Wall clock time and date at job start Tue Mar 31 2020 11:05:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86795 * 120.00348 * 2 1 4 4 H 1.48504 * 109.47146 * 240.00001 * 3 2 1 5 5 H 1.48498 * 109.47185 * 359.97438 * 3 2 1 6 6 H 1.48493 * 109.47254 * 120.00046 * 3 2 1 7 7 C 1.37885 * 119.99632 * 179.97438 * 2 1 3 8 8 C 1.51270 * 120.84826 * 180.02562 * 7 2 1 9 9 C 1.53223 * 108.53637 * 128.63056 * 8 7 2 10 10 C 1.52967 * 109.40293 * 54.62655 * 9 8 7 11 11 H 1.08995 * 109.35747 * 56.47348 * 10 9 8 12 12 N 1.46906 * 109.41251 * 176.29649 * 10 9 8 13 13 C 1.46902 * 110.99573 * 275.35261 * 12 10 9 14 14 C 1.53120 * 109.52258 * 274.68096 * 13 12 10 15 15 C 1.53037 * 109.27582 * 182.44437 * 14 13 12 16 16 N 1.46850 * 109.52622 * 59.18051 * 15 14 13 17 17 C 1.38397 * 111.00058 * 174.15865 * 16 15 14 18 18 N 1.32497 * 119.21917 * 123.93932 * 17 16 15 19 19 C 1.32281 * 120.74299 * 179.71606 * 18 17 16 20 20 C 1.38606 * 119.19508 * 0.54670 * 19 18 17 21 21 C 1.38605 * 118.55793 * 359.73150 * 20 19 18 22 22 N 1.32283 * 119.19968 * 359.97438 * 21 20 19 23 23 C 1.46845 * 111.19615 * 298.25935 * 16 15 14 24 24 C 1.53038 * 109.52638 * 61.74020 * 23 16 15 25 25 C 1.52961 * 109.81697 * 296.39893 * 10 9 8 26 26 C 1.51273 * 120.84766 * 0.02562 * 7 2 1 27 27 H 0.96998 * 119.99237 * 0.02562 * 1 2 3 28 28 H 1.09003 * 109.62037 * 248.34473 * 8 7 2 29 29 H 1.08999 * 109.62734 * 8.91616 * 8 7 2 30 30 H 1.08996 * 109.48598 * 294.65160 * 9 8 7 31 31 H 1.08999 * 109.48433 * 174.60439 * 9 8 7 32 32 H 1.00896 * 111.00309 * 151.39673 * 12 10 9 33 33 H 1.08994 * 109.52613 * 34.87665 * 13 12 10 34 34 H 1.09000 * 109.50274 * 302.38257 * 14 13 12 35 35 H 1.08996 * 109.49940 * 62.50376 * 14 13 12 36 36 H 1.08998 * 109.46644 * 299.16234 * 15 14 13 37 37 H 1.08998 * 109.46139 * 179.19747 * 15 14 13 38 38 H 1.07994 * 120.39964 * 180.25463 * 19 18 17 39 39 H 1.07999 * 120.71735 * 179.70953 * 20 19 18 40 40 H 1.08000 * 120.40047 * 179.97438 * 21 20 19 41 41 H 1.09005 * 109.46028 * 301.72276 * 23 16 15 42 42 H 1.09004 * 109.45920 * 181.75998 * 23 16 15 43 43 H 1.09000 * 109.50264 * 180.88154 * 24 23 16 44 44 H 1.09000 * 109.53269 * 60.77928 * 24 23 16 45 45 H 1.09004 * 109.48052 * 183.57687 * 25 10 9 46 46 H 1.09001 * 109.48334 * 303.60548 * 25 10 9 47 47 H 1.08997 * 109.62506 * 111.65549 * 26 7 2 48 48 H 1.09000 * 109.62864 * 351.08289 * 26 7 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2844 2.7464 -0.0006 6 1 3.1030 1.6963 1.2124 7 6 2.0045 -1.1942 0.0005 8 6 3.5171 -1.2167 0.0011 9 6 3.9902 -2.1305 1.1364 10 6 3.3394 -3.5066 0.9858 11 1 3.5737 -3.9113 0.0013 12 7 3.8603 -4.4090 2.0213 13 6 5.1263 -5.0217 1.5972 14 6 4.8353 -6.2701 0.7598 15 6 6.1567 -6.9379 0.3724 16 7 6.8968 -7.3030 1.5871 17 6 8.0354 -8.0255 1.2758 18 7 9.2134 -7.5899 1.6980 19 6 10.3203 -8.2596 1.4226 20 6 10.2380 -9.4230 0.6737 21 6 8.9906 -9.8472 0.2433 22 7 7.9222 -9.1337 0.5585 23 6 7.2287 -6.1150 2.3838 24 6 5.9393 -5.4226 2.8313 25 6 1.8223 -3.3820 1.1363 26 6 1.2676 -2.5152 0.0005 27 1 -0.4849 0.8401 -0.0004 28 1 3.8778 -1.6012 -0.9529 29 1 3.8982 -0.2079 0.1602 30 1 3.7055 -1.6967 2.0949 31 1 5.0743 -2.2343 1.0917 32 1 3.1800 -5.1142 2.2620 33 1 5.6954 -4.3074 1.0024 34 1 4.2326 -6.9668 1.3424 35 1 4.2935 -5.9851 -0.1420 36 1 6.7530 -6.2455 -0.2219 37 1 5.9526 -7.8350 -0.2120 38 1 11.2771 -7.9017 1.7729 39 1 11.1267 -9.9866 0.4306 40 1 8.8921 -10.7492 -0.3423 41 1 7.8200 -5.4264 1.7802 42 1 7.8032 -6.4145 3.2604 43 1 6.1862 -4.5322 3.4095 44 1 5.3537 -6.1055 3.4468 45 1 1.3700 -4.3727 1.0916 46 1 1.5889 -2.9187 2.0950 47 1 1.4204 -3.0197 -0.9535 48 1 0.2034 -2.3408 0.1592 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001256046825.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:05:21 Heat of formation + Delta-G solvation = 51.625630 kcal Electronic energy + Delta-G solvation = -26545.114122 eV Core-core repulsion = 23020.444471 eV Total energy + Delta-G solvation = -3524.669652 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.196 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.51463 -39.26197 -37.36940 -34.96490 -34.05993 -32.65485 -31.29682 -31.01512 -29.86801 -29.31151 -26.57470 -25.12093 -24.28118 -22.95382 -22.50923 -21.52066 -21.18069 -19.86451 -19.07045 -18.20063 -17.66476 -16.23758 -15.99936 -15.72481 -15.18207 -14.99383 -14.70383 -14.55230 -14.42113 -13.89821 -13.66802 -13.65883 -13.24382 -13.11752 -12.64826 -12.44832 -12.19114 -11.97367 -11.62776 -11.42759 -11.31287 -11.18372 -11.12482 -10.94143 -10.87502 -10.68204 -10.55434 -10.35955 -10.20480 -10.06033 -9.93874 -9.59149 -9.46043 -8.86981 -8.63721 -8.59663 -8.43164 -7.88299 -6.06439 -3.96460 0.64818 0.81063 2.90256 3.31783 3.38071 3.39764 3.47778 3.84844 4.28175 4.39986 4.42114 4.43341 4.74130 4.79635 4.83160 4.86483 5.03323 5.17766 5.21429 5.24591 5.41714 5.47195 5.58714 5.62688 5.76520 5.77050 5.84112 5.86111 5.96311 6.08061 6.17730 6.28928 6.31798 6.49723 6.53630 6.59093 6.71948 6.83077 6.91158 6.98639 7.00365 7.09623 7.11497 7.48622 7.62030 7.71089 7.78767 7.86817 7.87217 7.92761 8.43236 9.00748 9.58698 11.03497 Molecular weight = 316.20amu Principal moments of inertia in cm(-1) A = 0.029331 B = 0.002502 C = 0.002436 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 954.408286 B =11188.853974 C =11491.974701 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.075 3.925 3 Si 0.891 3.109 4 H -0.276 1.276 5 H -0.293 1.293 6 H -0.274 1.274 7 C -0.486 4.486 8 C -0.012 4.012 9 C -0.091 4.091 10 C 0.101 3.899 11 H 0.031 0.969 12 N -0.684 5.684 13 C 0.085 3.915 14 C -0.147 4.147 15 C 0.074 3.926 16 N -0.458 5.458 17 C 0.496 3.504 18 N -0.552 5.552 19 C 0.173 3.827 20 C -0.268 4.268 21 C 0.174 3.826 22 N -0.533 5.533 23 C 0.072 3.928 24 C -0.106 4.106 25 C -0.108 4.108 26 C 0.012 3.988 27 H 0.264 0.736 28 H 0.014 0.986 29 H 0.023 0.977 30 H 0.056 0.944 31 H 0.027 0.973 32 H 0.335 0.665 33 H 0.076 0.924 34 H 0.075 0.925 35 H 0.076 0.924 36 H 0.044 0.956 37 H 0.092 0.908 38 H 0.167 0.833 39 H 0.145 0.855 40 H 0.169 0.831 41 H 0.052 0.948 42 H 0.087 0.913 43 H 0.081 0.919 44 H 0.070 0.930 45 H 0.026 0.974 46 H 0.057 0.943 47 H 0.001 0.999 48 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.857 -18.145 2.293 26.270 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.128 4.128 3 Si 0.719 3.281 4 H -0.202 1.202 5 H -0.219 1.219 6 H -0.199 1.199 7 C -0.505 4.505 8 C -0.050 4.050 9 C -0.130 4.130 10 C -0.007 4.007 11 H 0.049 0.951 12 N -0.313 5.313 13 C -0.026 4.026 14 C -0.186 4.186 15 C -0.053 4.053 16 N -0.177 5.177 17 C 0.141 3.859 18 N -0.272 5.272 19 C 0.006 3.994 20 C -0.292 4.292 21 C 0.006 3.994 22 N -0.251 5.251 23 C -0.056 4.056 24 C -0.145 4.145 25 C -0.146 4.146 26 C -0.026 4.026 27 H 0.074 0.926 28 H 0.032 0.968 29 H 0.042 0.958 30 H 0.075 0.925 31 H 0.046 0.954 32 H 0.153 0.847 33 H 0.094 0.906 34 H 0.094 0.906 35 H 0.094 0.906 36 H 0.062 0.938 37 H 0.110 0.890 38 H 0.184 0.816 39 H 0.163 0.837 40 H 0.186 0.814 41 H 0.070 0.930 42 H 0.106 0.894 43 H 0.100 0.900 44 H 0.089 0.911 45 H 0.045 0.955 46 H 0.076 0.924 47 H 0.019 0.981 48 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 17.747 -17.206 3.175 24.921 hybrid contribution 1.450 0.043 -1.192 1.878 sum 19.197 -17.162 1.982 25.826 Atomic orbital electron populations 1.69828 1.06126 1.26953 1.50038 1.24843 0.94733 0.98526 0.94649 0.86658 0.79386 0.83077 0.78949 1.20162 1.21931 1.19930 1.20023 0.89303 0.91472 1.49670 1.19650 0.96765 0.94718 0.93906 1.21541 0.96071 0.94744 1.00604 1.21436 0.95615 0.92715 0.90938 0.95066 1.60701 1.05215 1.22238 1.43142 1.21658 0.92753 0.93494 0.94652 1.22416 0.96189 0.98385 1.01631 1.22136 0.94441 1.00484 0.88195 1.58387 1.15886 1.23187 1.20268 1.21160 0.87793 0.89401 0.87567 1.68437 0.98607 1.33816 1.26354 1.23083 0.96706 0.89741 0.89875 1.22714 1.00508 1.01172 1.04834 1.23108 0.87343 0.96702 0.92264 1.68054 1.33928 1.06774 1.16321 1.22100 0.97565 0.88367 0.97519 1.21657 0.94531 1.00268 0.98017 1.21810 0.92808 0.97889 1.02142 1.19359 0.98660 0.92942 0.91665 0.92604 0.96803 0.95807 0.92487 0.95412 0.84665 0.90611 0.90608 0.90566 0.93762 0.89007 0.81583 0.83683 0.81415 0.92962 0.89447 0.90022 0.91078 0.95510 0.92415 0.98099 0.92405 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.91 12.73 55.43 0.71 -25.21 16 2 C 0.07 2.07 5.46 -17.81 -0.10 1.98 16 3 Si 0.89 21.62 26.80 -169.99 -4.56 17.07 16 4 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 5 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 6 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 7 C -0.49 -12.90 5.51 -98.92 -0.55 -13.45 16 8 C -0.01 -0.29 5.59 -27.49 -0.15 -0.44 16 9 C -0.09 -1.89 5.43 -26.63 -0.14 -2.04 16 10 C 0.10 1.92 2.21 -67.75 -0.15 1.77 16 11 H 0.03 0.61 7.16 -51.93 -0.37 0.23 16 12 N -0.68 -10.72 6.06 -99.65 -0.60 -11.32 16 13 C 0.09 1.15 2.33 -67.59 -0.16 0.99 16 14 C -0.15 -1.80 5.34 -26.65 -0.14 -1.94 16 15 C 0.07 0.88 5.33 -3.83 -0.02 0.86 16 16 N -0.46 -5.67 4.72 -175.43 -0.83 -6.50 16 17 C 0.50 6.14 7.17 -322.81 -2.32 3.83 16 18 N -0.55 -6.24 8.68 -13.93 -0.12 -6.36 16 19 C 0.17 1.37 11.30 -17.22 -0.19 1.18 16 20 C -0.27 -1.73 10.16 -39.31 -0.40 -2.13 16 21 C 0.17 1.39 11.30 -17.22 -0.19 1.19 16 22 N -0.53 -6.17 9.66 -13.93 -0.13 -6.30 16 23 C 0.07 0.84 4.63 -3.83 -0.02 0.82 16 24 C -0.11 -1.28 5.70 -26.65 -0.15 -1.43 16 25 C -0.11 -2.27 5.24 -26.61 -0.14 -2.41 16 26 C 0.01 0.29 5.97 -27.46 -0.16 0.13 16 27 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 28 H 0.01 0.32 8.14 -51.93 -0.42 -0.11 16 29 H 0.02 0.56 5.17 -51.93 -0.27 0.29 16 30 H 0.06 1.26 8.14 -51.93 -0.42 0.83 16 31 H 0.03 0.52 7.36 -51.93 -0.38 0.14 16 32 H 0.34 4.95 8.01 -39.29 -0.31 4.63 16 33 H 0.08 1.12 7.07 -51.93 -0.37 0.76 16 34 H 0.08 0.92 8.10 -51.93 -0.42 0.50 16 35 H 0.08 0.98 7.48 -51.93 -0.39 0.59 16 36 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 37 H 0.09 1.09 7.55 -51.93 -0.39 0.70 16 38 H 0.17 0.76 8.06 -52.49 -0.42 0.34 16 39 H 0.15 0.46 8.06 -52.49 -0.42 0.04 16 40 H 0.17 0.77 8.06 -52.49 -0.42 0.34 16 41 H 0.05 0.63 8.10 -51.93 -0.42 0.21 16 42 H 0.09 1.01 7.69 -51.93 -0.40 0.61 16 43 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 44 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 45 H 0.03 0.50 8.05 -51.93 -0.42 0.08 16 46 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 47 H 0.00 0.02 8.14 -51.93 -0.42 -0.41 16 48 H 0.06 1.58 7.07 -51.93 -0.37 1.22 16 LS Contribution 366.92 15.07 5.53 5.53 Total: -1.00 -30.36 366.92 -12.87 -43.23 By element: Atomic # 1 Polarization: 8.84 SS G_CDS: -7.87 Total: 0.97 kcal Atomic # 6 Polarization: -6.12 SS G_CDS: -4.99 Total: -11.10 kcal Atomic # 7 Polarization: -54.71 SS G_CDS: -0.98 Total: -55.69 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -4.56 Total: 17.07 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -30.36 -12.87 -43.23 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001256046825.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.853 kcal (2) G-P(sol) polarization free energy of solvation -30.359 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.494 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.869 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.227 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.626 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds