Wall clock time and date at job start Tue Mar 31 2020 12:09:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00238 * 2 1 4 4 H 1.48501 * 109.47474 * 270.00343 * 3 2 1 5 5 H 1.48507 * 109.46754 * 30.00076 * 3 2 1 6 6 H 1.48498 * 109.47278 * 149.99907 * 3 2 1 7 7 C 1.37879 * 120.00338 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00381 * 180.27722 * 7 2 1 9 9 C 1.50706 * 119.99394 * 0.02562 * 7 2 1 10 10 C 1.52999 * 109.46573 * 179.97438 * 9 7 2 11 11 C 1.53006 * 109.46997 * 180.02562 * 10 9 7 12 12 N 1.46896 * 109.47501 * 180.02562 * 11 10 9 13 13 C 1.46895 * 111.00306 * 179.97438 * 12 11 10 14 14 H 1.09001 * 109.02809 * 36.04216 * 13 12 11 15 15 C 1.54524 * 109.04178 * 277.15976 * 13 12 11 16 16 C 1.50537 * 108.86816 * 162.20942 * 15 13 12 17 17 C 1.53919 * 112.94243 * 91.75197 * 16 15 13 18 18 N 1.47944 * 113.32946 * 317.75098 * 17 16 15 19 19 C 1.46900 * 110.99841 * 192.18782 * 18 17 16 20 20 C 1.50695 * 109.47181 * 317.41103 * 19 18 17 21 21 C 1.38234 * 119.99699 * 269.72359 * 20 19 18 22 22 C 1.38246 * 119.99648 * 179.81323 * 21 20 19 23 23 C 1.38232 * 119.99585 * 0.39689 * 22 21 20 24 24 C 1.38230 * 120.00575 * 359.85624 * 23 22 21 25 25 C 1.38231 * 120.00089 * 90.00222 * 20 19 18 26 26 C 1.44305 * 113.64483 * 318.14057 * 18 17 16 27 27 C 1.45878 * 109.04338 * 155.00139 * 13 12 11 28 28 H 0.96996 * 119.99730 * 359.97438 * 1 2 3 29 29 H 1.09000 * 109.47161 * 299.99886 * 9 7 2 30 30 H 1.09001 * 109.46740 * 60.00029 * 9 7 2 31 31 H 1.09000 * 109.47486 * 299.99934 * 10 9 7 32 32 H 1.09001 * 109.47362 * 60.00657 * 10 9 7 33 33 H 1.09000 * 109.46866 * 300.00212 * 11 10 9 34 34 H 1.08996 * 109.47261 * 59.99820 * 11 10 9 35 35 H 1.00907 * 110.99847 * 56.04182 * 12 11 10 36 36 H 1.08998 * 109.57241 * 282.02705 * 15 13 12 37 37 H 1.09004 * 109.56820 * 42.39250 * 15 13 12 38 38 H 1.09004 * 108.78771 * 330.85268 * 16 15 13 39 39 H 1.09006 * 108.70006 * 212.58240 * 16 15 13 40 40 H 1.08999 * 108.70897 * 196.75549 * 17 16 15 41 41 H 1.09002 * 108.71043 * 78.74495 * 17 16 15 42 42 H 1.08998 * 109.46722 * 77.41390 * 19 18 17 43 43 H 1.08996 * 109.47039 * 197.40750 * 19 18 17 44 44 H 1.07999 * 120.00376 * 0.02562 * 21 20 19 45 45 H 1.07994 * 119.99497 * 180.23453 * 22 21 20 46 46 H 1.08001 * 119.99386 * 179.83345 * 23 22 21 47 47 H 1.07998 * 120.00310 * 179.97438 * 24 23 22 48 48 H 1.07999 * 120.00200 * 359.97438 * 25 20 19 49 49 H 1.09001 * 109.69384 * 335.69807 * 26 18 17 50 50 H 1.08996 * 109.73216 * 215.12655 * 26 18 17 51 51 H 1.08998 * 108.83917 * 302.87741 * 27 13 12 52 52 H 1.08999 * 108.84378 * 61.23385 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 0.0040 9 6 1.2510 -2.4991 -0.0017 10 6 2.2453 -3.6620 -0.0027 11 6 1.4803 -4.9871 -0.0046 12 7 2.4348 -6.1037 -0.0050 13 6 1.7346 -7.3950 -0.0061 14 1 0.8330 -7.3098 -0.6127 15 6 1.3337 -7.7523 1.4428 16 6 0.2652 -8.8121 1.4050 17 6 0.8350 -10.2408 1.4609 18 7 2.0330 -10.4274 0.6132 19 6 2.3624 -11.8522 0.4736 20 6 2.2178 -12.5344 1.8095 21 6 3.2994 -12.6115 2.6668 22 6 3.1657 -13.2340 3.8940 23 6 1.9527 -13.7864 4.2601 24 6 0.8725 -13.7140 3.4005 25 6 1.0052 -13.0882 2.1751 26 6 1.9333 -9.7907 -0.6780 27 6 2.6065 -8.4088 -0.5892 28 1 -0.4849 0.8400 0.0004 29 1 0.6240 -2.5575 0.8880 30 1 0.6247 -2.5562 -0.8920 31 1 2.8720 -3.6035 -0.8927 32 1 2.8719 -3.6051 0.8873 33 1 0.8533 -5.0459 0.8851 34 1 0.8539 -5.0438 -0.8948 35 1 3.0692 -6.0373 0.7770 36 1 2.2037 -8.1300 1.9798 37 1 0.9496 -6.8643 1.9449 38 1 -0.3092 -8.6988 0.4855 39 1 -0.4017 -8.6666 2.2549 40 1 0.0634 -10.9380 1.1343 41 1 1.0975 -10.4724 2.4932 42 1 1.6848 -12.3130 -0.2450 43 1 3.3891 -11.9550 0.1223 44 1 4.2480 -12.1824 2.3795 45 1 4.0097 -13.2908 4.5653 46 1 1.8490 -14.2751 5.2176 47 1 -0.0751 -14.1460 3.6864 48 1 0.1613 -13.0315 1.5035 49 1 0.8842 -9.6716 -0.9487 50 1 2.4394 -10.3984 -1.4280 51 1 2.8933 -8.0919 -1.5919 52 1 3.5053 -8.4936 0.0216 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255385093.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:09:37 Heat of formation + Delta-G solvation = 12.657148 kcal Electronic energy + Delta-G solvation = -25982.065885 eV Core-core repulsion = 22559.246777 eV Total energy + Delta-G solvation = -3422.819108 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.22801 -39.01379 -36.67470 -34.35206 -32.96825 -32.37718 -31.55188 -31.21045 -29.80265 -27.15254 -26.13192 -24.85959 -23.92238 -22.89476 -22.11000 -21.55113 -20.69484 -19.83781 -19.68437 -17.12119 -16.44497 -16.26914 -16.01886 -15.74471 -15.27525 -15.11069 -14.65998 -14.42260 -14.21602 -14.12329 -13.72988 -13.60360 -13.30730 -13.12859 -12.86829 -12.72143 -12.47106 -12.17997 -11.98972 -11.74503 -11.58931 -11.38394 -11.26826 -11.12739 -11.06826 -10.89407 -10.73639 -10.56536 -10.51434 -10.47413 -10.36551 -9.63229 -9.27079 -9.22581 -9.11457 -9.00200 -8.34812 -8.30327 -8.01041 -5.95599 -3.97371 0.99387 1.08823 3.35132 3.35852 3.40896 3.44813 3.82926 4.37347 4.40702 4.50531 4.53470 4.60816 4.68090 4.75585 4.81295 4.93955 4.99412 5.04277 5.16756 5.17781 5.30969 5.33886 5.40090 5.43318 5.49790 5.55584 5.61041 5.67261 5.68946 5.73512 5.86333 5.90011 5.94183 6.01127 6.12416 6.16237 6.19658 6.24867 6.29472 6.33281 6.41918 6.45392 6.66757 6.80146 6.84567 6.87761 7.05721 7.20323 7.47885 7.73178 7.76290 7.89613 8.05385 8.48980 9.09979 9.66309 11.15863 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.028816 B = 0.001881 C = 0.001861 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 971.434718 B =14880.055415 C =15045.392417 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.054 3.946 3 Si 0.892 3.108 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.274 1.274 7 C -0.517 4.517 8 H 0.055 0.945 9 C 0.022 3.978 10 C -0.107 4.107 11 C 0.060 3.940 12 N -0.688 5.688 13 C 0.092 3.908 14 H 0.066 0.934 15 C -0.142 4.142 16 C -0.117 4.117 17 C 0.066 3.934 18 N -0.539 5.539 19 C 0.097 3.903 20 C -0.082 4.082 21 C -0.099 4.099 22 C -0.121 4.121 23 C -0.122 4.122 24 C -0.122 4.122 25 C -0.114 4.114 26 C 0.064 3.936 27 C -0.101 4.101 28 H 0.260 0.740 29 H 0.013 0.987 30 H 0.015 0.985 31 H 0.055 0.945 32 H 0.044 0.956 33 H 0.023 0.977 34 H 0.064 0.936 35 H 0.337 0.663 36 H 0.073 0.927 37 H 0.060 0.940 38 H 0.058 0.942 39 H 0.064 0.936 40 H 0.029 0.971 41 H 0.071 0.929 42 H 0.041 0.959 43 H 0.084 0.916 44 H 0.124 0.876 45 H 0.121 0.879 46 H 0.119 0.881 47 H 0.120 0.880 48 H 0.117 0.883 49 H 0.043 0.957 50 H 0.068 0.932 51 H 0.068 0.932 52 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.721 -31.657 4.743 32.126 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.146 4.146 3 Si 0.720 3.280 4 H -0.207 1.207 5 H -0.213 1.213 6 H -0.199 1.199 7 C -0.556 4.556 8 H 0.073 0.927 9 C -0.016 4.016 10 C -0.145 4.145 11 C -0.069 4.069 12 N -0.317 5.317 13 C -0.018 4.018 14 H 0.084 0.916 15 C -0.181 4.181 16 C -0.155 4.155 17 C -0.060 4.060 18 N -0.264 5.264 19 C -0.029 4.029 20 C -0.082 4.082 21 C -0.118 4.118 22 C -0.139 4.139 23 C -0.140 4.140 24 C -0.140 4.140 25 C -0.133 4.133 26 C -0.065 4.065 27 C -0.140 4.140 28 H 0.069 0.931 29 H 0.031 0.969 30 H 0.034 0.966 31 H 0.074 0.926 32 H 0.063 0.937 33 H 0.041 0.959 34 H 0.082 0.918 35 H 0.155 0.845 36 H 0.092 0.908 37 H 0.079 0.921 38 H 0.076 0.924 39 H 0.083 0.917 40 H 0.048 0.952 41 H 0.090 0.910 42 H 0.059 0.941 43 H 0.102 0.898 44 H 0.142 0.858 45 H 0.139 0.861 46 H 0.137 0.863 47 H 0.138 0.862 48 H 0.135 0.865 49 H 0.061 0.939 50 H 0.086 0.914 51 H 0.087 0.913 52 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 3.015 -31.275 4.256 31.707 hybrid contribution -0.725 0.555 0.629 1.109 sum 2.290 -30.720 4.885 31.190 Atomic orbital electron populations 1.69969 1.06051 1.26490 1.51148 1.25039 0.94858 0.99261 0.95458 0.86594 0.79837 0.83485 0.78083 1.20674 1.21292 1.19892 1.21273 0.93066 0.91084 1.50157 0.92672 1.19066 0.94040 0.91431 0.97039 1.21622 0.99147 0.93110 1.00631 1.22126 0.94204 0.90876 0.99652 1.60784 1.20051 1.01252 1.49655 1.20559 0.96728 0.89953 0.94527 0.91622 1.22036 0.99416 0.98026 0.98628 1.21328 0.98292 0.93878 1.02017 1.22436 0.89877 0.95966 0.97770 1.60907 1.37841 1.11240 1.16443 1.21137 1.01617 0.87260 0.92925 1.19797 0.93776 0.98203 0.96432 1.21061 0.98677 0.98266 0.93747 1.21183 0.97678 0.98386 0.96675 1.21161 0.93296 0.99991 0.99572 1.21112 0.98807 0.99715 0.94352 1.21085 0.96897 0.98395 0.96927 1.21796 0.99620 0.95776 0.89289 1.20415 0.99467 0.92397 1.01688 0.93088 0.96868 0.96644 0.92646 0.93728 0.95853 0.91779 0.84506 0.90839 0.92119 0.92373 0.91689 0.95231 0.91026 0.94125 0.89791 0.85814 0.86082 0.86251 0.86215 0.86486 0.93870 0.91382 0.91317 0.91141 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.49 13.29 55.43 0.74 -26.75 16 2 C 0.05 1.60 5.46 -17.82 -0.10 1.50 16 3 Si 0.89 22.09 29.54 -169.99 -5.02 17.07 16 4 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 5 H -0.29 -7.02 7.11 56.52 0.40 -6.61 16 6 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 7 C -0.52 -15.06 9.11 -34.44 -0.31 -15.37 16 8 H 0.06 1.56 7.74 -52.49 -0.41 1.16 16 9 C 0.02 0.58 4.97 -27.88 -0.14 0.44 16 10 C -0.11 -2.29 5.41 -26.73 -0.14 -2.43 16 11 C 0.06 1.07 5.45 -3.82 -0.02 1.05 16 12 N -0.69 -10.30 6.17 -109.48 -0.67 -10.98 16 13 C 0.09 1.15 2.02 -70.29 -0.14 1.01 16 14 H 0.07 0.88 7.23 -51.93 -0.38 0.50 16 15 C -0.14 -1.66 4.94 -27.16 -0.13 -1.79 16 16 C -0.12 -1.19 5.27 -27.48 -0.14 -1.33 16 17 C 0.07 0.62 4.11 -2.77 -0.01 0.61 16 18 N -0.54 -4.89 4.16 -236.08 -0.98 -5.87 16 19 C 0.10 0.76 5.10 -4.98 -0.03 0.73 16 20 C -0.08 -0.66 4.05 -104.63 -0.42 -1.09 16 21 C -0.10 -0.79 9.70 -39.58 -0.38 -1.18 16 22 C -0.12 -0.90 10.05 -39.58 -0.40 -1.30 16 23 C -0.12 -0.87 10.05 -39.59 -0.40 -1.27 16 24 C -0.12 -0.88 10.05 -39.59 -0.40 -1.28 16 25 C -0.11 -0.88 8.03 -39.58 -0.32 -1.20 16 26 C 0.06 0.59 5.37 -4.70 -0.03 0.56 16 27 C -0.10 -1.11 4.89 -29.59 -0.14 -1.25 16 28 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 29 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.05 1.21 8.14 -51.93 -0.42 0.78 16 32 H 0.04 0.93 8.14 -51.93 -0.42 0.51 16 33 H 0.02 0.42 7.15 -51.93 -0.37 0.05 16 34 H 0.06 1.18 8.05 -51.93 -0.42 0.76 16 35 H 0.34 4.88 8.50 -39.29 -0.33 4.54 16 36 H 0.07 0.89 7.79 -51.93 -0.40 0.48 16 37 H 0.06 0.79 7.07 -51.93 -0.37 0.42 16 38 H 0.06 0.60 6.66 -51.93 -0.35 0.26 16 39 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 40 H 0.03 0.26 6.81 -51.93 -0.35 -0.09 16 41 H 0.07 0.73 7.02 -51.93 -0.36 0.37 16 42 H 0.04 0.30 8.01 -51.93 -0.42 -0.12 16 43 H 0.08 0.61 8.08 -51.93 -0.42 0.19 16 44 H 0.12 0.89 8.06 -52.49 -0.42 0.47 16 45 H 0.12 0.69 8.06 -52.49 -0.42 0.27 16 46 H 0.12 0.63 8.06 -52.49 -0.42 0.21 16 47 H 0.12 0.66 8.06 -52.49 -0.42 0.24 16 48 H 0.12 0.79 7.44 -52.49 -0.39 0.40 16 49 H 0.04 0.41 6.79 -51.93 -0.35 0.06 16 50 H 0.07 0.55 7.61 -51.93 -0.40 0.15 16 51 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 52 H 0.07 0.82 8.08 -51.93 -0.42 0.40 16 LS Contribution 397.92 15.07 6.00 6.00 Total: -1.00 -30.63 397.92 -13.10 -43.73 By element: Atomic # 1 Polarization: 9.87 SS G_CDS: -9.50 Total: 0.38 kcal Atomic # 6 Polarization: -19.91 SS G_CDS: -3.66 Total: -23.58 kcal Atomic # 7 Polarization: -42.68 SS G_CDS: -0.92 Total: -43.60 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -5.02 Total: 17.07 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -30.63 -13.10 -43.73 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255385093.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.390 kcal (2) G-P(sol) polarization free energy of solvation -30.629 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.761 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -13.104 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.733 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.657 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds