16 39 H 0.08 1.41 7.94 -2.39 -0.02 1.39 16 40 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 41 H 0.08 1.03 8.14 -2.38 -0.02 1.01 16 42 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 43 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 44 H 0.06 1.27 8.14 -2.39 -0.02 1.26 16 45 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 46 H 0.08 2.36 5.02 -2.38 -0.01 2.35 16 47 H 0.04 0.92 6.56 -2.39 -0.02 0.91 16 48 H 0.06 1.92 8.14 -2.39 -0.02 1.91 16 49 H 0.09 3.35 5.98 -2.39 -0.01 3.34 16 Total: -1.00 -56.60 358.31 1.58 -55.02 By element: Atomic # 1 Polarization: 16.85 SS G_CDS: 0.93 Total: 17.77 kcal Atomic # 6 Polarization: -17.63 SS G_CDS: 4.04 Total: -13.59 kcal Atomic # 7 Polarization: -84.82 SS G_CDS: -6.78 Total: -91.61 kcal Atomic # 9 Polarization: -13.37 SS G_CDS: 1.37 Total: -12.00 kcal Atomic # 14 Polarization: 42.38 SS G_CDS: 2.03 Total: 44.41 kcal Total: -56.60 1.58 -55.02 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255177342.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.268 kcal (2) G-P(sol) polarization free energy of solvation -56.604 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.872 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.583 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.021 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.289 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds