Wall clock time and date at job start Tue Mar 31 2020 12:09:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86805 * 120.00275 * 2 1 4 4 H 1.48504 * 109.46825 * 270.00223 * 3 2 1 5 5 H 1.48496 * 109.46718 * 30.00039 * 3 2 1 6 6 H 1.48496 * 109.47155 * 150.00238 * 3 2 1 7 7 C 1.37882 * 120.00163 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00155 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99561 * 359.97438 * 7 2 1 10 10 C 1.53004 * 109.46872 * 180.02562 * 9 7 2 11 11 C 1.53000 * 109.47024 * 179.97438 * 10 9 7 12 12 N 1.46900 * 109.46990 * 180.02562 * 11 10 9 13 13 C 1.46903 * 110.99608 * 180.02562 * 12 11 10 14 14 H 1.08995 * 108.84736 * 323.66199 * 13 12 11 15 15 C 1.45877 * 108.93976 * 82.33560 * 13 12 11 16 16 C 1.54306 * 112.18956 * 181.81055 * 15 13 12 17 17 C 1.50446 * 108.49701 * 281.44886 * 16 15 13 18 18 N 1.48000 * 112.82153 * 93.73126 * 17 16 15 19 19 C 1.46895 * 110.99989 * 191.34843 * 18 17 16 20 20 C 1.50694 * 109.47420 * 293.95659 * 19 18 17 21 21 C 1.38237 * 120.00019 * 269.73027 * 20 19 18 22 22 C 1.38237 * 120.00230 * 179.76587 * 21 20 19 23 23 C 1.38243 * 119.99555 * 0.48427 * 22 21 20 24 24 C 1.38233 * 119.99822 * 359.78548 * 23 22 21 25 25 C 1.38227 * 120.00480 * 359.96395 * 24 23 22 26 26 C 1.48000 * 114.63160 * 318.09925 * 18 17 16 27 27 C 1.50453 * 112.83234 * 318.08514 * 26 18 17 28 28 H 0.97002 * 119.99501 * 359.97438 * 1 2 3 29 29 H 1.08999 * 109.46873 * 60.00102 * 9 7 2 30 30 H 1.08993 * 109.47099 * 299.99703 * 9 7 2 31 31 H 1.08997 * 109.46888 * 59.99711 * 10 9 7 32 32 H 1.08999 * 109.46933 * 300.00172 * 10 9 7 33 33 H 1.09003 * 109.47102 * 59.99875 * 11 10 9 34 34 H 1.08999 * 109.47364 * 300.00489 * 11 10 9 35 35 H 1.00896 * 111.00155 * 56.04967 * 12 11 10 36 36 H 1.08995 * 108.93574 * 302.50855 * 15 13 12 37 37 H 1.09002 * 108.93979 * 61.11373 * 15 13 12 38 38 H 1.08998 * 109.63527 * 41.15468 * 16 15 13 39 39 H 1.09007 * 109.63508 * 161.54770 * 16 15 13 40 40 H 1.08998 * 108.81952 * 214.59995 * 17 16 15 41 41 H 1.09006 * 108.81011 * 332.98980 * 17 16 15 42 42 H 1.09006 * 109.47301 * 53.95881 * 19 18 17 43 43 H 1.09006 * 109.47069 * 173.95453 * 19 18 17 44 44 H 1.08002 * 120.00350 * 359.97438 * 21 20 19 45 45 H 1.07998 * 120.00227 * 180.25354 * 22 21 20 46 46 H 1.08001 * 119.99394 * 179.77072 * 23 22 21 47 47 H 1.08006 * 119.99682 * 179.97438 * 24 23 22 48 48 H 1.08001 * 120.00202 * 179.97438 * 25 24 23 49 49 H 1.08998 * 108.81430 * 197.21954 * 26 18 17 50 50 H 1.08999 * 108.81144 * 78.94479 * 26 18 17 51 51 H 1.08993 * 109.63220 * 334.02265 * 27 26 18 52 52 H 1.08995 * 109.62716 * 213.43013 * 27 26 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6526 0.7000 6 1 3.5468 1.4401 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2452 -3.6621 -0.0005 11 6 1.4802 -4.9871 0.0001 12 7 2.4348 -6.1037 0.0007 13 6 1.7344 -7.3950 0.0007 14 1 0.8359 -7.3082 0.6116 15 6 1.3475 -7.7237 -1.3668 16 6 0.5637 -9.0505 -1.4477 17 6 1.5431 -10.1893 -1.3636 18 7 1.7240 -10.6901 0.0173 19 6 2.8702 -11.6053 0.0994 20 6 2.5774 -12.8500 -0.6979 21 6 1.9709 -13.9334 -0.0901 22 6 1.6979 -15.0735 -0.8227 23 6 2.0405 -15.1338 -2.1606 24 6 2.6520 -14.0525 -2.7669 25 6 2.9203 -12.9106 -2.0357 26 6 1.8137 -9.6336 1.0498 27 6 2.6583 -8.4657 0.6182 28 1 -0.4849 0.8401 0.0004 29 1 0.6240 -2.5566 -0.8903 30 1 0.6248 -2.5571 0.8896 31 1 2.8719 -3.6043 0.8894 32 1 2.8719 -3.6043 -0.8905 33 1 0.8532 -5.0451 -0.8897 34 1 0.8538 -5.0446 0.8903 35 1 3.0696 -6.0363 0.7821 36 1 0.7250 -6.9206 -1.7611 37 1 2.2458 -7.8057 -1.9787 38 1 -0.1405 -9.1110 -0.6180 39 1 0.0217 -9.0987 -2.3922 40 1 1.1864 -11.0068 -1.9901 41 1 2.5079 -9.8519 -1.7426 42 1 3.7562 -11.1151 -0.3043 43 1 3.0466 -11.8740 1.1410 44 1 1.7073 -13.8880 0.9562 45 1 1.2204 -15.9184 -0.3489 46 1 1.8306 -16.0260 -2.7320 47 1 2.9200 -14.0998 -3.8121 48 1 3.3984 -12.0659 -2.5093 49 1 2.2433 -10.0624 1.9551 50 1 0.8089 -9.2763 1.2752 51 1 3.3855 -8.7942 -0.1243 52 1 3.1757 -8.0489 1.4823 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255385094.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:09:40 Heat of formation + Delta-G solvation = 12.467103 kcal Electronic energy + Delta-G solvation = -25855.860684 eV Core-core repulsion = 22433.033335 eV Total energy + Delta-G solvation = -3422.827349 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.19043 -39.13187 -36.59803 -34.36170 -33.08004 -32.30476 -31.56128 -31.16955 -29.80750 -27.30289 -26.15187 -24.90683 -24.06695 -22.82888 -22.19594 -21.59561 -20.40237 -20.05981 -19.62844 -17.10194 -16.47791 -16.31640 -16.13900 -15.61739 -15.54397 -15.05900 -14.63708 -14.47856 -14.26860 -13.85510 -13.70890 -13.51514 -13.41243 -13.23611 -12.95326 -12.80243 -12.39271 -12.21199 -12.15089 -11.86228 -11.58182 -11.43775 -11.35049 -11.24293 -10.97960 -10.90339 -10.80866 -10.70729 -10.57508 -10.43496 -10.29142 -9.66849 -9.30775 -9.19083 -9.07352 -9.02694 -8.41733 -8.32862 -8.14180 -5.97976 -4.00016 1.04336 1.12769 3.33293 3.35890 3.39185 3.42850 3.82491 4.23835 4.42727 4.48705 4.53101 4.56213 4.71544 4.76525 4.84473 4.86908 5.00069 5.09581 5.15396 5.21015 5.26946 5.31979 5.37686 5.37745 5.43266 5.51447 5.58408 5.64950 5.71449 5.76139 5.77735 5.86094 5.87915 5.91622 6.09317 6.11872 6.16815 6.18546 6.22768 6.31557 6.34304 6.42066 6.70524 6.73742 6.80378 6.84163 6.92272 7.15697 7.38390 7.66268 7.70576 7.85683 8.02515 8.45908 9.07168 9.63827 11.13432 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.041769 B = 0.001772 C = 0.001759 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 670.191607 B =15793.143954 C =15912.914246 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.055 3.945 3 Si 0.892 3.108 4 H -0.280 1.280 5 H -0.287 1.287 6 H -0.274 1.274 7 C -0.519 4.519 8 H 0.055 0.945 9 C 0.022 3.978 10 C -0.106 4.106 11 C 0.059 3.941 12 N -0.692 5.692 13 C 0.093 3.907 14 H 0.038 0.962 15 C -0.113 4.113 16 C -0.121 4.121 17 C 0.065 3.935 18 N -0.543 5.543 19 C 0.095 3.905 20 C -0.074 4.074 21 C -0.100 4.100 22 C -0.122 4.122 23 C -0.123 4.123 24 C -0.122 4.122 25 C -0.113 4.113 26 C 0.061 3.939 27 C -0.148 4.148 28 H 0.260 0.740 29 H 0.016 0.984 30 H 0.013 0.987 31 H 0.044 0.956 32 H 0.055 0.945 33 H 0.066 0.934 34 H 0.023 0.977 35 H 0.337 0.663 36 H 0.065 0.935 37 H 0.066 0.934 38 H 0.072 0.928 39 H 0.071 0.929 40 H 0.070 0.930 41 H 0.035 0.965 42 H 0.042 0.958 43 H 0.081 0.919 44 H 0.121 0.879 45 H 0.120 0.880 46 H 0.119 0.881 47 H 0.120 0.880 48 H 0.118 0.882 49 H 0.069 0.931 50 H 0.076 0.924 51 H 0.069 0.931 52 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.140 -31.744 -1.291 32.039 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.145 4.145 3 Si 0.720 3.280 4 H -0.207 1.207 5 H -0.213 1.213 6 H -0.199 1.199 7 C -0.557 4.557 8 H 0.073 0.927 9 C -0.016 4.016 10 C -0.144 4.144 11 C -0.069 4.069 12 N -0.323 5.323 13 C -0.017 4.017 14 H 0.056 0.944 15 C -0.151 4.151 16 C -0.159 4.159 17 C -0.062 4.062 18 N -0.268 5.268 19 C -0.032 4.032 20 C -0.074 4.074 21 C -0.119 4.119 22 C -0.141 4.141 23 C -0.142 4.142 24 C -0.140 4.140 25 C -0.132 4.132 26 C -0.066 4.066 27 C -0.187 4.187 28 H 0.069 0.931 29 H 0.034 0.966 30 H 0.032 0.968 31 H 0.063 0.937 32 H 0.074 0.926 33 H 0.084 0.916 34 H 0.041 0.959 35 H 0.155 0.845 36 H 0.083 0.917 37 H 0.085 0.915 38 H 0.091 0.909 39 H 0.090 0.910 40 H 0.089 0.911 41 H 0.053 0.947 42 H 0.061 0.939 43 H 0.100 0.900 44 H 0.139 0.861 45 H 0.138 0.862 46 H 0.137 0.863 47 H 0.138 0.862 48 H 0.136 0.864 49 H 0.087 0.913 50 H 0.095 0.905 51 H 0.088 0.912 52 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 3.669 -31.832 -1.860 32.097 hybrid contribution 0.762 1.441 0.656 1.757 sum 4.431 -30.391 -1.205 30.736 Atomic orbital electron populations 1.69969 1.06053 1.26528 1.51024 1.25036 0.94855 0.99259 0.95399 0.86592 0.79827 0.83474 0.78100 1.20660 1.21252 1.19906 1.21263 0.93049 0.91077 1.50336 0.92692 1.19067 0.94027 0.91407 0.97086 1.21617 0.99153 0.93055 1.00622 1.22167 0.94132 0.90851 0.99770 1.60687 1.20434 1.01265 1.49903 1.20478 0.95239 0.89391 0.96575 0.94418 1.20602 1.00386 0.96876 0.97192 1.21406 0.98093 0.93720 1.02678 1.21829 0.98430 0.97256 0.88681 1.61891 1.40721 1.18896 1.05267 1.21048 0.91894 0.90660 0.99598 1.19778 0.98413 0.95166 0.94086 1.21019 0.97956 0.92846 1.00049 1.21154 1.00275 0.98141 0.94480 1.21147 0.99248 0.98619 0.95161 1.21123 0.99402 0.93604 0.99830 1.21089 1.00256 0.98010 0.93819 1.21882 1.00575 0.90439 0.93753 1.22109 0.98816 0.96699 1.01096 0.93055 0.96611 0.96832 0.93733 0.92648 0.91567 0.95851 0.84537 0.91652 0.91547 0.90887 0.90987 0.91118 0.94673 0.93949 0.90041 0.86078 0.86215 0.86324 0.86215 0.86385 0.91271 0.90541 0.91242 0.91178 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.33 13.29 55.43 0.74 -26.59 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 3 Si 0.89 21.97 29.54 -169.99 -5.02 16.94 16 4 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 5 H -0.29 -6.97 7.11 56.52 0.40 -6.56 16 6 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 7 C -0.52 -15.01 9.11 -34.44 -0.31 -15.33 16 8 H 0.05 1.55 7.74 -52.49 -0.41 1.14 16 9 C 0.02 0.57 4.97 -27.88 -0.14 0.43 16 10 C -0.11 -2.25 5.41 -26.73 -0.14 -2.39 16 11 C 0.06 1.04 5.45 -3.82 -0.02 1.02 16 12 N -0.69 -10.08 6.26 -109.59 -0.69 -10.76 16 13 C 0.09 1.12 2.06 -70.39 -0.14 0.97 16 14 H 0.04 0.49 7.16 -51.93 -0.37 0.12 16 15 C -0.11 -1.33 4.74 -29.42 -0.14 -1.47 16 16 C -0.12 -1.20 5.63 -27.32 -0.15 -1.35 16 17 C 0.06 0.61 4.22 -4.49 -0.02 0.59 16 18 N -0.54 -4.90 4.67 -237.34 -1.11 -6.01 16 19 C 0.10 0.77 5.04 -4.98 -0.03 0.74 16 20 C -0.07 -0.62 4.89 -104.63 -0.51 -1.13 16 21 C -0.10 -0.80 9.70 -39.58 -0.38 -1.19 16 22 C -0.12 -0.90 10.05 -39.58 -0.40 -1.30 16 23 C -0.12 -0.89 10.05 -39.58 -0.40 -1.29 16 24 C -0.12 -0.91 10.05 -39.59 -0.40 -1.31 16 25 C -0.11 -0.92 8.24 -39.59 -0.33 -1.25 16 26 C 0.06 0.54 5.16 -4.49 -0.02 0.52 16 27 C -0.15 -1.45 5.08 -27.31 -0.14 -1.59 16 28 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 29 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 30 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.04 0.92 8.14 -51.93 -0.42 0.49 16 32 H 0.05 1.19 8.14 -51.93 -0.42 0.77 16 33 H 0.07 1.20 7.06 -51.93 -0.37 0.83 16 34 H 0.02 0.41 8.04 -51.93 -0.42 0.00 16 35 H 0.34 4.61 8.05 -39.29 -0.32 4.30 16 36 H 0.06 0.87 6.99 -51.93 -0.36 0.51 16 37 H 0.07 0.82 7.52 -51.93 -0.39 0.43 16 38 H 0.07 0.76 7.08 -51.93 -0.37 0.40 16 39 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 40 H 0.07 0.68 6.86 -51.93 -0.36 0.32 16 41 H 0.04 0.34 6.36 -51.93 -0.33 0.01 16 42 H 0.04 0.35 7.76 -51.93 -0.40 -0.06 16 43 H 0.08 0.59 7.61 -51.93 -0.40 0.19 16 44 H 0.12 0.84 8.06 -52.49 -0.42 0.41 16 45 H 0.12 0.66 8.06 -52.49 -0.42 0.23 16 46 H 0.12 0.63 8.06 -52.49 -0.42 0.20 16 47 H 0.12 0.69 8.06 -52.48 -0.42 0.27 16 48 H 0.12 0.88 8.03 -52.49 -0.42 0.45 16 49 H 0.07 0.54 7.56 -51.93 -0.39 0.14 16 50 H 0.08 0.74 6.59 -51.93 -0.34 0.39 16 51 H 0.07 0.72 6.83 -51.93 -0.35 0.36 16 52 H 0.07 0.66 7.68 -51.93 -0.40 0.26 16 LS Contribution 396.54 15.07 5.98 5.98 Total: -1.00 -30.69 396.54 -13.21 -43.90 By element: Atomic # 1 Polarization: 9.68 SS G_CDS: -9.33 Total: 0.35 kcal Atomic # 6 Polarization: -20.03 SS G_CDS: -3.77 Total: -23.80 kcal Atomic # 7 Polarization: -42.31 SS G_CDS: -1.06 Total: -43.36 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.02 Total: 16.94 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -30.69 -13.21 -43.90 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255385094.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.365 kcal (2) G-P(sol) polarization free energy of solvation -30.687 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.678 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -13.211 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.898 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.467 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds