Wall clock time and date at job start Tue Mar 31 2020 11:05:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86794 * 120.00188 * 2 1 4 4 H 1.48500 * 109.47048 * 239.99837 * 3 2 1 5 5 H 1.48497 * 109.47393 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47253 * 119.99805 * 3 2 1 7 7 C 1.37878 * 119.99800 * 179.97438 * 2 1 3 8 8 C 1.51261 * 120.85246 * 180.02562 * 7 2 1 9 9 C 1.53225 * 108.53951 * 231.32712 * 8 7 2 10 10 C 1.52956 * 109.40634 * 305.37079 * 9 8 7 11 11 H 1.09003 * 109.35654 * 303.53075 * 10 9 8 12 12 N 1.46897 * 109.42066 * 183.70351 * 10 9 8 13 13 C 1.46899 * 110.99898 * 84.64381 * 12 10 9 14 14 C 1.53123 * 109.57491 * 85.30254 * 13 12 10 15 15 C 1.53034 * 109.27992 * 177.60193 * 14 13 12 16 16 N 1.46847 * 109.51345 * 300.80438 * 15 14 13 17 17 C 1.38411 * 110.99923 * 185.84622 * 16 15 14 18 18 N 1.32495 * 119.21449 * 359.73094 * 17 16 15 19 19 C 1.32275 * 120.73722 * 179.71845 * 18 17 16 20 20 C 1.38610 * 119.19436 * 0.54065 * 19 18 17 21 21 C 1.38607 * 118.56253 * 359.73449 * 20 19 18 22 22 N 1.32277 * 119.19416 * 359.97438 * 21 20 19 23 23 C 1.46843 * 111.20124 * 61.74903 * 16 15 14 24 24 C 1.53042 * 109.52278 * 298.25596 * 23 16 15 25 25 C 1.52962 * 109.81549 * 63.59574 * 10 9 8 26 26 C 1.51268 * 120.84752 * 0.02562 * 7 2 1 27 27 H 0.97002 * 119.99677 * 0.02562 * 1 2 3 28 28 H 1.09004 * 109.62641 * 351.03836 * 8 7 2 29 29 H 1.09004 * 109.63040 * 111.61199 * 8 7 2 30 30 H 1.09001 * 109.48865 * 185.39269 * 9 8 7 31 31 H 1.08996 * 109.48594 * 65.35077 * 9 8 7 32 32 H 1.00892 * 111.00118 * 208.60363 * 12 10 9 33 33 H 1.09003 * 109.52480 * 325.13364 * 13 12 10 34 34 H 1.08997 * 109.51083 * 57.64787 * 14 13 12 35 35 H 1.08998 * 109.48980 * 297.53718 * 14 13 12 36 36 H 1.09002 * 109.46271 * 180.79158 * 15 14 13 37 37 H 1.08994 * 109.46242 * 60.81457 * 15 14 13 38 38 H 1.07994 * 120.40383 * 180.29448 * 19 18 17 39 39 H 1.08001 * 120.71739 * 179.75210 * 20 19 18 40 40 H 1.07990 * 120.40320 * 180.02562 * 21 20 19 41 41 H 1.08993 * 109.46313 * 58.27251 * 23 16 15 42 42 H 1.09000 * 109.46480 * 178.25361 * 23 16 15 43 43 H 1.08997 * 109.50758 * 179.11703 * 24 23 16 44 44 H 1.08999 * 109.50480 * 299.24136 * 24 23 16 45 45 H 1.08994 * 109.48006 * 56.38601 * 25 10 9 46 46 H 1.08999 * 109.47942 * 176.42759 * 25 10 9 47 47 H 1.09001 * 109.63152 * 8.95785 * 26 7 2 48 48 H 1.09002 * 109.78548 * 248.48029 * 26 7 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2843 2.7464 -0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0045 -1.1941 0.0005 8 6 3.5169 -1.2166 0.0011 9 6 3.9910 -2.1318 -1.1327 10 6 3.3401 -3.5077 -0.9810 11 1 3.5737 -3.9112 0.0042 12 7 3.8618 -4.4114 -2.0150 13 6 5.1275 -5.0236 -1.5893 14 6 4.8373 -6.2709 -0.7499 15 6 6.1591 -6.9366 -0.3604 16 7 6.9000 -7.3032 -1.5741 17 6 8.0393 -8.0241 -1.2610 18 7 8.3148 -8.2784 0.0098 19 6 9.3924 -8.9694 0.3428 20 6 10.2427 -9.4186 -0.6555 21 6 9.9274 -9.1302 -1.9740 22 7 8.8309 -8.4394 -2.2390 23 6 7.2313 -6.1164 -2.3729 24 6 5.9415 -5.4260 -2.8223 25 6 1.8232 -3.3833 -1.1328 26 6 1.2676 -2.5151 0.0005 27 1 -0.4850 0.8401 -0.0004 28 1 3.8982 -0.2081 -0.1589 29 1 3.8771 -1.6000 0.9559 30 1 5.0751 -2.2356 -1.0871 31 1 3.7071 -1.6992 -2.0920 32 1 3.1817 -5.1168 -2.2552 33 1 5.6962 -4.3085 -0.9948 34 1 4.2355 -6.9692 -1.3316 35 1 4.2946 -5.9848 0.1510 36 1 5.9555 -7.8330 0.2255 37 1 6.7543 -6.2425 0.2327 38 1 9.6093 -9.1776 1.3800 39 1 11.1315 -9.9815 -0.4111 40 1 10.5687 -9.4660 -2.7753 41 1 7.8216 -5.4262 -1.7702 42 1 7.8063 -6.4169 -3.2487 43 1 6.1877 -4.5364 -3.4019 44 1 5.3570 -6.1110 -3.4364 45 1 1.5905 -2.9210 -2.0921 46 1 1.3708 -4.3740 -1.0872 47 1 0.2036 -2.3409 -0.1598 48 1 1.4160 -3.0204 0.9549 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001256046824.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:05:18 Heat of formation + Delta-G solvation = 33.658925 kcal Electronic energy + Delta-G solvation = -26547.469594 eV Core-core repulsion = 23022.020847 eV Total energy + Delta-G solvation = -3525.448746 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.196 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.23491 -40.28725 -38.82023 -36.32050 -34.75309 -34.22689 -32.59141 -31.93197 -31.49513 -30.66393 -28.18996 -25.79377 -25.34029 -23.86711 -23.64813 -23.28382 -22.69503 -20.99902 -20.70796 -18.97448 -18.39373 -18.01647 -16.83560 -16.51789 -16.41857 -16.30985 -16.11794 -15.54797 -15.42711 -15.18193 -14.67903 -14.64847 -14.46210 -14.36985 -14.30639 -14.12851 -13.77132 -13.27277 -13.10921 -12.73417 -12.69607 -12.58937 -12.32392 -12.14631 -11.95494 -11.90402 -11.88808 -11.84919 -11.63923 -11.46646 -11.41341 -11.12095 -10.75429 -10.53738 -10.46336 -10.15836 -9.42293 -9.19000 -8.16315 -6.09297 -0.00499 0.20412 1.38905 1.39734 1.47781 2.13715 2.40947 2.80372 3.05754 3.21624 3.27062 3.59856 3.82886 3.83306 3.86848 4.08129 4.15594 4.19114 4.24471 4.29995 4.32188 4.40081 4.50341 4.54492 4.58636 4.71316 4.78576 4.80006 4.84151 4.94515 4.96167 5.01097 5.06743 5.14887 5.18157 5.23341 5.26632 5.30036 5.34863 5.41501 5.64649 5.64711 5.65476 5.76669 5.78306 5.91392 6.28040 6.29062 6.37927 6.62640 6.96858 7.16721 7.48102 8.94914 Molecular weight = 316.20amu Principal moments of inertia in cm(-1) A = 0.029599 B = 0.002483 C = 0.002452 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 945.741821 B =11272.998786 C =11415.596358 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.019 3.981 3 Si 0.942 3.058 4 H -0.266 1.266 5 H -0.294 1.294 6 H -0.267 1.267 7 C -0.496 4.496 8 C -0.015 4.015 9 C -0.085 4.085 10 C 0.114 3.886 11 H 0.031 0.969 12 N -0.681 5.681 13 C 0.088 3.912 14 C -0.140 4.140 15 C 0.088 3.912 16 N -0.468 5.468 17 C 0.471 3.529 18 N -0.578 5.578 19 C 0.157 3.843 20 C -0.248 4.248 21 C 0.161 3.839 22 N -0.557 5.557 23 C 0.078 3.922 24 C -0.093 4.093 25 C -0.097 4.097 26 C 0.008 3.992 27 H 0.262 0.738 28 H 0.024 0.976 29 H 0.019 0.981 30 H 0.049 0.951 31 H 0.043 0.957 32 H 0.343 0.657 33 H 0.065 0.935 34 H 0.076 0.924 35 H 0.069 0.931 36 H 0.082 0.918 37 H 0.044 0.956 38 H 0.196 0.804 39 H 0.185 0.815 40 H 0.201 0.799 41 H 0.038 0.962 42 H 0.095 0.905 43 H 0.083 0.917 44 H 0.075 0.925 45 H 0.041 0.959 46 H 0.049 0.951 47 H 0.024 0.976 48 H -0.002 1.002 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.066 -19.690 -2.805 29.706 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.178 4.178 3 Si 0.769 3.231 4 H -0.191 1.191 5 H -0.221 1.221 6 H -0.192 1.192 7 C -0.516 4.516 8 C -0.053 4.053 9 C -0.124 4.124 10 C 0.005 3.995 11 H 0.049 0.951 12 N -0.311 5.311 13 C -0.022 4.022 14 C -0.180 4.180 15 C -0.040 4.040 16 N -0.187 5.187 17 C 0.115 3.885 18 N -0.298 5.298 19 C -0.009 4.009 20 C -0.271 4.271 21 C -0.006 4.006 22 N -0.276 5.276 23 C -0.049 4.049 24 C -0.132 4.132 25 C -0.136 4.136 26 C -0.030 4.030 27 H 0.071 0.929 28 H 0.042 0.958 29 H 0.037 0.963 30 H 0.068 0.932 31 H 0.061 0.939 32 H 0.162 0.838 33 H 0.083 0.917 34 H 0.094 0.906 35 H 0.088 0.912 36 H 0.100 0.900 37 H 0.062 0.938 38 H 0.213 0.787 39 H 0.202 0.798 40 H 0.218 0.782 41 H 0.056 0.944 42 H 0.114 0.886 43 H 0.102 0.898 44 H 0.093 0.907 45 H 0.060 0.940 46 H 0.068 0.932 47 H 0.043 0.957 48 H 0.016 0.984 Dipole moment (debyes) X Y Z Total from point charges 21.015 -18.778 -3.709 28.425 hybrid contribution 0.529 0.346 1.477 1.606 sum 21.544 -18.432 -2.232 28.441 Atomic orbital electron populations 1.69965 1.07586 1.27417 1.52283 1.25607 0.95392 1.01747 0.95101 0.85811 0.78345 0.79540 0.79400 1.19121 1.22072 1.19242 1.20647 0.91208 0.91873 1.47845 1.19683 0.94732 0.95619 0.95299 1.21421 0.97476 0.94954 0.98522 1.21129 0.93777 0.92704 0.91873 0.95132 1.60588 1.06073 1.22551 1.41873 1.21654 0.91560 0.93644 0.95335 1.22331 0.96822 0.97817 1.01001 1.21799 0.93440 1.00107 0.88626 1.58422 1.16037 1.22898 1.21385 1.21216 0.89014 0.93251 0.85001 1.68414 1.22484 1.19378 1.19530 1.23722 0.86974 0.87686 1.02477 1.23135 1.04334 1.05325 0.94297 1.23785 0.90550 0.88294 0.97933 1.68040 1.07145 1.15715 1.36653 1.22140 0.98058 0.87490 0.97175 1.21505 0.94170 1.00296 0.97206 1.21595 0.94594 0.98007 0.99378 1.19314 0.96953 0.93649 0.93122 0.92883 0.95764 0.96285 0.93218 0.93862 0.83751 0.91655 0.90558 0.91227 0.89980 0.93803 0.78746 0.79803 0.78196 0.94361 0.88628 0.89840 0.90672 0.93980 0.93201 0.95699 0.98397 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.86 12.73 21.45 0.27 -55.59 16 2 C 0.02 1.09 5.46 84.66 0.46 1.55 16 3 Si 0.94 44.58 26.80 68.60 1.84 46.41 16 4 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 5 H -0.29 -13.85 7.11 99.48 0.71 -13.14 16 6 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 7 C -0.50 -26.61 5.51 -16.18 -0.09 -26.70 16 8 C -0.02 -0.71 5.59 30.10 0.17 -0.54 16 9 C -0.09 -3.42 5.43 30.65 0.17 -3.25 16 10 C 0.11 4.18 2.21 44.89 0.10 4.28 16 11 H 0.03 1.15 7.16 -2.39 -0.02 1.13 16 12 N -0.68 -20.22 6.06 -469.18 -2.84 -23.06 16 13 C 0.09 2.25 2.33 45.00 0.10 2.36 16 14 C -0.14 -3.31 5.34 30.65 0.16 -3.15 16 15 C 0.09 2.07 4.63 86.32 0.40 2.47 16 16 N -0.47 -11.23 4.72 -708.94 -3.34 -14.57 16 17 C 0.47 11.23 7.17 261.48 1.88 13.10 16 18 N -0.58 -12.58 8.68 -197.98 -1.72 -14.30 16 19 C 0.16 2.16 11.30 84.72 0.96 3.12 16 20 C -0.25 -2.35 10.16 22.45 0.23 -2.13 16 21 C 0.16 2.09 11.30 84.71 0.96 3.05 16 22 N -0.56 -11.91 9.65 -197.99 -1.91 -13.82 16 23 C 0.08 1.71 5.33 86.33 0.46 2.18 16 24 C -0.09 -2.09 5.70 30.65 0.17 -1.91 16 25 C -0.10 -4.06 5.24 30.65 0.16 -3.90 16 26 C 0.01 0.39 5.97 30.09 0.18 0.57 16 27 H 0.26 14.99 8.31 -92.71 -0.77 14.22 16 28 H 0.02 1.10 5.17 -2.38 -0.01 1.08 16 29 H 0.02 0.85 8.14 -2.38 -0.02 0.83 16 30 H 0.05 1.77 7.36 -2.39 -0.02 1.76 16 31 H 0.04 1.85 8.14 -2.39 -0.02 1.83 16 32 H 0.34 9.49 8.01 -89.70 -0.72 8.77 16 33 H 0.07 1.83 7.07 -2.39 -0.02 1.82 16 34 H 0.08 1.76 8.10 -2.39 -0.02 1.74 16 35 H 0.07 1.73 7.48 -2.39 -0.02 1.72 16 36 H 0.08 1.97 7.69 -2.39 -0.02 1.96 16 37 H 0.04 1.09 8.10 -2.39 -0.02 1.07 16 38 H 0.20 1.30 8.06 -2.91 -0.02 1.28 16 39 H 0.18 0.25 8.06 -2.91 -0.02 0.22 16 40 H 0.20 1.06 8.06 -2.92 -0.02 1.03 16 41 H 0.04 0.87 8.14 -2.39 -0.02 0.85 16 42 H 0.10 2.07 7.55 -2.39 -0.02 2.05 16 43 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 44 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 45 H 0.04 1.87 8.14 -2.39 -0.02 1.85 16 46 H 0.05 1.83 8.05 -2.39 -0.02 1.81 16 47 H 0.02 1.40 7.07 -2.39 -0.02 1.38 16 48 H 0.00 -0.12 8.14 -2.39 -0.02 -0.14 16 Total: -1.00 -67.10 366.92 -1.00 -68.10 By element: Atomic # 1 Polarization: 15.50 SS G_CDS: 0.23 Total: 15.73 kcal Atomic # 6 Polarization: -15.36 SS G_CDS: 6.47 Total: -8.90 kcal Atomic # 7 Polarization: -111.81 SS G_CDS: -9.54 Total: -121.35 kcal Atomic # 14 Polarization: 44.58 SS G_CDS: 1.84 Total: 46.41 kcal Total: -67.10 -1.00 -68.10 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001256046824.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.758 kcal (2) G-P(sol) polarization free energy of solvation -67.096 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.662 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.003 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.099 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.659 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds