Wall clock time and date at job start Tue Mar 31 2020 11:05:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86794 * 120.00188 * 2 1 4 4 H 1.48500 * 109.47048 * 239.99837 * 3 2 1 5 5 H 1.48497 * 109.47393 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47253 * 119.99805 * 3 2 1 7 7 C 1.37878 * 119.99800 * 179.97438 * 2 1 3 8 8 C 1.51261 * 120.85246 * 180.02562 * 7 2 1 9 9 C 1.53225 * 108.53951 * 231.32712 * 8 7 2 10 10 C 1.52956 * 109.40634 * 305.37079 * 9 8 7 11 11 H 1.09003 * 109.35654 * 303.53075 * 10 9 8 12 12 N 1.46897 * 109.42066 * 183.70351 * 10 9 8 13 13 C 1.46899 * 110.99898 * 84.64381 * 12 10 9 14 14 C 1.53123 * 109.57491 * 85.30254 * 13 12 10 15 15 C 1.53034 * 109.27992 * 177.60193 * 14 13 12 16 16 N 1.46847 * 109.51345 * 300.80438 * 15 14 13 17 17 C 1.38411 * 110.99923 * 185.84622 * 16 15 14 18 18 N 1.32495 * 119.21449 * 359.73094 * 17 16 15 19 19 C 1.32275 * 120.73722 * 179.71845 * 18 17 16 20 20 C 1.38610 * 119.19436 * 0.54065 * 19 18 17 21 21 C 1.38607 * 118.56253 * 359.73449 * 20 19 18 22 22 N 1.32277 * 119.19416 * 359.97438 * 21 20 19 23 23 C 1.46843 * 111.20124 * 61.74903 * 16 15 14 24 24 C 1.53042 * 109.52278 * 298.25596 * 23 16 15 25 25 C 1.52962 * 109.81549 * 63.59574 * 10 9 8 26 26 C 1.51268 * 120.84752 * 0.02562 * 7 2 1 27 27 H 0.97002 * 119.99677 * 0.02562 * 1 2 3 28 28 H 1.09004 * 109.62641 * 351.03836 * 8 7 2 29 29 H 1.09004 * 109.63040 * 111.61199 * 8 7 2 30 30 H 1.09001 * 109.48865 * 185.39269 * 9 8 7 31 31 H 1.08996 * 109.48594 * 65.35077 * 9 8 7 32 32 H 1.00892 * 111.00118 * 208.60363 * 12 10 9 33 33 H 1.09003 * 109.52480 * 325.13364 * 13 12 10 34 34 H 1.08997 * 109.51083 * 57.64787 * 14 13 12 35 35 H 1.08998 * 109.48980 * 297.53718 * 14 13 12 36 36 H 1.09002 * 109.46271 * 180.79158 * 15 14 13 37 37 H 1.08994 * 109.46242 * 60.81457 * 15 14 13 38 38 H 1.07994 * 120.40383 * 180.29448 * 19 18 17 39 39 H 1.08001 * 120.71739 * 179.75210 * 20 19 18 40 40 H 1.07990 * 120.40320 * 180.02562 * 21 20 19 41 41 H 1.08993 * 109.46313 * 58.27251 * 23 16 15 42 42 H 1.09000 * 109.46480 * 178.25361 * 23 16 15 43 43 H 1.08997 * 109.50758 * 179.11703 * 24 23 16 44 44 H 1.08999 * 109.50480 * 299.24136 * 24 23 16 45 45 H 1.08994 * 109.48006 * 56.38601 * 25 10 9 46 46 H 1.08999 * 109.47942 * 176.42759 * 25 10 9 47 47 H 1.09001 * 109.63152 * 8.95785 * 26 7 2 48 48 H 1.09002 * 109.78548 * 248.48029 * 26 7 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2843 2.7464 -0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0045 -1.1941 0.0005 8 6 3.5169 -1.2166 0.0011 9 6 3.9910 -2.1318 -1.1327 10 6 3.3401 -3.5077 -0.9810 11 1 3.5737 -3.9112 0.0042 12 7 3.8618 -4.4114 -2.0150 13 6 5.1275 -5.0236 -1.5893 14 6 4.8373 -6.2709 -0.7499 15 6 6.1591 -6.9366 -0.3604 16 7 6.9000 -7.3032 -1.5741 17 6 8.0393 -8.0241 -1.2610 18 7 8.3148 -8.2784 0.0098 19 6 9.3924 -8.9694 0.3428 20 6 10.2427 -9.4186 -0.6555 21 6 9.9274 -9.1302 -1.9740 22 7 8.8309 -8.4394 -2.2390 23 6 7.2313 -6.1164 -2.3729 24 6 5.9415 -5.4260 -2.8223 25 6 1.8232 -3.3833 -1.1328 26 6 1.2676 -2.5151 0.0005 27 1 -0.4850 0.8401 -0.0004 28 1 3.8982 -0.2081 -0.1589 29 1 3.8771 -1.6000 0.9559 30 1 5.0751 -2.2356 -1.0871 31 1 3.7071 -1.6992 -2.0920 32 1 3.1817 -5.1168 -2.2552 33 1 5.6962 -4.3085 -0.9948 34 1 4.2355 -6.9692 -1.3316 35 1 4.2946 -5.9848 0.1510 36 1 5.9555 -7.8330 0.2255 37 1 6.7543 -6.2425 0.2327 38 1 9.6093 -9.1776 1.3800 39 1 11.1315 -9.9815 -0.4111 40 1 10.5687 -9.4660 -2.7753 41 1 7.8216 -5.4262 -1.7702 42 1 7.8063 -6.4169 -3.2487 43 1 6.1877 -4.5364 -3.4019 44 1 5.3570 -6.1110 -3.4364 45 1 1.5905 -2.9210 -2.0921 46 1 1.3708 -4.3740 -1.0872 47 1 0.2036 -2.3409 -0.1598 48 1 1.4160 -3.0204 0.9549 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001256046824.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:05:19 Heat of formation + Delta-G solvation = 51.587959 kcal Electronic energy + Delta-G solvation = -26546.692132 eV Core-core repulsion = 23022.020847 eV Total energy + Delta-G solvation = -3524.671285 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.196 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.51502 -39.26107 -37.36941 -34.96266 -34.06266 -32.65923 -31.30900 -30.99349 -29.87252 -29.31480 -26.57318 -25.11066 -24.30951 -22.94439 -22.48806 -21.51969 -21.18792 -19.86438 -19.06897 -18.19983 -17.68186 -16.23743 -16.01101 -15.66514 -15.20046 -14.99280 -14.69519 -14.59273 -14.41333 -13.87526 -13.74629 -13.59232 -13.21720 -13.13980 -12.64818 -12.43109 -12.21167 -11.95956 -11.61450 -11.43447 -11.33470 -11.22087 -11.11344 -10.91085 -10.86618 -10.67158 -10.56728 -10.36163 -10.20706 -10.05837 -9.93629 -9.58972 -9.46199 -8.86875 -8.64386 -8.59176 -8.43061 -7.87837 -6.06320 -3.96342 0.64902 0.81107 2.90274 3.31815 3.38107 3.39767 3.47573 3.84974 4.28225 4.40266 4.42177 4.42756 4.74488 4.80014 4.84670 4.85881 5.08665 5.10970 5.21963 5.26202 5.40520 5.48102 5.60089 5.60127 5.76667 5.78236 5.84157 5.87248 5.96354 6.07615 6.17595 6.29012 6.31340 6.49993 6.53083 6.59076 6.71955 6.83154 6.91129 6.98985 7.00296 7.09921 7.11773 7.48769 7.62233 7.71241 7.78897 7.86834 7.87403 7.92983 8.43417 9.00913 9.58830 11.03627 Molecular weight = 316.20amu Principal moments of inertia in cm(-1) A = 0.029599 B = 0.002483 C = 0.002452 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 945.741821 B =11272.998786 C =11415.596358 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.075 3.925 3 Si 0.891 3.109 4 H -0.274 1.274 5 H -0.293 1.293 6 H -0.276 1.276 7 C -0.485 4.485 8 C -0.012 4.012 9 C -0.091 4.091 10 C 0.101 3.899 11 H 0.032 0.968 12 N -0.684 5.684 13 C 0.085 3.915 14 C -0.149 4.149 15 C 0.077 3.923 16 N -0.458 5.458 17 C 0.496 3.504 18 N -0.553 5.553 19 C 0.174 3.826 20 C -0.269 4.269 21 C 0.174 3.826 22 N -0.532 5.532 23 C 0.069 3.931 24 C -0.104 4.104 25 C -0.108 4.108 26 C 0.012 3.988 27 H 0.264 0.736 28 H 0.023 0.977 29 H 0.014 0.986 30 H 0.027 0.973 31 H 0.056 0.944 32 H 0.335 0.665 33 H 0.076 0.924 34 H 0.072 0.928 35 H 0.075 0.925 36 H 0.085 0.915 37 H 0.053 0.947 38 H 0.167 0.833 39 H 0.145 0.855 40 H 0.169 0.831 41 H 0.043 0.957 42 H 0.093 0.907 43 H 0.082 0.918 44 H 0.074 0.926 45 H 0.057 0.943 46 H 0.026 0.974 47 H 0.057 0.943 48 H 0.000 1.000 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.992 -18.043 -2.494 26.315 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.127 4.127 3 Si 0.719 3.281 4 H -0.199 1.199 5 H -0.219 1.219 6 H -0.201 1.201 7 C -0.504 4.504 8 C -0.050 4.050 9 C -0.129 4.129 10 C -0.007 4.007 11 H 0.050 0.950 12 N -0.313 5.313 13 C -0.026 4.026 14 C -0.189 4.189 15 C -0.051 4.051 16 N -0.177 5.177 17 C 0.141 3.859 18 N -0.272 5.272 19 C 0.006 3.994 20 C -0.292 4.292 21 C 0.006 3.994 22 N -0.250 5.250 23 C -0.057 4.057 24 C -0.142 4.142 25 C -0.146 4.146 26 C -0.026 4.026 27 H 0.074 0.926 28 H 0.042 0.958 29 H 0.032 0.968 30 H 0.046 0.954 31 H 0.075 0.925 32 H 0.153 0.847 33 H 0.094 0.906 34 H 0.091 0.909 35 H 0.094 0.906 36 H 0.104 0.896 37 H 0.071 0.929 38 H 0.184 0.816 39 H 0.163 0.837 40 H 0.186 0.814 41 H 0.062 0.938 42 H 0.112 0.888 43 H 0.100 0.900 44 H 0.092 0.908 45 H 0.076 0.924 46 H 0.045 0.955 47 H 0.076 0.924 48 H 0.019 0.981 Dipole moment (debyes) X Y Z Total from point charges 17.894 -17.097 -3.400 24.982 hybrid contribution 1.375 -0.011 1.331 1.914 sum 19.270 -17.108 -2.069 25.851 Atomic orbital electron populations 1.69826 1.06130 1.26957 1.50030 1.24839 0.94731 0.98527 0.94651 0.86658 0.79385 0.83077 0.78947 1.19945 1.21931 1.20148 1.20013 0.89302 0.91460 1.49670 1.19649 0.96762 0.94700 0.93923 1.21539 0.96050 0.94757 1.00604 1.21433 0.95598 0.92683 0.90987 0.95019 1.60692 1.05232 1.22178 1.43209 1.21654 0.92755 0.93620 0.94540 1.22449 0.96597 0.98327 1.01516 1.21984 0.93891 1.00663 0.88557 1.58395 1.15159 1.22746 1.21423 1.21165 0.88333 0.92148 0.84282 1.68441 1.20864 1.18176 1.19764 1.23087 0.87605 0.88183 1.00509 1.22716 1.04032 1.07101 0.95385 1.23103 0.91202 0.89054 0.96075 1.68047 1.05955 1.14631 1.36409 1.22253 0.98567 0.87644 0.97248 1.21616 0.94250 1.00233 0.98108 1.21796 0.92819 0.97884 1.02142 1.19341 0.98652 0.92926 0.91694 0.92603 0.95818 0.96779 0.95440 0.92501 0.84666 0.90621 0.90913 0.90602 0.89625 0.92897 0.81587 0.83683 0.81408 0.93827 0.88829 0.89982 0.90772 0.92425 0.95512 0.92441 0.98113 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.92 12.73 55.43 0.71 -25.22 16 2 C 0.07 2.07 5.46 -17.82 -0.10 1.98 16 3 Si 0.89 21.63 26.80 -169.99 -4.56 17.07 16 4 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 5 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 6 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 7 C -0.49 -12.90 5.51 -98.93 -0.55 -13.45 16 8 C -0.01 -0.29 5.59 -27.49 -0.15 -0.44 16 9 C -0.09 -1.89 5.43 -26.64 -0.14 -2.03 16 10 C 0.10 1.92 2.21 -67.76 -0.15 1.77 16 11 H 0.03 0.62 7.16 -51.93 -0.37 0.25 16 12 N -0.68 -10.72 6.06 -99.65 -0.60 -11.32 16 13 C 0.09 1.15 2.33 -67.58 -0.16 0.99 16 14 C -0.15 -1.85 5.34 -26.65 -0.14 -1.99 16 15 C 0.08 0.92 4.63 -3.84 -0.02 0.91 16 16 N -0.46 -5.67 4.72 -175.43 -0.83 -6.50 16 17 C 0.50 6.14 7.17 -322.80 -2.32 3.83 16 18 N -0.55 -6.34 8.68 -13.93 -0.12 -6.46 16 19 C 0.17 1.40 11.30 -17.22 -0.19 1.21 16 20 C -0.27 -1.73 10.16 -39.31 -0.40 -2.13 16 21 C 0.17 1.36 11.30 -17.22 -0.19 1.17 16 22 N -0.53 -6.08 9.65 -13.93 -0.13 -6.21 16 23 C 0.07 0.79 5.33 -3.83 -0.02 0.77 16 24 C -0.10 -1.23 5.70 -26.64 -0.15 -1.39 16 25 C -0.11 -2.27 5.24 -26.65 -0.14 -2.41 16 26 C 0.01 0.29 5.97 -27.50 -0.16 0.13 16 27 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 28 H 0.02 0.55 5.17 -51.93 -0.27 0.28 16 29 H 0.01 0.32 8.14 -51.93 -0.42 -0.10 16 30 H 0.03 0.52 7.36 -51.93 -0.38 0.13 16 31 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 32 H 0.34 4.96 8.01 -39.30 -0.31 4.64 16 33 H 0.08 1.12 7.07 -51.93 -0.37 0.75 16 34 H 0.07 0.89 8.10 -51.93 -0.42 0.47 16 35 H 0.08 0.99 7.48 -51.93 -0.39 0.60 16 36 H 0.09 1.04 7.69 -51.93 -0.40 0.65 16 37 H 0.05 0.67 8.10 -51.93 -0.42 0.25 16 38 H 0.17 0.80 8.06 -52.49 -0.42 0.38 16 39 H 0.15 0.46 8.06 -52.49 -0.42 0.04 16 40 H 0.17 0.73 8.06 -52.49 -0.42 0.31 16 41 H 0.04 0.51 8.14 -51.93 -0.42 0.09 16 42 H 0.09 1.06 7.55 -51.93 -0.39 0.66 16 43 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 44 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 45 H 0.06 1.29 8.14 -51.93 -0.42 0.86 16 46 H 0.03 0.50 8.05 -51.93 -0.42 0.08 16 47 H 0.06 1.57 7.07 -51.93 -0.37 1.21 16 48 H 0.00 0.01 8.14 -51.93 -0.42 -0.41 16 LS Contribution 366.92 15.07 5.53 5.53 Total: -1.00 -30.37 366.92 -12.87 -43.24 By element: Atomic # 1 Polarization: 8.84 SS G_CDS: -7.87 Total: 0.97 kcal Atomic # 6 Polarization: -6.11 SS G_CDS: -4.99 Total: -11.10 kcal Atomic # 7 Polarization: -54.73 SS G_CDS: -0.98 Total: -55.71 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -4.56 Total: 17.07 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -30.37 -12.87 -43.24 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001256046824.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.828 kcal (2) G-P(sol) polarization free energy of solvation -30.371 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.457 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.869 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.240 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.588 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds