Wall clock time and date at job start Tue Mar 31 2020 12:09:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86805 * 120.00275 * 2 1 4 4 H 1.48504 * 109.46825 * 270.00223 * 3 2 1 5 5 H 1.48496 * 109.46718 * 30.00039 * 3 2 1 6 6 H 1.48496 * 109.47155 * 150.00238 * 3 2 1 7 7 C 1.37882 * 120.00163 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00155 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99561 * 359.97438 * 7 2 1 10 10 C 1.53004 * 109.46872 * 180.02562 * 9 7 2 11 11 C 1.53000 * 109.47024 * 179.97438 * 10 9 7 12 12 N 1.46900 * 109.46990 * 180.02562 * 11 10 9 13 13 C 1.46903 * 110.99608 * 180.02562 * 12 11 10 14 14 H 1.08995 * 108.84736 * 323.66199 * 13 12 11 15 15 C 1.45877 * 108.93976 * 82.33560 * 13 12 11 16 16 C 1.54306 * 112.18956 * 181.81055 * 15 13 12 17 17 C 1.50446 * 108.49701 * 281.44886 * 16 15 13 18 18 N 1.48000 * 112.82153 * 93.73126 * 17 16 15 19 19 C 1.46895 * 110.99989 * 191.34843 * 18 17 16 20 20 C 1.50694 * 109.47420 * 293.95659 * 19 18 17 21 21 C 1.38237 * 120.00019 * 269.73027 * 20 19 18 22 22 C 1.38237 * 120.00230 * 179.76587 * 21 20 19 23 23 C 1.38243 * 119.99555 * 0.48427 * 22 21 20 24 24 C 1.38233 * 119.99822 * 359.78548 * 23 22 21 25 25 C 1.38227 * 120.00480 * 359.96395 * 24 23 22 26 26 C 1.48000 * 114.63160 * 318.09925 * 18 17 16 27 27 C 1.50453 * 112.83234 * 318.08514 * 26 18 17 28 28 H 0.97002 * 119.99501 * 359.97438 * 1 2 3 29 29 H 1.08999 * 109.46873 * 60.00102 * 9 7 2 30 30 H 1.08993 * 109.47099 * 299.99703 * 9 7 2 31 31 H 1.08997 * 109.46888 * 59.99711 * 10 9 7 32 32 H 1.08999 * 109.46933 * 300.00172 * 10 9 7 33 33 H 1.09003 * 109.47102 * 59.99875 * 11 10 9 34 34 H 1.08999 * 109.47364 * 300.00489 * 11 10 9 35 35 H 1.00896 * 111.00155 * 56.04967 * 12 11 10 36 36 H 1.08995 * 108.93574 * 302.50855 * 15 13 12 37 37 H 1.09002 * 108.93979 * 61.11373 * 15 13 12 38 38 H 1.08998 * 109.63527 * 41.15468 * 16 15 13 39 39 H 1.09007 * 109.63508 * 161.54770 * 16 15 13 40 40 H 1.08998 * 108.81952 * 214.59995 * 17 16 15 41 41 H 1.09006 * 108.81011 * 332.98980 * 17 16 15 42 42 H 1.09006 * 109.47301 * 53.95881 * 19 18 17 43 43 H 1.09006 * 109.47069 * 173.95453 * 19 18 17 44 44 H 1.08002 * 120.00350 * 359.97438 * 21 20 19 45 45 H 1.07998 * 120.00227 * 180.25354 * 22 21 20 46 46 H 1.08001 * 119.99394 * 179.77072 * 23 22 21 47 47 H 1.08006 * 119.99682 * 179.97438 * 24 23 22 48 48 H 1.08001 * 120.00202 * 179.97438 * 25 24 23 49 49 H 1.08998 * 108.81430 * 197.21954 * 26 18 17 50 50 H 1.08999 * 108.81144 * 78.94479 * 26 18 17 51 51 H 1.08993 * 109.63220 * 334.02265 * 27 26 18 52 52 H 1.08995 * 109.62716 * 213.43013 * 27 26 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6526 0.7000 6 1 3.5468 1.4401 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2452 -3.6621 -0.0005 11 6 1.4802 -4.9871 0.0001 12 7 2.4348 -6.1037 0.0007 13 6 1.7344 -7.3950 0.0007 14 1 0.8359 -7.3082 0.6116 15 6 1.3475 -7.7237 -1.3668 16 6 0.5637 -9.0505 -1.4477 17 6 1.5431 -10.1893 -1.3636 18 7 1.7240 -10.6901 0.0173 19 6 2.8702 -11.6053 0.0994 20 6 2.5774 -12.8500 -0.6979 21 6 1.9709 -13.9334 -0.0901 22 6 1.6979 -15.0735 -0.8227 23 6 2.0405 -15.1338 -2.1606 24 6 2.6520 -14.0525 -2.7669 25 6 2.9203 -12.9106 -2.0357 26 6 1.8137 -9.6336 1.0498 27 6 2.6583 -8.4657 0.6182 28 1 -0.4849 0.8401 0.0004 29 1 0.6240 -2.5566 -0.8903 30 1 0.6248 -2.5571 0.8896 31 1 2.8719 -3.6043 0.8894 32 1 2.8719 -3.6043 -0.8905 33 1 0.8532 -5.0451 -0.8897 34 1 0.8538 -5.0446 0.8903 35 1 3.0696 -6.0363 0.7821 36 1 0.7250 -6.9206 -1.7611 37 1 2.2458 -7.8057 -1.9787 38 1 -0.1405 -9.1110 -0.6180 39 1 0.0217 -9.0987 -2.3922 40 1 1.1864 -11.0068 -1.9901 41 1 2.5079 -9.8519 -1.7426 42 1 3.7562 -11.1151 -0.3043 43 1 3.0466 -11.8740 1.1410 44 1 1.7073 -13.8880 0.9562 45 1 1.2204 -15.9184 -0.3489 46 1 1.8306 -16.0260 -2.7320 47 1 2.9200 -14.0998 -3.8121 48 1 3.3984 -12.0659 -2.5093 49 1 2.2433 -10.0624 1.9551 50 1 0.8089 -9.2763 1.2752 51 1 3.3855 -8.7942 -0.1243 52 1 3.1757 -8.0489 1.4823 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255385094.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:09:39 Heat of formation + Delta-G solvation = -4.649939 kcal Electronic energy + Delta-G solvation = -25856.602935 eV Core-core repulsion = 22433.033335 eV Total energy + Delta-G solvation = -3423.569600 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.94269 -39.83171 -37.69592 -35.92258 -34.54130 -33.35988 -32.67624 -31.72673 -31.07424 -28.33875 -27.62257 -25.81137 -25.13074 -23.88763 -23.30624 -22.27235 -21.90933 -21.14071 -20.49163 -18.49248 -17.68095 -17.28643 -17.01566 -16.67934 -16.51114 -16.25561 -15.84938 -15.56953 -15.38867 -14.99897 -14.58529 -14.40289 -14.24270 -14.12634 -14.00238 -13.80880 -13.56147 -13.44766 -13.36834 -13.11020 -12.82066 -12.71353 -12.49149 -12.33619 -12.16060 -12.09867 -11.93212 -11.80462 -11.71917 -11.57063 -11.48339 -11.41041 -11.26096 -10.98408 -10.56787 -9.75212 -9.64776 -9.39904 -9.09191 -8.21305 -6.32684 0.47854 0.56837 1.39147 1.40873 1.52056 2.40037 2.74345 3.10224 3.11616 3.21293 3.63730 3.77062 3.97917 4.00304 4.04113 4.20555 4.21814 4.26084 4.33295 4.35071 4.37043 4.38772 4.48096 4.54541 4.62832 4.66718 4.70519 4.73312 4.76467 4.81031 4.89967 4.93352 5.01479 5.06086 5.10601 5.17294 5.20492 5.21141 5.22310 5.28340 5.32531 5.40692 5.50731 5.62475 5.68461 5.72827 5.76372 5.83994 6.07759 6.13194 6.17499 6.22633 6.25959 6.51424 6.84062 7.36597 8.90576 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.041769 B = 0.001772 C = 0.001759 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 670.191607 B =15793.143954 C =15912.914246 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.002 4.002 3 Si 0.967 3.033 4 H -0.272 1.272 5 H -0.281 1.281 6 H -0.263 1.263 7 C -0.545 4.545 8 H 0.060 0.940 9 C 0.025 3.975 10 C -0.091 4.091 11 C 0.074 3.926 12 N -0.692 5.692 13 C 0.094 3.906 14 H 0.032 0.968 15 C -0.108 4.108 16 C -0.112 4.112 17 C 0.072 3.928 18 N -0.547 5.547 19 C 0.098 3.902 20 C -0.085 4.085 21 C -0.112 4.112 22 C -0.130 4.130 23 C -0.131 4.131 24 C -0.131 4.131 25 C -0.125 4.125 26 C 0.064 3.936 27 C -0.136 4.136 28 H 0.264 0.736 29 H -0.010 1.010 30 H -0.009 1.009 31 H 0.051 0.949 32 H 0.051 0.949 33 H 0.057 0.943 34 H 0.021 0.979 35 H 0.344 0.656 36 H 0.045 0.955 37 H 0.061 0.939 38 H 0.069 0.931 39 H 0.078 0.922 40 H 0.069 0.931 41 H 0.032 0.968 42 H 0.041 0.959 43 H 0.092 0.908 44 H 0.129 0.871 45 H 0.137 0.863 46 H 0.137 0.863 47 H 0.134 0.866 48 H 0.120 0.880 49 H 0.086 0.914 50 H 0.069 0.931 51 H 0.067 0.933 52 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.340 -32.805 -0.959 33.251 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.200 4.200 3 Si 0.791 3.209 4 H -0.198 1.198 5 H -0.206 1.206 6 H -0.187 1.187 7 C -0.582 4.582 8 H 0.078 0.922 9 C -0.013 4.013 10 C -0.129 4.129 11 C -0.055 4.055 12 N -0.323 5.323 13 C -0.016 4.016 14 H 0.050 0.950 15 C -0.146 4.146 16 C -0.151 4.151 17 C -0.055 4.055 18 N -0.272 5.272 19 C -0.029 4.029 20 C -0.086 4.086 21 C -0.130 4.130 22 C -0.148 4.148 23 C -0.149 4.149 24 C -0.149 4.149 25 C -0.144 4.144 26 C -0.064 4.064 27 C -0.176 4.176 28 H 0.072 0.928 29 H 0.008 0.992 30 H 0.009 0.991 31 H 0.070 0.930 32 H 0.069 0.931 33 H 0.075 0.925 34 H 0.039 0.961 35 H 0.163 0.837 36 H 0.064 0.936 37 H 0.079 0.921 38 H 0.088 0.912 39 H 0.097 0.903 40 H 0.088 0.912 41 H 0.050 0.950 42 H 0.059 0.941 43 H 0.110 0.890 44 H 0.147 0.853 45 H 0.155 0.845 46 H 0.155 0.845 47 H 0.152 0.848 48 H 0.138 0.862 49 H 0.104 0.896 50 H 0.088 0.912 51 H 0.085 0.915 52 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 4.882 -32.916 -1.526 33.311 hybrid contribution 0.355 1.712 0.530 1.827 sum 5.238 -31.204 -0.996 31.656 Atomic orbital electron populations 1.70102 1.07818 1.27782 1.51645 1.26016 0.95817 1.03460 0.94674 0.85418 0.78649 0.78279 0.78523 1.19765 1.20603 1.18713 1.21701 0.93548 0.92402 1.50598 0.92226 1.18975 0.94439 0.93207 0.94677 1.21367 0.97976 0.92936 1.00656 1.21837 0.93998 0.90388 0.99271 1.60620 1.19954 1.01368 1.50406 1.20557 0.95427 0.88772 0.96800 0.95006 1.20559 0.99983 0.97260 0.96841 1.21336 0.97939 0.92883 1.02922 1.21714 0.97936 0.96761 0.89084 1.61886 1.41394 1.18940 1.04950 1.21057 0.91323 0.90309 1.00208 1.19877 0.98939 0.95463 0.94315 1.21215 0.98106 0.93057 1.00642 1.21435 1.00100 0.98536 0.94711 1.21444 0.98819 0.99214 0.95409 1.21378 0.99315 0.93552 1.00636 1.21221 1.00653 0.98473 0.94016 1.21857 1.00088 0.90095 0.94319 1.22018 0.98299 0.96145 1.01096 0.92757 0.99191 0.99095 0.93030 0.93053 0.92458 0.96113 0.83687 0.93641 0.92057 0.91243 0.90319 0.91215 0.94973 0.94115 0.89016 0.85291 0.84520 0.84516 0.84844 0.86208 0.89571 0.91225 0.91478 0.90281 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.78 13.29 21.45 0.28 -57.49 16 2 C 0.00 -0.12 5.46 84.66 0.46 0.34 16 3 Si 0.97 44.95 29.54 68.60 2.03 46.97 16 4 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 5 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 6 H -0.26 -11.66 7.11 99.48 0.71 -10.95 16 7 C -0.54 -31.85 9.11 25.60 0.23 -31.61 16 8 H 0.06 3.35 7.74 -2.91 -0.02 3.32 16 9 C 0.02 1.34 4.97 29.85 0.15 1.49 16 10 C -0.09 -3.89 5.41 30.60 0.17 -3.73 16 11 C 0.07 2.63 5.45 86.30 0.47 3.10 16 12 N -0.69 -19.69 6.26 -500.64 -3.13 -22.82 16 13 C 0.09 2.19 2.06 43.18 0.09 2.28 16 14 H 0.03 0.81 7.16 -2.39 -0.02 0.79 16 15 C -0.11 -2.54 4.74 28.85 0.14 -2.40 16 16 C -0.11 -2.17 5.63 30.21 0.17 -2.00 16 17 C 0.07 1.28 4.22 85.27 0.36 1.64 16 18 N -0.55 -9.11 4.67 -904.82 -4.22 -13.33 16 19 C 0.10 1.44 5.04 85.56 0.43 1.87 16 20 C -0.09 -1.34 4.89 -19.87 -0.10 -1.44 16 21 C -0.11 -1.64 9.70 22.27 0.22 -1.43 16 22 C -0.13 -1.72 10.05 22.27 0.22 -1.49 16 23 C -0.13 -1.69 10.05 22.27 0.22 -1.47 16 24 C -0.13 -1.82 10.05 22.27 0.22 -1.59 16 25 C -0.13 -1.93 8.24 22.27 0.18 -1.75 16 26 C 0.06 1.03 5.16 85.27 0.44 1.47 16 27 C -0.14 -2.45 5.08 30.22 0.15 -2.30 16 28 H 0.26 15.28 8.31 -92.71 -0.77 14.51 16 29 H -0.01 -0.61 8.14 -2.39 -0.02 -0.63 16 30 H -0.01 -0.54 8.14 -2.39 -0.02 -0.56 16 31 H 0.05 2.11 8.14 -2.39 -0.02 2.09 16 32 H 0.05 2.21 8.14 -2.39 -0.02 2.19 16 33 H 0.06 2.13 7.06 -2.39 -0.02 2.11 16 34 H 0.02 0.74 8.04 -2.39 -0.02 0.72 16 35 H 0.34 8.96 8.05 -89.70 -0.72 8.24 16 36 H 0.04 1.24 6.99 -2.39 -0.02 1.22 16 37 H 0.06 1.50 7.52 -2.39 -0.02 1.48 16 38 H 0.07 1.41 7.08 -2.39 -0.02 1.39 16 39 H 0.08 1.41 8.14 -2.38 -0.02 1.39 16 40 H 0.07 1.27 6.86 -2.39 -0.02 1.26 16 41 H 0.03 0.59 6.36 -2.38 -0.02 0.58 16 42 H 0.04 0.61 7.76 -2.38 -0.02 0.59 16 43 H 0.09 1.14 7.61 -2.38 -0.02 1.12 16 44 H 0.13 1.59 8.06 -2.91 -0.02 1.57 16 45 H 0.14 1.24 8.06 -2.91 -0.02 1.22 16 46 H 0.14 1.18 8.06 -2.91 -0.02 1.15 16 47 H 0.13 1.37 8.06 -2.91 -0.02 1.35 16 48 H 0.12 1.71 8.03 -2.91 -0.02 1.68 16 49 H 0.09 1.12 7.56 -2.39 -0.02 1.10 16 50 H 0.07 1.24 6.59 -2.39 -0.02 1.22 16 51 H 0.07 1.27 6.83 -2.39 -0.02 1.26 16 52 H 0.08 1.31 7.68 -2.39 -0.02 1.29 16 Total: -1.00 -65.80 396.54 -0.66 -66.46 By element: Atomic # 1 Polarization: 19.08 SS G_CDS: 0.15 Total: 19.23 kcal Atomic # 6 Polarization: -43.25 SS G_CDS: 4.23 Total: -39.02 kcal Atomic # 7 Polarization: -86.57 SS G_CDS: -7.07 Total: -93.64 kcal Atomic # 14 Polarization: 44.95 SS G_CDS: 2.03 Total: 46.97 kcal Total: -65.80 -0.66 -66.46 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255385094.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.809 kcal (2) G-P(sol) polarization free energy of solvation -65.797 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.988 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.662 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.459 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.650 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds