Wall clock time and date at job start Tue Mar 31 2020 12:09:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00238 * 2 1 4 4 H 1.48501 * 109.47474 * 270.00343 * 3 2 1 5 5 H 1.48507 * 109.46754 * 30.00076 * 3 2 1 6 6 H 1.48498 * 109.47278 * 149.99907 * 3 2 1 7 7 C 1.37879 * 120.00338 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00381 * 180.27722 * 7 2 1 9 9 C 1.50706 * 119.99394 * 0.02562 * 7 2 1 10 10 C 1.52999 * 109.46573 * 179.97438 * 9 7 2 11 11 C 1.53006 * 109.46997 * 180.02562 * 10 9 7 12 12 N 1.46896 * 109.47501 * 180.02562 * 11 10 9 13 13 C 1.46895 * 111.00306 * 179.97438 * 12 11 10 14 14 H 1.09001 * 109.02809 * 36.04216 * 13 12 11 15 15 C 1.54524 * 109.04178 * 277.15976 * 13 12 11 16 16 C 1.50537 * 108.86816 * 162.20942 * 15 13 12 17 17 C 1.53919 * 112.94243 * 91.75197 * 16 15 13 18 18 N 1.47944 * 113.32946 * 317.75098 * 17 16 15 19 19 C 1.46900 * 110.99841 * 192.18782 * 18 17 16 20 20 C 1.50695 * 109.47181 * 317.41103 * 19 18 17 21 21 C 1.38234 * 119.99699 * 269.72359 * 20 19 18 22 22 C 1.38246 * 119.99648 * 179.81323 * 21 20 19 23 23 C 1.38232 * 119.99585 * 0.39689 * 22 21 20 24 24 C 1.38230 * 120.00575 * 359.85624 * 23 22 21 25 25 C 1.38231 * 120.00089 * 90.00222 * 20 19 18 26 26 C 1.44305 * 113.64483 * 318.14057 * 18 17 16 27 27 C 1.45878 * 109.04338 * 155.00139 * 13 12 11 28 28 H 0.96996 * 119.99730 * 359.97438 * 1 2 3 29 29 H 1.09000 * 109.47161 * 299.99886 * 9 7 2 30 30 H 1.09001 * 109.46740 * 60.00029 * 9 7 2 31 31 H 1.09000 * 109.47486 * 299.99934 * 10 9 7 32 32 H 1.09001 * 109.47362 * 60.00657 * 10 9 7 33 33 H 1.09000 * 109.46866 * 300.00212 * 11 10 9 34 34 H 1.08996 * 109.47261 * 59.99820 * 11 10 9 35 35 H 1.00907 * 110.99847 * 56.04182 * 12 11 10 36 36 H 1.08998 * 109.57241 * 282.02705 * 15 13 12 37 37 H 1.09004 * 109.56820 * 42.39250 * 15 13 12 38 38 H 1.09004 * 108.78771 * 330.85268 * 16 15 13 39 39 H 1.09006 * 108.70006 * 212.58240 * 16 15 13 40 40 H 1.08999 * 108.70897 * 196.75549 * 17 16 15 41 41 H 1.09002 * 108.71043 * 78.74495 * 17 16 15 42 42 H 1.08998 * 109.46722 * 77.41390 * 19 18 17 43 43 H 1.08996 * 109.47039 * 197.40750 * 19 18 17 44 44 H 1.07999 * 120.00376 * 0.02562 * 21 20 19 45 45 H 1.07994 * 119.99497 * 180.23453 * 22 21 20 46 46 H 1.08001 * 119.99386 * 179.83345 * 23 22 21 47 47 H 1.07998 * 120.00310 * 179.97438 * 24 23 22 48 48 H 1.07999 * 120.00200 * 359.97438 * 25 20 19 49 49 H 1.09001 * 109.69384 * 335.69807 * 26 18 17 50 50 H 1.08996 * 109.73216 * 215.12655 * 26 18 17 51 51 H 1.08998 * 108.83917 * 302.87741 * 27 13 12 52 52 H 1.08999 * 108.84378 * 61.23385 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 0.0040 9 6 1.2510 -2.4991 -0.0017 10 6 2.2453 -3.6620 -0.0027 11 6 1.4803 -4.9871 -0.0046 12 7 2.4348 -6.1037 -0.0050 13 6 1.7346 -7.3950 -0.0061 14 1 0.8330 -7.3098 -0.6127 15 6 1.3337 -7.7523 1.4428 16 6 0.2652 -8.8121 1.4050 17 6 0.8350 -10.2408 1.4609 18 7 2.0330 -10.4274 0.6132 19 6 2.3624 -11.8522 0.4736 20 6 2.2178 -12.5344 1.8095 21 6 3.2994 -12.6115 2.6668 22 6 3.1657 -13.2340 3.8940 23 6 1.9527 -13.7864 4.2601 24 6 0.8725 -13.7140 3.4005 25 6 1.0052 -13.0882 2.1751 26 6 1.9333 -9.7907 -0.6780 27 6 2.6065 -8.4088 -0.5892 28 1 -0.4849 0.8400 0.0004 29 1 0.6240 -2.5575 0.8880 30 1 0.6247 -2.5562 -0.8920 31 1 2.8720 -3.6035 -0.8927 32 1 2.8719 -3.6051 0.8873 33 1 0.8533 -5.0459 0.8851 34 1 0.8539 -5.0438 -0.8948 35 1 3.0692 -6.0373 0.7770 36 1 2.2037 -8.1300 1.9798 37 1 0.9496 -6.8643 1.9449 38 1 -0.3092 -8.6988 0.4855 39 1 -0.4017 -8.6666 2.2549 40 1 0.0634 -10.9380 1.1343 41 1 1.0975 -10.4724 2.4932 42 1 1.6848 -12.3130 -0.2450 43 1 3.3891 -11.9550 0.1223 44 1 4.2480 -12.1824 2.3795 45 1 4.0097 -13.2908 4.5653 46 1 1.8490 -14.2751 5.2176 47 1 -0.0751 -14.1460 3.6864 48 1 0.1613 -13.0315 1.5035 49 1 0.8842 -9.6716 -0.9487 50 1 2.4394 -10.3984 -1.4280 51 1 2.8933 -8.0919 -1.5919 52 1 3.5053 -8.4936 0.0216 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255385093.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:09:36 Heat of formation + Delta-G solvation = -3.963055 kcal Electronic energy + Delta-G solvation = -25982.786591 eV Core-core repulsion = 22559.246777 eV Total energy + Delta-G solvation = -3423.539814 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.92754 -39.78126 -37.73787 -35.96882 -34.47976 -33.37469 -32.68750 -31.75941 -31.10824 -28.25518 -27.49974 -25.85867 -24.98805 -23.73794 -23.42583 -22.17159 -22.14194 -21.12887 -20.50742 -18.48722 -17.70663 -17.20236 -16.87112 -16.58140 -16.50197 -16.27163 -15.85408 -15.51550 -15.39099 -15.23069 -14.59137 -14.36360 -14.22909 -14.19903 -13.99784 -13.65667 -13.51743 -13.38848 -13.31413 -13.15984 -12.79458 -12.63407 -12.47311 -12.34736 -12.13183 -11.99845 -11.90568 -11.79521 -11.69763 -11.55618 -11.46311 -11.38488 -11.32790 -11.00349 -10.55553 -9.77392 -9.68098 -9.27128 -9.02768 -8.20211 -6.31334 0.44235 0.54062 1.39764 1.41595 1.52781 2.41012 2.75979 3.12561 3.13385 3.29973 3.68653 3.82022 3.93317 3.97993 4.12242 4.16990 4.19855 4.27680 4.30841 4.32262 4.38793 4.42059 4.55470 4.60185 4.64778 4.68477 4.72327 4.75018 4.78626 4.82234 4.86562 4.97313 5.05750 5.08331 5.14787 5.15801 5.20294 5.22766 5.26070 5.35094 5.37305 5.48869 5.54533 5.59382 5.66326 5.73476 5.75445 5.85733 6.12943 6.14824 6.18616 6.29011 6.33862 6.54453 6.85490 7.37744 8.91714 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.028816 B = 0.001881 C = 0.001861 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 971.434718 B =14880.055415 C =15045.392417 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.003 4.003 3 Si 0.967 3.033 4 H -0.272 1.272 5 H -0.281 1.281 6 H -0.263 1.263 7 C -0.543 4.543 8 H 0.059 0.941 9 C 0.025 3.975 10 C -0.092 4.092 11 C 0.075 3.925 12 N -0.688 5.688 13 C 0.096 3.904 14 H 0.058 0.942 15 C -0.133 4.133 16 C -0.115 4.115 17 C 0.075 3.925 18 N -0.546 5.546 19 C 0.100 3.900 20 C -0.091 4.091 21 C -0.112 4.112 22 C -0.131 4.131 23 C -0.130 4.130 24 C -0.130 4.130 25 C -0.123 4.123 26 C 0.070 3.930 27 C -0.095 4.095 28 H 0.264 0.736 29 H -0.010 1.010 30 H -0.009 1.009 31 H 0.052 0.948 32 H 0.049 0.951 33 H 0.020 0.980 34 H 0.057 0.943 35 H 0.342 0.658 36 H 0.071 0.929 37 H 0.044 0.956 38 H 0.057 0.943 39 H 0.068 0.932 40 H 0.038 0.962 41 H 0.063 0.937 42 H 0.048 0.952 43 H 0.089 0.911 44 H 0.127 0.873 45 H 0.135 0.865 46 H 0.136 0.864 47 H 0.135 0.865 48 H 0.124 0.876 49 H 0.042 0.958 50 H 0.084 0.916 51 H 0.063 0.937 52 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.628 -32.618 4.935 33.188 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.201 4.201 3 Si 0.791 3.209 4 H -0.197 1.197 5 H -0.206 1.206 6 H -0.187 1.187 7 C -0.581 4.581 8 H 0.078 0.922 9 C -0.012 4.012 10 C -0.130 4.130 11 C -0.054 4.054 12 N -0.318 5.318 13 C -0.013 4.013 14 H 0.076 0.924 15 C -0.172 4.172 16 C -0.153 4.153 17 C -0.052 4.052 18 N -0.272 5.272 19 C -0.026 4.026 20 C -0.092 4.092 21 C -0.131 4.131 22 C -0.148 4.148 23 C -0.148 4.148 24 C -0.148 4.148 25 C -0.141 4.141 26 C -0.059 4.059 27 C -0.133 4.133 28 H 0.072 0.928 29 H 0.008 0.992 30 H 0.009 0.991 31 H 0.071 0.929 32 H 0.068 0.932 33 H 0.038 0.962 34 H 0.076 0.924 35 H 0.160 0.840 36 H 0.090 0.910 37 H 0.063 0.937 38 H 0.076 0.924 39 H 0.087 0.913 40 H 0.056 0.944 41 H 0.082 0.918 42 H 0.066 0.934 43 H 0.108 0.892 44 H 0.145 0.855 45 H 0.153 0.847 46 H 0.154 0.846 47 H 0.153 0.847 48 H 0.142 0.858 49 H 0.060 0.940 50 H 0.102 0.898 51 H 0.082 0.918 52 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 3.933 -32.263 4.450 32.805 hybrid contribution -1.027 0.808 0.594 1.435 sum 2.906 -31.455 5.044 31.989 Atomic orbital electron populations 1.70101 1.07804 1.27763 1.51740 1.26023 0.95836 1.03478 0.94738 0.85418 0.78635 0.78272 0.78541 1.19707 1.20640 1.18741 1.21705 0.93550 0.92406 1.50445 0.92235 1.18971 0.94424 0.93185 0.94650 1.21379 0.97995 0.93034 1.00626 1.21807 0.94035 0.90339 0.99233 1.60744 1.19592 1.01432 1.49990 1.20609 0.96579 0.89044 0.95101 0.92380 1.21911 0.99750 0.97864 0.97658 1.21302 0.97816 0.94034 1.02180 1.22306 0.90179 0.95233 0.97452 1.60843 1.37705 1.12277 1.16327 1.21146 1.02088 0.86335 0.93077 1.19880 0.94049 0.98597 0.96624 1.21222 0.98955 0.98717 0.94194 1.21430 0.98417 0.98219 0.96783 1.21444 0.93166 0.99845 1.00331 1.21381 0.99609 0.99542 0.94243 1.21241 0.97032 0.98507 0.97358 1.21722 0.99514 0.94850 0.89798 1.20335 0.98986 0.93001 1.01001 0.92772 0.99194 0.99105 0.92927 0.93241 0.96159 0.92418 0.83988 0.91022 0.93700 0.92426 0.91300 0.94410 0.91840 0.93386 0.89242 0.85511 0.84741 0.84578 0.84683 0.85792 0.93961 0.89774 0.91805 0.91621 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.05 13.29 21.45 0.28 -57.76 16 2 C 0.00 -0.19 5.46 84.66 0.46 0.27 16 3 Si 0.97 45.21 29.54 68.60 2.03 47.23 16 4 H -0.27 -12.25 7.11 99.48 0.71 -11.55 16 5 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 6 H -0.26 -11.76 7.11 99.48 0.71 -11.05 16 7 C -0.54 -31.94 9.11 25.60 0.23 -31.70 16 8 H 0.06 3.36 7.74 -2.91 -0.02 3.34 16 9 C 0.03 1.39 4.97 29.85 0.15 1.54 16 10 C -0.09 -3.98 5.41 30.60 0.17 -3.82 16 11 C 0.08 2.70 5.45 86.31 0.47 3.17 16 12 N -0.69 -20.27 6.17 -500.28 -3.08 -23.36 16 13 C 0.10 2.34 2.02 43.25 0.09 2.43 16 14 H 0.06 1.53 7.23 -2.39 -0.02 1.51 16 15 C -0.13 -3.03 4.94 30.31 0.15 -2.88 16 16 C -0.11 -2.23 5.27 30.11 0.16 -2.07 16 17 C 0.08 1.30 4.11 86.41 0.35 1.65 16 18 N -0.55 -9.06 4.16 -900.83 -3.75 -12.81 16 19 C 0.10 1.39 5.10 85.56 0.44 1.83 16 20 C -0.09 -1.36 4.05 -19.87 -0.08 -1.44 16 21 C -0.11 -1.69 9.70 22.27 0.22 -1.48 16 22 C -0.13 -1.78 10.05 22.27 0.22 -1.56 16 23 C -0.13 -1.67 10.05 22.27 0.22 -1.44 16 24 C -0.13 -1.69 10.05 22.27 0.22 -1.47 16 25 C -0.12 -1.73 8.03 22.27 0.18 -1.55 16 26 C 0.07 1.17 5.37 87.12 0.47 1.63 16 27 C -0.09 -1.96 4.89 28.74 0.14 -1.82 16 28 H 0.26 15.32 8.31 -92.71 -0.77 14.55 16 29 H -0.01 -0.61 8.14 -2.39 -0.02 -0.63 16 30 H -0.01 -0.56 8.14 -2.39 -0.02 -0.58 16 31 H 0.05 2.29 8.14 -2.39 -0.02 2.27 16 32 H 0.05 2.06 8.14 -2.39 -0.02 2.05 16 33 H 0.02 0.74 7.15 -2.39 -0.02 0.72 16 34 H 0.06 2.15 8.05 -2.39 -0.02 2.13 16 35 H 0.34 9.64 8.50 -89.69 -0.76 8.88 16 36 H 0.07 1.67 7.79 -2.39 -0.02 1.65 16 37 H 0.04 1.17 7.07 -2.38 -0.02 1.15 16 38 H 0.06 1.13 6.66 -2.39 -0.02 1.12 16 39 H 0.07 1.29 8.14 -2.38 -0.02 1.27 16 40 H 0.04 0.60 6.81 -2.39 -0.02 0.58 16 41 H 0.06 1.22 7.02 -2.39 -0.02 1.20 16 42 H 0.05 0.60 8.01 -2.39 -0.02 0.58 16 43 H 0.09 1.14 8.08 -2.39 -0.02 1.12 16 44 H 0.13 1.73 8.06 -2.91 -0.02 1.70 16 45 H 0.13 1.36 8.06 -2.91 -0.02 1.34 16 46 H 0.14 1.20 8.06 -2.91 -0.02 1.17 16 47 H 0.14 1.25 8.06 -2.91 -0.02 1.23 16 48 H 0.12 1.49 7.44 -2.91 -0.02 1.47 16 49 H 0.04 0.73 6.79 -2.39 -0.02 0.71 16 50 H 0.08 1.16 7.61 -2.39 -0.02 1.14 16 51 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 52 H 0.07 1.44 8.08 -2.39 -0.02 1.42 16 Total: -1.00 -65.43 397.92 -0.16 -65.58 By element: Atomic # 1 Polarization: 19.71 SS G_CDS: 0.10 Total: 19.81 kcal Atomic # 6 Polarization: -42.97 SS G_CDS: 4.26 Total: -38.71 kcal Atomic # 7 Polarization: -87.38 SS G_CDS: -6.55 Total: -93.92 kcal Atomic # 14 Polarization: 45.21 SS G_CDS: 2.03 Total: 47.23 kcal Total: -65.43 -0.16 -65.58 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255385093.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.621 kcal (2) G-P(sol) polarization free energy of solvation -65.426 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.805 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.158 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.584 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.963 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds